Wall clock time and date at job start Tue Mar 31 2020 18:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30496 * 125.64577 * 90.02138 * 3 2 1 5 5 C 1.34131 * 109.25387 * 180.02562 * 4 3 2 6 6 C 1.34670 * 108.02144 * 0.02562 * 5 4 3 7 7 N 1.35037 * 125.65176 * 269.72246 * 3 2 1 8 8 C 1.46504 * 126.39704 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.47036 * 0.02562 * 8 7 3 10 10 C 1.53001 * 109.47018 * 120.00220 * 8 7 3 11 11 C 1.52995 * 109.47244 * 240.00067 * 8 7 3 12 12 C 1.50697 * 109.47362 * 175.00149 * 11 8 7 13 13 O 1.21283 * 119.99996 * 0.02562 * 12 11 8 14 14 N 1.34776 * 120.00462 * 180.02562 * 12 11 8 15 15 C 1.46502 * 120.00299 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.47016 * 35.00181 * 15 14 12 17 17 C 1.53005 * 109.46946 * 155.00176 * 15 14 12 18 18 N 1.46502 * 109.47165 * 305.00289 * 17 15 14 19 19 C 1.36936 * 120.00197 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99610 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99968 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00211 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47452 * 59.99440 * 23 21 19 25 25 H 1.48500 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47006 * 299.99453 * 23 21 19 27 27 C 1.53001 * 109.47120 * 274.99988 * 15 14 12 28 28 C 1.52999 * 117.49238 * 128.74774 * 27 15 14 29 29 C 1.53005 * 117.49773 * 60.08841 * 27 15 14 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.08004 * 125.98782 * 179.97438 * 5 4 3 36 36 H 1.07997 * 126.59386 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47160 * 60.00158 * 10 8 7 38 38 H 1.08996 * 109.47496 * 180.02562 * 10 8 7 39 39 H 1.09005 * 109.46850 * 300.00147 * 10 8 7 40 40 H 1.09007 * 109.47034 * 295.00196 * 11 8 7 41 41 H 1.08999 * 109.46986 * 55.00031 * 11 8 7 42 42 H 0.97005 * 119.99530 * 0.02562 * 14 12 11 43 43 H 1.08995 * 109.47066 * 64.99770 * 17 15 14 44 44 H 1.08996 * 109.46951 * 185.00208 * 17 15 14 45 45 H 0.97008 * 119.99929 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00364 * 180.02562 * 22 21 19 47 47 H 1.08994 * 115.55263 * 274.41345 * 27 15 14 48 48 H 1.09000 * 117.50452 * 359.97438 * 28 27 15 49 49 H 1.09003 * 117.49593 * 145.02226 * 28 27 15 50 50 H 1.08993 * 117.49816 * 214.97512 * 29 27 15 51 51 H 1.09005 * 117.49555 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2862 2.1377 1.0605 5 6 2.7145 3.3512 0.6819 6 6 2.7259 3.3877 -0.6642 7 7 2.2997 2.1611 -1.0973 8 6 2.1561 1.7330 -2.4910 9 1 1.7930 0.7057 -2.5199 10 6 1.1577 2.6466 -3.2048 11 6 3.5135 1.8145 -3.1920 12 6 3.3923 1.2592 -4.5877 13 8 2.3250 0.8399 -4.9829 14 7 4.4697 1.2284 -5.3968 15 6 4.3519 0.6880 -6.7534 16 1 3.3702 0.9337 -7.1583 17 6 5.4376 1.2990 -7.6417 18 7 5.3497 2.7603 -7.5853 19 6 6.2259 3.5273 -8.3058 20 1 6.9820 3.0549 -8.9153 21 6 6.1429 4.9118 -8.2518 22 7 5.2217 5.4874 -7.5086 23 14 7.3387 5.9581 -9.2341 24 1 7.1979 5.6462 -10.6792 25 1 7.0411 7.3951 -9.0071 26 1 8.7274 5.6647 -8.7974 27 6 4.5214 -0.8321 -6.7134 28 6 3.4502 -1.6805 -7.4015 29 6 3.5238 -1.6322 -5.8733 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.9994 4.1578 1.3412 36 1 3.0198 4.2226 -1.2831 37 1 1.5205 3.6741 -3.1759 38 1 1.0505 2.3279 -4.2416 39 1 0.1906 2.5885 -2.7053 40 1 3.8349 2.8549 -3.2416 41 1 4.2469 1.2340 -2.6324 42 1 5.3234 1.5634 -5.0805 43 1 6.4181 0.9801 -7.2884 44 1 5.2958 0.9659 -8.6698 45 1 4.6702 3.1845 -7.0381 46 1 5.1635 6.4550 -7.4712 47 1 5.5496 -1.1917 -6.7516 48 1 2.6246 -1.1559 -7.8824 49 1 3.7737 -2.5986 -7.8921 50 1 3.8957 -2.5184 -5.3591 51 1 2.7471 -1.0755 -5.3488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754440574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:03 Heat of formation + Delta-G solvation = 32.810755 kcal Electronic energy + Delta-G solvation = -29584.519011 eV Core-core repulsion = 25713.039815 eV Total energy + Delta-G solvation = -3871.479196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.15608 -41.18352 -38.69323 -36.62258 -36.53769 -34.97699 -34.68802 -33.05862 -31.83322 -30.09422 -29.53756 -28.54008 -25.91079 -24.83205 -24.18099 -23.27055 -23.04630 -22.30614 -21.40834 -21.21423 -20.20243 -19.24522 -18.51175 -17.45205 -17.40262 -16.77256 -16.65134 -16.25195 -16.12935 -15.75398 -15.47911 -15.18029 -15.11940 -14.87499 -14.71751 -14.42928 -14.35612 -14.13745 -13.93379 -13.71195 -13.20182 -13.17840 -12.95005 -12.77339 -12.66884 -12.56157 -12.50964 -12.44734 -12.26445 -12.16724 -12.12014 -11.94490 -11.85643 -11.24929 -11.09527 -11.00600 -10.96772 -10.72467 -10.54653 -9.90875 -9.29425 -9.01464 -7.95140 -5.24004 1.10429 1.48587 1.50127 1.56170 1.59558 1.67876 2.18514 2.28294 2.55514 3.04252 3.39273 3.41428 3.49983 3.59597 3.65168 3.77811 3.92171 3.97892 4.08423 4.14596 4.19640 4.24604 4.36980 4.37808 4.41423 4.47592 4.49147 4.50994 4.65428 4.67688 4.70304 4.77565 4.84912 4.86501 4.91321 4.99996 5.07073 5.09542 5.12482 5.16538 5.30059 5.31265 5.39918 5.45281 5.50117 5.59981 5.85474 6.25775 6.27218 6.57941 7.16597 7.25431 7.33922 8.06544 8.30981 9.27282 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.003179 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.247278 B = 8805.926942 C =10868.099573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C 0.200 3.800 4 N -0.526 5.526 5 C -0.050 4.050 6 C -0.056 4.056 7 N -0.446 5.446 8 C 0.158 3.842 9 H 0.116 0.884 10 C -0.160 4.160 11 C -0.144 4.144 12 C 0.525 3.475 13 O -0.562 6.562 14 N -0.704 5.704 15 C 0.181 3.819 16 H 0.062 0.938 17 C 0.149 3.851 18 N -0.741 5.741 19 C -0.245 4.245 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.965 5.965 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.277 1.277 27 C -0.167 4.167 28 C -0.167 4.167 29 C -0.177 4.177 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.408 0.592 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.116 0.884 48 H 0.082 0.918 49 H 0.111 0.889 50 H 0.102 0.898 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -13.852 12.054 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 C -0.063 4.063 4 N -0.246 5.246 5 C -0.197 4.197 6 C -0.189 4.189 7 N -0.129 5.129 8 C 0.055 3.945 9 H 0.133 0.867 10 C -0.218 4.218 11 C -0.184 4.184 12 C 0.312 3.688 13 O -0.443 6.443 14 N -0.353 5.353 15 C 0.076 3.924 16 H 0.080 0.920 17 C 0.022 3.978 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.094 0.906 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.799 3.201 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.203 1.203 27 C -0.186 4.186 28 C -0.205 4.205 29 C -0.214 4.214 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.199 0.801 36 H 0.204 0.796 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.243 0.757 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.208 0.792 46 H 0.059 0.941 47 H 0.134 0.866 48 H 0.101 0.899 49 H 0.130 0.870 50 H 0.120 0.880 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.271 -14.407 12.303 19.956 hybrid contribution 0.932 1.892 -1.165 2.410 sum -5.339 -12.514 11.138 17.583 Atomic orbital electron populations 1.21702 0.93340 1.03306 1.01616 1.20110 0.96926 0.86070 1.04819 1.23776 1.03688 0.97587 0.81219 1.70208 1.19671 1.05242 1.29430 1.22605 1.07143 0.96395 0.93565 1.22979 1.08629 0.90449 0.96807 1.45639 1.48512 1.11568 1.07136 1.21065 0.95194 1.01310 0.76958 0.86654 1.22189 0.98421 0.99093 1.02049 1.21923 0.98882 1.04726 0.92908 1.20396 0.83600 0.77682 0.87170 1.90597 1.28012 1.48967 1.76700 1.45923 1.12925 1.62507 1.13943 1.20515 0.98861 0.91154 0.81822 0.91956 1.21038 0.96168 0.83608 0.96975 1.42471 1.38948 1.00860 1.56147 1.19556 1.09106 0.88866 1.20185 0.90568 1.25480 1.00944 0.97892 1.01910 1.69790 1.37485 1.09110 1.45112 0.85281 0.78911 0.77418 0.78523 1.20775 1.22442 1.20265 1.22550 0.96941 0.91634 1.07524 1.22974 1.00249 1.01766 0.95503 1.23223 1.02097 1.02033 0.94041 0.93064 0.93392 0.89560 0.89065 0.88257 0.80110 0.79603 0.92293 0.89900 0.91820 0.87715 0.86734 0.75667 0.94417 0.94847 0.79224 0.94105 0.86553 0.89931 0.87049 0.87968 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.04 -0.67 6.08 29.85 0.18 -0.49 16 3 C 0.20 4.63 7.16 138.13 0.99 5.62 16 4 N -0.53 -14.34 11.25 -188.13 -2.12 -16.45 16 5 C -0.05 -1.21 11.87 83.52 0.99 -0.22 16 6 C -0.06 -1.24 10.70 83.09 0.89 -0.35 16 7 N -0.45 -9.73 2.61 -491.91 -1.28 -11.01 16 8 C 0.16 3.23 2.64 44.99 0.12 3.35 16 9 H 0.12 2.25 6.48 -2.39 -0.02 2.23 16 10 C -0.16 -3.64 8.99 71.98 0.65 -3.00 16 11 C -0.14 -2.98 5.19 29.85 0.15 -2.82 16 12 C 0.52 13.72 6.88 87.66 0.60 14.32 16 13 O -0.56 -16.94 10.99 -3.04 -0.03 -16.97 16 14 N -0.70 -19.29 4.50 -442.53 -1.99 -21.28 16 15 C 0.18 5.47 2.43 44.99 0.11 5.58 16 16 H 0.06 2.22 7.33 -2.39 -0.02 2.21 16 17 C 0.15 5.35 5.80 86.38 0.50 5.85 16 18 N -0.74 -34.75 5.43 -343.46 -1.87 -36.62 16 19 C -0.25 -12.93 9.99 84.03 0.84 -12.09 16 20 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 22 N -0.96 -56.43 13.06 21.65 0.28 -56.15 16 23 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 C -0.17 -4.02 5.36 -10.79 -0.06 -4.08 16 28 C -0.17 -3.74 10.18 30.62 0.31 -3.42 16 29 C -0.18 -3.98 9.74 30.62 0.30 -3.68 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.26 7.07 -2.39 -0.02 1.24 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 37 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 38 H 0.08 2.23 5.95 -2.39 -0.01 2.21 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.10 2.24 8.09 -2.38 -0.02 2.22 16 41 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.41 10.77 8.60 -92.70 -0.80 9.97 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.38 18.94 7.33 -92.70 -0.68 18.26 16 46 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.12 2.53 8.11 -2.39 -0.02 2.51 16 48 H 0.08 2.05 8.05 -2.39 -0.02 2.03 16 49 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.10 2.66 5.02 -2.38 -0.01 2.65 16 Total: -1.00 -65.94 410.77 2.23 -63.71 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -0.54 Total: 48.50 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 7.75 Total: -0.21 kcal Atomic # 7 Polarization: -134.53 SS G_CDS: -6.97 Total: -141.50 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.03 Total: -16.97 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.94 2.23 -63.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754440574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.520 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds