Wall clock time and date at job start Tue Mar 31 2020 18:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47027 * 2 1 4 4 N 1.30502 * 125.64425 * 270.27259 * 3 2 1 5 5 C 1.34127 * 109.25683 * 180.14781 * 4 3 2 6 6 C 1.34672 * 108.01948 * 359.61488 * 5 4 3 7 7 N 1.35041 * 125.65474 * 89.99384 * 3 2 1 8 8 C 1.46499 * 126.39624 * 0.02562 * 7 3 2 9 9 H 1.09003 * 109.47013 * 0.02562 * 8 7 3 10 10 C 1.53004 * 109.47160 * 120.02297 * 8 7 3 11 11 C 1.52998 * 109.47004 * 240.01843 * 8 7 3 12 12 C 1.50701 * 109.47001 * 174.99790 * 11 8 7 13 13 O 1.21276 * 119.99986 * 0.02562 * 12 11 8 14 14 N 1.34778 * 119.99590 * 180.02562 * 12 11 8 15 15 C 1.46506 * 119.99716 * 180.02562 * 14 12 11 16 16 H 1.09000 * 112.84892 * 23.80085 * 15 14 12 17 17 C 1.53776 * 113.61586 * 155.00030 * 15 14 12 18 18 C 1.53773 * 87.08519 * 89.11255 * 17 15 14 19 19 H 1.09000 * 113.61610 * 270.80603 * 18 17 15 20 20 C 1.52997 * 113.61458 * 139.97717 * 18 17 15 21 21 N 1.46498 * 109.47166 * 175.00060 * 20 18 17 22 22 C 1.36943 * 120.00102 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00034 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99854 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99859 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 119.99974 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47466 * 90.00113 * 26 24 22 28 28 H 1.48505 * 109.47140 * 209.99866 * 26 24 22 29 29 H 1.48498 * 109.47392 * 329.99453 * 26 24 22 30 30 C 1.53781 * 113.61135 * 252.49667 * 15 14 12 31 31 H 1.08999 * 109.47577 * 300.00557 * 1 2 3 32 32 H 1.08998 * 109.46940 * 60.00867 * 1 2 3 33 33 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47142 * 239.99607 * 2 1 3 35 35 H 1.09006 * 109.46650 * 119.99316 * 2 1 3 36 36 H 1.08002 * 125.99481 * 179.88589 * 5 4 3 37 37 H 1.07997 * 126.59503 * 180.24939 * 6 5 4 38 38 H 1.09000 * 109.46745 * 300.00078 * 10 8 7 39 39 H 1.08997 * 109.46963 * 59.99693 * 10 8 7 40 40 H 1.08996 * 109.47290 * 179.97438 * 10 8 7 41 41 H 1.08996 * 109.47651 * 295.00311 * 11 8 7 42 42 H 1.09002 * 109.46891 * 55.00420 * 11 8 7 43 43 H 0.96998 * 120.00510 * 359.97438 * 14 12 11 44 44 H 1.09007 * 113.61458 * 203.66819 * 17 15 14 45 45 H 1.09000 * 113.61395 * 334.56013 * 17 15 14 46 46 H 1.08995 * 109.47621 * 295.00571 * 20 18 17 47 47 H 1.08998 * 109.46971 * 55.00517 * 20 18 17 48 48 H 0.97005 * 120.00127 * 0.02562 * 21 20 18 49 49 H 0.97000 * 120.00242 * 179.97438 * 25 24 22 50 50 H 1.08995 * 113.61432 * 25.43251 * 30 15 14 51 51 H 1.09007 * 113.61028 * 156.33691 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2811 2.1395 -1.0605 5 6 2.7147 3.3510 -0.6821 6 6 2.7274 3.3872 0.6640 7 7 2.2946 2.1630 1.0973 8 6 2.1445 1.7372 2.4910 9 1 1.7821 0.7096 2.5199 10 6 3.4986 1.8206 3.1984 11 6 1.1424 2.6517 3.1984 12 6 0.8949 2.1409 4.5945 13 8 1.4643 1.1439 4.9852 14 7 0.0408 2.7920 5.4087 15 6 -0.1994 2.2957 6.7661 16 1 0.6221 1.6884 7.1462 17 6 -0.6655 3.3847 7.7466 18 6 -2.1023 3.0501 7.3127 19 1 -2.4443 3.6265 6.4531 20 6 -3.1069 3.0510 8.4666 21 7 -4.4572 2.8410 7.9386 22 6 -5.5279 2.8042 8.7916 23 1 -5.3769 2.9304 9.8535 24 6 -6.8073 2.6047 8.2913 25 7 -7.8363 2.5689 9.1112 26 14 -7.0683 2.3857 6.4547 27 1 -6.9774 0.9441 6.1102 28 1 -8.4102 2.9003 6.0806 29 1 -6.0251 3.1387 5.7132 30 6 -1.5824 1.6490 6.9497 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.9993 4.1578 -1.3414 37 1 3.0221 4.2218 1.2829 38 1 4.2125 1.1691 2.6943 39 1 3.8610 2.8481 3.1694 40 1 3.3868 1.5042 4.2354 41 1 1.5454 3.6632 3.2478 42 1 0.2043 2.6610 2.6434 43 1 -0.4143 3.5896 5.0963 44 1 -0.4586 3.1497 8.7908 45 1 -0.3476 4.3892 7.4670 46 1 -2.8606 2.2499 9.1635 47 1 -3.0643 4.0091 8.9846 48 1 -4.5929 2.7280 6.9848 49 1 -8.7304 2.4298 8.7616 50 1 -2.0049 1.2521 6.0266 51 1 -1.6263 0.9394 7.7760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755472233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:54 Heat of formation + Delta-G solvation = 25.580488 kcal Electronic energy + Delta-G solvation = -28561.615096 eV Core-core repulsion = 24689.822372 eV Total energy + Delta-G solvation = -3871.792724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.16466 -41.36263 -39.71934 -36.76701 -36.37760 -34.72884 -34.48580 -33.21314 -31.81833 -29.61228 -29.42408 -28.40968 -26.62545 -25.15077 -24.77123 -24.07037 -22.97165 -22.31315 -21.43675 -20.50407 -20.18184 -19.48063 -18.59703 -17.45857 -17.06378 -16.70640 -16.67187 -16.36637 -15.95869 -15.82959 -15.65947 -15.19474 -15.05643 -14.98911 -14.63709 -14.49680 -14.37615 -14.34434 -13.89395 -13.83892 -13.52225 -13.39300 -13.21703 -13.09412 -12.88440 -12.68109 -12.55814 -12.52839 -12.22447 -12.17468 -11.99463 -11.88747 -11.72126 -11.39651 -11.17832 -11.10348 -10.91193 -10.82334 -10.58967 -10.03814 -9.28786 -9.28577 -8.04003 -5.36985 1.09562 1.35283 1.40069 1.47352 1.52927 1.62590 2.19056 2.25186 2.47151 3.27226 3.37518 3.46749 3.47947 3.58180 3.64101 3.74751 3.86801 3.90250 3.94533 4.07009 4.11728 4.22151 4.32894 4.39800 4.46927 4.48774 4.53997 4.65897 4.66583 4.72932 4.80122 4.86077 4.86245 4.90098 4.92750 4.96055 4.98921 5.05626 5.13323 5.16665 5.25246 5.26477 5.34965 5.42704 5.66650 5.75748 5.87185 6.20479 6.24968 6.49610 7.07709 7.17415 7.18672 7.85022 8.03644 9.17746 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.002271 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.013019 B =12325.714675 C =13562.054552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.195 3.805 4 N -0.530 5.530 5 C -0.057 4.057 6 C -0.047 4.047 7 N -0.446 5.446 8 C 0.148 3.852 9 H 0.103 0.897 10 C -0.159 4.159 11 C -0.143 4.143 12 C 0.523 3.477 13 O -0.569 6.569 14 N -0.700 5.700 15 C 0.128 3.872 16 H 0.097 0.903 17 C -0.119 4.119 18 C -0.116 4.116 19 H 0.094 0.906 20 C 0.161 3.839 21 N -0.758 5.758 22 C -0.236 4.236 23 H 0.054 0.946 24 C -0.068 4.068 25 N -0.985 5.985 26 Si 0.959 3.041 27 H -0.280 1.280 28 H -0.296 1.296 29 H -0.248 1.248 30 C -0.146 4.146 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.181 0.819 37 H 0.203 0.797 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.415 0.585 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.023 0.977 47 H 0.024 0.976 48 H 0.366 0.634 49 H 0.258 0.742 50 H 0.058 0.942 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.153 1.640 -17.318 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.067 4.067 4 N -0.250 5.250 5 C -0.203 4.203 6 C -0.179 4.179 7 N -0.129 5.129 8 C 0.045 3.955 9 H 0.121 0.879 10 C -0.217 4.217 11 C -0.183 4.183 12 C 0.310 3.690 13 O -0.448 6.448 14 N -0.351 5.351 15 C 0.022 3.978 16 H 0.115 0.885 17 C -0.157 4.157 18 C -0.135 4.135 19 H 0.112 0.888 20 C 0.035 3.965 21 N -0.403 5.403 22 C -0.367 4.367 23 H 0.072 0.928 24 C -0.259 4.259 25 N -0.636 5.636 26 Si 0.786 3.214 27 H -0.206 1.206 28 H -0.223 1.223 29 H -0.173 1.173 30 C -0.185 4.185 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.198 0.802 37 H 0.219 0.781 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.252 0.748 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.199 0.801 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 27.378 0.663 -17.490 32.494 hybrid contribution -1.098 0.475 0.002 1.196 sum 26.280 1.138 -17.488 31.588 Atomic orbital electron populations 1.21699 0.93526 1.03111 1.01687 1.20064 0.96705 0.86657 1.04578 1.23622 1.04175 0.97390 0.81537 1.70207 1.19534 1.05582 1.29635 1.22665 1.07310 0.96281 0.94093 1.23071 1.07958 0.90355 0.96561 1.45658 1.48390 1.11812 1.07008 1.21149 0.97528 0.99703 0.77089 0.87911 1.22201 0.94184 1.03322 1.01945 1.21952 1.01908 1.02298 0.92166 1.20558 0.78084 0.83093 0.87224 1.90702 1.50438 1.26758 1.76913 1.45616 1.45131 1.30829 1.13484 1.21730 0.96817 0.96766 0.82451 0.88467 1.23221 0.92978 0.99490 1.00012 1.22771 0.94786 0.97741 0.98169 0.88753 1.20831 0.82810 0.97652 0.95213 1.42724 1.03314 1.88919 1.05372 1.19071 0.86641 1.40062 0.90897 0.92772 1.25569 0.95133 1.02652 1.02581 1.69892 0.99006 1.58850 1.35855 0.85357 0.77286 0.78217 0.80586 1.20649 1.22275 1.17273 1.23468 0.96455 0.96823 1.01730 0.93195 0.93005 0.90163 0.88653 0.89277 0.80187 0.78059 0.92419 0.90773 0.89623 0.85342 0.87309 0.74839 0.87973 0.88847 0.95900 0.95808 0.80141 0.93352 0.92282 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 71.98 0.71 -1.22 16 2 C -0.04 -0.59 6.08 29.85 0.18 -0.41 16 3 C 0.20 3.66 7.16 138.13 0.99 4.65 16 4 N -0.53 -12.11 11.25 -188.13 -2.12 -14.23 16 5 C -0.06 -1.00 11.87 83.52 0.99 -0.01 16 6 C -0.05 -0.61 10.70 83.09 0.89 0.27 16 7 N -0.45 -6.50 2.61 -491.90 -1.28 -7.78 16 8 C 0.15 1.81 2.64 44.99 0.12 1.93 16 9 H 0.10 1.46 6.48 -2.39 -0.02 1.45 16 10 C -0.16 -1.89 8.99 71.98 0.65 -1.24 16 11 C -0.14 -1.34 5.18 29.85 0.15 -1.18 16 12 C 0.52 7.84 7.55 87.66 0.66 8.50 16 13 O -0.57 -12.55 13.57 -3.02 -0.04 -12.59 16 14 N -0.70 -9.45 5.26 -440.04 -2.32 -11.77 16 15 C 0.13 2.25 4.32 45.51 0.20 2.45 16 16 H 0.10 1.90 7.46 -2.39 -0.02 1.88 16 17 C -0.12 -1.97 7.39 31.12 0.23 -1.74 16 18 C -0.12 -2.77 3.63 -10.27 -0.04 -2.81 16 19 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 20 C 0.16 5.65 6.10 86.38 0.53 6.18 16 21 N -0.76 -34.43 5.41 -343.46 -1.86 -36.28 16 22 C -0.24 -13.43 10.48 84.03 0.88 -12.55 16 23 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 25 N -0.99 -63.33 13.97 21.65 0.30 -63.03 16 26 Si 0.96 45.01 27.74 68.60 1.90 46.91 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 30 C -0.15 -3.38 7.43 31.12 0.23 -3.15 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.05 7.08 -2.38 -0.02 1.03 16 36 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.66 7.95 -2.39 -0.02 0.64 16 40 H 0.09 1.30 5.95 -2.39 -0.01 1.28 16 41 H 0.13 0.58 8.09 -2.39 -0.02 0.56 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.41 3.71 8.70 -92.71 -0.81 2.90 16 44 H 0.10 1.67 8.10 -2.38 -0.02 1.65 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.02 0.84 7.84 -2.39 -0.02 0.82 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.37 15.70 5.53 -92.70 -0.51 15.19 16 49 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 50 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.08 2.12 7.90 -2.38 -0.02 2.10 16 Total: -1.00 -77.56 410.42 1.98 -75.58 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.45 Total: 27.08 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 7.84 Total: -3.88 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -7.27 Total: -133.09 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.04 Total: -12.59 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Total: -77.56 1.98 -75.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755472233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.164 kcal (2) G-P(sol) polarization free energy of solvation -77.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds