Wall clock time and date at job start Tue Mar 31 2020 18:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46973 * 2 1 4 4 N 1.30502 * 125.64762 * 270.17489 * 3 2 1 5 5 C 1.34128 * 109.25644 * 180.29396 * 4 3 2 6 6 C 1.34673 * 108.01546 * 359.72677 * 5 4 3 7 7 N 1.35035 * 125.65230 * 90.00088 * 3 2 1 8 8 C 1.46506 * 126.39739 * 359.97438 * 7 3 2 9 9 H 1.08997 * 109.46588 * 359.71138 * 8 7 3 10 10 C 1.53000 * 109.46854 * 239.71602 * 8 7 3 11 11 C 1.53001 * 109.47270 * 119.71278 * 8 7 3 12 12 C 1.50696 * 109.47029 * 185.00315 * 11 8 7 13 13 O 1.21287 * 119.99902 * 359.97438 * 12 11 8 14 14 N 1.34773 * 120.00326 * 180.02562 * 12 11 8 15 15 C 1.46494 * 120.00412 * 179.97438 * 14 12 11 16 16 H 1.09000 * 112.84891 * 334.66742 * 15 14 12 17 17 C 1.53785 * 113.61594 * 105.85944 * 15 14 12 18 18 C 1.54057 * 86.98188 * 89.16142 * 17 15 14 19 19 H 1.08995 * 113.68971 * 270.87027 * 18 17 15 20 20 C 1.53003 * 113.61377 * 139.98149 * 18 17 15 21 21 N 1.46497 * 109.47423 * 87.50873 * 20 18 17 22 22 C 1.36937 * 120.00254 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00240 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00001 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00081 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00313 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47135 * 89.99982 * 26 24 22 28 28 H 1.48495 * 109.47505 * 210.00094 * 26 24 22 29 29 H 1.48501 * 109.46734 * 330.00434 * 26 24 22 30 30 C 1.53777 * 87.07634 * 25.43616 * 18 17 15 31 31 H 1.08995 * 109.47083 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47364 * 300.00054 * 1 2 3 34 34 H 1.09002 * 109.47083 * 239.99604 * 2 1 3 35 35 H 1.08995 * 109.47083 * 119.99831 * 2 1 3 36 36 H 1.08000 * 125.99367 * 179.72373 * 5 4 3 37 37 H 1.08002 * 126.58967 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.46895 * 299.99647 * 10 8 7 39 39 H 1.08990 * 109.47552 * 59.99532 * 10 8 7 40 40 H 1.09002 * 109.46958 * 179.97438 * 10 8 7 41 41 H 1.09001 * 109.46790 * 304.99804 * 11 8 7 42 42 H 1.09000 * 109.46893 * 65.00107 * 11 8 7 43 43 H 0.97004 * 119.99805 * 359.97438 * 14 12 11 44 44 H 1.08998 * 113.61838 * 203.66244 * 17 15 14 45 45 H 1.09000 * 113.61150 * 334.57465 * 17 15 14 46 46 H 1.09008 * 109.47030 * 207.50453 * 20 18 17 47 47 H 1.09000 * 109.47573 * 327.49921 * 20 18 17 48 48 H 0.97003 * 119.99999 * 359.97438 * 21 20 18 49 49 H 0.97004 * 120.00071 * 179.97438 * 25 24 22 50 50 H 1.09009 * 113.60801 * 220.02204 * 30 18 17 51 51 H 1.08994 * 113.69388 * 89.13207 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2828 2.1390 -1.0605 5 6 2.7189 3.3496 -0.6820 6 6 2.7337 3.3849 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1437 1.7374 2.4910 9 1 1.7753 0.7119 2.5198 10 6 1.1477 2.6573 3.2000 11 6 3.4991 1.8124 3.1969 12 6 3.3697 1.2595 4.5927 13 8 2.2988 0.8465 4.9846 14 7 4.4438 1.2248 5.4061 15 6 4.3180 0.6878 6.7632 16 1 3.3032 0.7596 7.1544 17 6 4.9475 -0.7047 6.9356 18 6 6.2598 0.0217 7.2873 19 1 6.8853 0.2395 6.4217 20 6 7.0358 -0.6344 8.4312 21 7 7.9193 -1.6705 7.8908 22 6 8.7177 -2.3972 8.7332 23 1 8.6964 -2.2062 9.7959 24 6 9.5544 -3.3793 8.2212 25 7 10.3222 -4.0775 9.0308 26 14 9.5908 -3.7103 6.3831 27 1 10.6203 -2.8508 5.7456 28 1 9.9207 -5.1382 6.1436 29 1 8.2601 -3.4050 5.7988 30 6 5.3907 1.2091 7.7340 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0076 4.1549 -1.3412 37 1 3.0345 4.2173 1.2831 38 1 1.5161 3.6827 3.1711 39 1 0.1822 2.6038 2.6972 40 1 1.0350 2.3404 4.2368 41 1 4.2313 1.2271 2.6406 42 1 3.8259 2.8511 3.2463 43 1 5.3003 1.5554 5.0928 44 1 4.5278 -1.2740 7.7649 45 1 4.9989 -1.2782 6.0101 46 1 7.6321 0.1197 8.9451 47 1 6.3352 -1.0846 9.1343 48 1 7.9387 -1.8419 6.9362 49 1 10.9066 -4.7641 8.6731 50 1 5.7996 2.1796 7.4526 51 1 5.0914 1.1634 8.7810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755472234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:03 Heat of formation + Delta-G solvation = 47.829100 kcal Electronic energy + Delta-G solvation = -28459.591685 eV Core-core repulsion = 24588.763733 eV Total energy + Delta-G solvation = -3870.827952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.53061 -40.57067 -38.80752 -36.02288 -34.79564 -34.15716 -33.40355 -31.37386 -31.04593 -28.94412 -28.68208 -27.09724 -25.71274 -24.31560 -23.79312 -23.04473 -21.68517 -21.42277 -20.73302 -19.64864 -19.33209 -17.99888 -17.56390 -16.83873 -16.25746 -16.04634 -15.65436 -15.24213 -14.97365 -14.60397 -14.49734 -14.44818 -14.17511 -14.01969 -13.81930 -13.63799 -13.44023 -13.34811 -12.81226 -12.65933 -12.55305 -12.43576 -12.31854 -12.02969 -11.98387 -11.84968 -11.69727 -11.47669 -11.44163 -10.94471 -10.74356 -10.38080 -10.34456 -10.23158 -10.12652 -10.00170 -9.89994 -9.61632 -9.25679 -8.91296 -8.65780 -7.25449 -5.79716 -3.15047 1.71859 2.19622 2.24791 2.86141 2.91589 3.33753 3.35936 3.42133 3.91993 4.06113 4.17848 4.29797 4.44260 4.49464 4.55024 4.57107 4.61439 4.76039 4.84440 4.88524 4.90502 4.90867 4.96260 5.02709 5.20942 5.23553 5.32607 5.40495 5.48966 5.49788 5.51896 5.60319 5.63720 5.69086 5.74831 5.76092 5.80408 5.86742 6.00383 6.01276 6.04335 6.15334 6.42467 6.47749 6.62334 6.74733 6.87156 7.13463 7.82463 7.83672 7.96706 8.39536 9.18736 9.91175 10.11054 11.38788 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002174 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.889110 B =12874.419890 C =13845.876651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C 0.211 3.789 4 N -0.492 5.492 5 C -0.029 4.029 6 C -0.058 4.058 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.112 0.888 10 C -0.165 4.165 11 C -0.154 4.154 12 C 0.522 3.478 13 O -0.536 6.536 14 N -0.706 5.706 15 C 0.115 3.885 16 H 0.101 0.899 17 C -0.141 4.141 18 C -0.119 4.119 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.755 5.755 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.003 3.997 25 N -0.934 5.934 26 Si 0.886 3.114 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 C -0.135 4.135 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.403 0.597 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.070 0.930 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 17.141 -15.511 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.051 4.051 4 N -0.211 5.211 5 C -0.177 4.177 6 C -0.190 4.190 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.130 0.870 10 C -0.222 4.222 11 C -0.195 4.195 12 C 0.308 3.692 13 O -0.414 6.414 14 N -0.357 5.357 15 C 0.010 3.990 16 H 0.119 0.881 17 C -0.179 4.179 18 C -0.138 4.138 19 H 0.104 0.896 20 C 0.039 3.961 21 N -0.401 5.401 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.582 5.582 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 C -0.174 4.174 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.237 0.763 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.582 16.468 -15.669 30.665 hybrid contribution 0.970 0.245 -0.606 1.170 sum -19.612 16.713 -16.275 30.477 Atomic orbital electron populations 1.21740 0.93826 1.02439 1.02474 1.20002 0.96581 0.87410 1.04120 1.23301 1.03907 0.96597 0.81316 1.70252 1.18260 1.04304 1.28244 1.22276 1.06329 0.96336 0.92776 1.22598 1.09506 0.90190 0.96750 1.45601 1.48800 1.11819 1.07000 1.21155 0.95241 1.01672 0.77576 0.87019 1.22273 0.98310 0.98691 1.02954 1.22016 0.98973 1.04298 0.94172 1.20187 0.84137 0.78383 0.86538 1.90704 1.27026 1.47519 1.76102 1.45687 1.12253 1.63478 1.14234 1.21977 1.00253 0.95293 0.81487 0.88081 1.23495 0.96287 0.95677 1.02464 1.22869 0.95428 0.95727 0.99737 0.89594 1.20618 0.91778 0.90484 0.93195 1.42696 1.49098 1.42481 1.05804 1.19071 1.14544 1.11971 0.91843 0.89257 1.24687 0.98896 0.98526 0.97172 1.69703 1.29050 1.26024 1.33461 0.86530 0.77480 0.77473 0.86920 1.21139 1.21702 1.20418 1.23287 0.96007 0.98319 0.99783 0.91885 0.91467 0.92790 0.88623 0.90363 0.81470 0.81199 0.92220 0.91864 0.88379 0.87935 0.87922 0.76286 0.88758 0.91507 0.95505 0.95364 0.80763 0.93052 0.91122 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.62 16 2 C -0.04 -0.32 6.08 -27.88 -0.17 -0.49 16 3 C 0.21 2.09 7.16 -155.42 -1.11 0.98 16 4 N -0.49 -5.76 11.25 -10.82 -0.12 -5.89 16 5 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 6 C -0.06 -0.46 10.70 -16.56 -0.18 -0.63 16 7 N -0.45 -3.74 2.61 -106.83 -0.28 -4.02 16 8 C 0.15 1.07 2.64 -67.93 -0.18 0.89 16 9 H 0.11 0.88 6.49 -51.93 -0.34 0.55 16 10 C -0.16 -1.16 8.99 37.16 0.33 -0.83 16 11 C -0.15 -0.98 5.18 -27.88 -0.14 -1.12 16 12 C 0.52 4.67 7.55 -10.99 -0.08 4.59 16 13 O -0.54 -6.44 13.58 5.55 0.08 -6.37 16 14 N -0.71 -5.98 5.26 -53.02 -0.28 -6.26 16 15 C 0.11 1.17 4.30 -67.12 -0.29 0.88 16 16 H 0.10 1.10 7.50 -51.93 -0.39 0.72 16 17 C -0.14 -1.78 7.45 -25.77 -0.19 -1.98 16 18 C -0.12 -1.58 3.65 -89.66 -0.33 -1.90 16 19 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 20 C 0.17 3.02 6.10 -4.04 -0.02 3.00 16 21 N -0.76 -17.57 5.41 -59.91 -0.32 -17.89 16 22 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 23 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 25 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 26 Si 0.89 21.98 27.74 -169.99 -4.71 17.26 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.47 6.52 56.52 0.37 -6.11 16 30 C -0.14 -1.35 7.38 -25.92 -0.19 -1.54 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.52 7.08 -51.93 -0.37 0.15 16 36 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.06 0.36 7.95 -51.93 -0.41 -0.05 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.83 5.95 -51.93 -0.31 0.52 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.40 2.64 8.70 -40.82 -0.36 2.28 16 44 H 0.09 1.24 7.90 -51.93 -0.41 0.83 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.03 0.53 7.85 -51.93 -0.41 0.12 16 48 H 0.36 8.17 5.53 -40.82 -0.23 7.94 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 51 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 410.50 15.07 6.19 6.19 Total: -1.00 -34.98 410.50 -10.05 -45.04 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.72 Total: 6.82 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.65 Total: -6.33 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.23 Total: -62.62 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: 0.08 Total: -6.37 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.98 -10.05 -45.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755472234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.865 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds