Wall clock time and date at job start Tue Mar 31 2020 18:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46973 * 2 1 4 4 N 1.30502 * 125.64762 * 270.17489 * 3 2 1 5 5 C 1.34128 * 109.25644 * 180.29396 * 4 3 2 6 6 C 1.34673 * 108.01546 * 359.72677 * 5 4 3 7 7 N 1.35035 * 125.65230 * 90.00088 * 3 2 1 8 8 C 1.46506 * 126.39739 * 359.97438 * 7 3 2 9 9 H 1.08997 * 109.46588 * 359.71138 * 8 7 3 10 10 C 1.53000 * 109.46854 * 239.71602 * 8 7 3 11 11 C 1.53001 * 109.47270 * 119.71278 * 8 7 3 12 12 C 1.50696 * 109.47029 * 185.00315 * 11 8 7 13 13 O 1.21287 * 119.99902 * 359.97438 * 12 11 8 14 14 N 1.34773 * 120.00326 * 180.02562 * 12 11 8 15 15 C 1.46494 * 120.00412 * 179.97438 * 14 12 11 16 16 H 1.09000 * 112.84891 * 334.66742 * 15 14 12 17 17 C 1.53785 * 113.61594 * 105.85944 * 15 14 12 18 18 C 1.54057 * 86.98188 * 89.16142 * 17 15 14 19 19 H 1.08995 * 113.68971 * 270.87027 * 18 17 15 20 20 C 1.53003 * 113.61377 * 139.98149 * 18 17 15 21 21 N 1.46497 * 109.47423 * 87.50873 * 20 18 17 22 22 C 1.36937 * 120.00254 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00240 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00001 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00081 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00313 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47135 * 89.99982 * 26 24 22 28 28 H 1.48495 * 109.47505 * 210.00094 * 26 24 22 29 29 H 1.48501 * 109.46734 * 330.00434 * 26 24 22 30 30 C 1.53777 * 87.07634 * 25.43616 * 18 17 15 31 31 H 1.08995 * 109.47083 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47364 * 300.00054 * 1 2 3 34 34 H 1.09002 * 109.47083 * 239.99604 * 2 1 3 35 35 H 1.08995 * 109.47083 * 119.99831 * 2 1 3 36 36 H 1.08000 * 125.99367 * 179.72373 * 5 4 3 37 37 H 1.08002 * 126.58967 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.46895 * 299.99647 * 10 8 7 39 39 H 1.08990 * 109.47552 * 59.99532 * 10 8 7 40 40 H 1.09002 * 109.46958 * 179.97438 * 10 8 7 41 41 H 1.09001 * 109.46790 * 304.99804 * 11 8 7 42 42 H 1.09000 * 109.46893 * 65.00107 * 11 8 7 43 43 H 0.97004 * 119.99805 * 359.97438 * 14 12 11 44 44 H 1.08998 * 113.61838 * 203.66244 * 17 15 14 45 45 H 1.09000 * 113.61150 * 334.57465 * 17 15 14 46 46 H 1.09008 * 109.47030 * 207.50453 * 20 18 17 47 47 H 1.09000 * 109.47573 * 327.49921 * 20 18 17 48 48 H 0.97003 * 119.99999 * 359.97438 * 21 20 18 49 49 H 0.97004 * 120.00071 * 179.97438 * 25 24 22 50 50 H 1.09009 * 113.60801 * 220.02204 * 30 18 17 51 51 H 1.08994 * 113.69388 * 89.13207 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2828 2.1390 -1.0605 5 6 2.7189 3.3496 -0.6820 6 6 2.7337 3.3849 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1437 1.7374 2.4910 9 1 1.7753 0.7119 2.5198 10 6 1.1477 2.6573 3.2000 11 6 3.4991 1.8124 3.1969 12 6 3.3697 1.2595 4.5927 13 8 2.2988 0.8465 4.9846 14 7 4.4438 1.2248 5.4061 15 6 4.3180 0.6878 6.7632 16 1 3.3032 0.7596 7.1544 17 6 4.9475 -0.7047 6.9356 18 6 6.2598 0.0217 7.2873 19 1 6.8853 0.2395 6.4217 20 6 7.0358 -0.6344 8.4312 21 7 7.9193 -1.6705 7.8908 22 6 8.7177 -2.3972 8.7332 23 1 8.6964 -2.2062 9.7959 24 6 9.5544 -3.3793 8.2212 25 7 10.3222 -4.0775 9.0308 26 14 9.5908 -3.7103 6.3831 27 1 10.6203 -2.8508 5.7456 28 1 9.9207 -5.1382 6.1436 29 1 8.2601 -3.4050 5.7988 30 6 5.3907 1.2091 7.7340 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0076 4.1549 -1.3412 37 1 3.0345 4.2173 1.2831 38 1 1.5161 3.6827 3.1711 39 1 0.1822 2.6038 2.6972 40 1 1.0350 2.3404 4.2368 41 1 4.2313 1.2271 2.6406 42 1 3.8259 2.8511 3.2463 43 1 5.3003 1.5554 5.0928 44 1 4.5278 -1.2740 7.7649 45 1 4.9989 -1.2782 6.0101 46 1 7.6321 0.1197 8.9451 47 1 6.3352 -1.0846 9.1343 48 1 7.9387 -1.8419 6.9362 49 1 10.9066 -4.7641 8.6731 50 1 5.7996 2.1796 7.4526 51 1 5.0914 1.1634 8.7810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755472234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:01 Heat of formation + Delta-G solvation = 25.471878 kcal Electronic energy + Delta-G solvation = -28460.561167 eV Core-core repulsion = 24588.763733 eV Total energy + Delta-G solvation = -3871.797434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.16573 -41.35663 -39.70595 -36.76682 -36.37721 -34.72766 -34.48188 -33.21178 -31.81731 -29.56583 -29.47373 -28.41056 -26.63057 -25.11366 -24.78437 -24.09634 -22.96782 -22.32049 -21.41562 -20.50306 -20.19085 -19.48419 -18.56867 -17.52473 -17.04853 -16.70591 -16.66850 -16.32269 -15.97223 -15.83799 -15.64091 -15.18750 -15.11470 -14.97805 -14.65734 -14.44276 -14.43021 -14.25591 -13.94198 -13.83316 -13.53131 -13.39601 -13.22796 -13.07605 -12.87957 -12.66761 -12.54876 -12.52186 -12.23083 -12.18230 -11.99065 -11.88759 -11.71800 -11.40988 -11.19250 -11.10169 -10.90125 -10.82439 -10.58955 -10.03709 -9.28780 -9.28558 -8.04012 -5.37003 1.09700 1.35641 1.39927 1.47486 1.53128 1.62423 2.18628 2.25858 2.47126 3.26789 3.37605 3.46976 3.48277 3.57611 3.64037 3.74282 3.86854 3.90325 3.94303 4.07156 4.11437 4.22411 4.33148 4.39468 4.47268 4.49162 4.53919 4.66692 4.68991 4.72507 4.77505 4.85913 4.86128 4.89887 4.92200 4.96599 4.98925 5.06075 5.13013 5.17019 5.25376 5.26075 5.34912 5.42666 5.66607 5.75687 5.87185 6.20455 6.24882 6.49828 7.07686 7.17483 7.18885 7.85038 8.03606 9.17704 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002174 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.889110 B =12874.419890 C =13845.876651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.195 3.805 4 N -0.530 5.530 5 C -0.057 4.057 6 C -0.047 4.047 7 N -0.446 5.446 8 C 0.148 3.852 9 H 0.102 0.898 10 C -0.158 4.158 11 C -0.143 4.143 12 C 0.523 3.477 13 O -0.569 6.569 14 N -0.699 5.699 15 C 0.129 3.871 16 H 0.096 0.904 17 C -0.147 4.147 18 C -0.116 4.116 19 H 0.095 0.905 20 C 0.161 3.839 21 N -0.758 5.758 22 C -0.236 4.236 23 H 0.054 0.946 24 C -0.068 4.068 25 N -0.985 5.985 26 Si 0.959 3.041 27 H -0.276 1.276 28 H -0.297 1.297 29 H -0.252 1.252 30 C -0.118 4.118 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.181 0.819 37 H 0.203 0.797 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.415 0.585 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.025 0.975 47 H 0.022 0.978 48 H 0.365 0.635 49 H 0.258 0.742 50 H 0.094 0.906 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.413 19.159 -17.049 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.067 4.067 4 N -0.250 5.250 5 C -0.204 4.204 6 C -0.179 4.179 7 N -0.129 5.129 8 C 0.045 3.955 9 H 0.120 0.880 10 C -0.215 4.215 11 C -0.184 4.184 12 C 0.310 3.690 13 O -0.449 6.449 14 N -0.350 5.350 15 C 0.023 3.977 16 H 0.114 0.886 17 C -0.185 4.185 18 C -0.134 4.134 19 H 0.113 0.887 20 C 0.035 3.965 21 N -0.403 5.403 22 C -0.367 4.367 23 H 0.072 0.928 24 C -0.259 4.259 25 N -0.636 5.636 26 Si 0.786 3.214 27 H -0.202 1.202 28 H -0.224 1.224 29 H -0.177 1.177 30 C -0.156 4.156 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.198 0.802 37 H 0.220 0.780 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.252 0.748 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.040 0.960 48 H 0.199 0.801 49 H 0.066 0.934 50 H 0.113 0.887 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.214 18.541 -17.220 33.020 hybrid contribution 1.122 -0.347 -0.012 1.175 sum -20.091 18.194 -17.232 32.119 Atomic orbital electron populations 1.21690 0.93343 1.03153 1.01710 1.20073 0.96967 0.86636 1.04488 1.23617 1.04234 0.97338 0.81546 1.70207 1.19528 1.05602 1.29634 1.22666 1.07280 0.96312 0.94098 1.23071 1.07821 0.90482 0.96560 1.45657 1.48347 1.11848 1.07004 1.21151 0.95952 1.01280 0.77090 0.87956 1.22188 0.98080 0.99364 1.01907 1.21961 0.98436 1.05818 0.92154 1.20573 0.83543 0.77644 0.87254 1.90706 1.28349 1.48931 1.76874 1.45613 1.12897 1.63044 1.13493 1.21723 0.99931 0.93534 0.82533 0.88551 1.23511 0.96425 0.96938 1.01657 1.22824 0.95149 0.97214 0.98260 0.88659 1.20835 0.91228 0.89308 0.95150 1.42725 1.49091 1.42970 1.05541 1.19069 1.14579 1.11925 0.91089 0.92765 1.25571 0.99000 0.98756 1.02623 1.69895 1.30533 1.27182 1.35991 0.85348 0.78797 0.76783 0.80466 1.20163 1.22432 1.17653 1.23208 0.94411 0.97950 1.00043 0.93000 0.90015 0.93094 0.88755 0.89423 0.80181 0.78037 0.90772 0.92503 0.89629 0.87205 0.85289 0.74799 0.89792 0.92451 0.95684 0.96003 0.80149 0.93356 0.88746 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.04 -0.62 6.08 29.85 0.18 -0.44 16 3 C 0.19 3.68 7.16 138.13 0.99 4.67 16 4 N -0.53 -12.15 11.25 -188.13 -2.12 -14.27 16 5 C -0.06 -1.01 11.87 83.52 0.99 -0.02 16 6 C -0.05 -0.61 10.70 83.09 0.89 0.28 16 7 N -0.45 -6.52 2.61 -491.90 -1.28 -7.80 16 8 C 0.15 1.82 2.64 44.99 0.12 1.94 16 9 H 0.10 1.47 6.49 -2.39 -0.02 1.46 16 10 C -0.16 -1.89 8.99 71.98 0.65 -1.24 16 11 C -0.14 -1.33 5.18 29.85 0.15 -1.18 16 12 C 0.52 7.85 7.55 87.66 0.66 8.51 16 13 O -0.57 -12.64 13.58 -3.05 -0.04 -12.68 16 14 N -0.70 -9.44 5.26 -440.05 -2.32 -11.76 16 15 C 0.13 2.27 4.30 45.52 0.20 2.46 16 16 H 0.10 1.89 7.50 -2.39 -0.02 1.87 16 17 C -0.15 -3.44 7.45 31.22 0.23 -3.20 16 18 C -0.12 -2.77 3.65 -10.17 -0.04 -2.81 16 19 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 20 C 0.16 5.65 6.10 86.38 0.53 6.18 16 21 N -0.76 -34.48 5.41 -343.45 -1.86 -36.33 16 22 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 23 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 25 N -0.99 -63.36 13.97 21.65 0.30 -63.06 16 26 Si 0.96 45.07 27.74 68.60 1.90 46.98 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 29 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 30 C -0.12 -1.95 7.38 31.12 0.23 -1.72 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.07 7.08 -2.39 -0.02 1.05 16 36 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.07 0.66 7.95 -2.39 -0.02 0.64 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 1.31 5.95 -2.39 -0.01 1.29 16 41 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.13 0.56 8.09 -2.39 -0.02 0.54 16 43 H 0.42 3.64 8.70 -92.71 -0.81 2.84 16 44 H 0.08 2.13 7.90 -2.39 -0.02 2.11 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.02 0.80 7.85 -2.39 -0.02 0.79 16 48 H 0.37 15.74 5.53 -92.71 -0.51 15.23 16 49 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 50 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.10 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -77.83 410.50 1.98 -75.85 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.45 Total: 26.85 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 7.84 Total: -3.79 kcal Atomic # 7 Polarization: -125.95 SS G_CDS: -7.27 Total: -133.22 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.04 Total: -12.68 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.98 kcal Total: -77.83 1.98 -75.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755472234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.322 kcal (2) G-P(sol) polarization free energy of solvation -77.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds