Wall clock time and date at job start Tue Mar 31 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46949 * 2 1 4 4 N 1.46507 * 109.46975 * 119.99735 * 2 1 3 5 5 C 1.46500 * 120.00227 * 303.44322 * 4 2 1 6 6 C 1.52997 * 109.47100 * 268.53902 * 5 4 2 7 7 N 1.46500 * 109.46709 * 180.02562 * 6 5 4 8 8 C 1.46504 * 120.00035 * 269.99901 * 7 6 5 9 9 C 1.36943 * 120.00175 * 89.99850 * 7 6 5 10 10 H 1.08000 * 119.99855 * 30.05827 * 9 7 6 11 11 C 1.38812 * 120.00114 * 210.05766 * 9 7 6 12 12 N 1.31618 * 119.99794 * 7.24402 * 11 9 7 13 13 Si 1.86796 * 120.00021 * 187.23966 * 11 9 7 14 14 H 1.48503 * 109.46873 * 89.99995 * 13 11 9 15 15 H 1.48504 * 109.47172 * 209.99966 * 13 11 9 16 16 H 1.48498 * 109.47289 * 330.00174 * 13 11 9 17 17 C 1.34777 * 119.99828 * 123.45237 * 4 2 1 18 18 O 1.21609 * 119.99969 * 5.13728 * 17 4 2 19 19 C 1.47429 * 119.99971 * 185.14979 * 17 4 2 20 20 C 1.41282 * 126.41349 * 340.70092 * 19 17 4 21 21 N 1.30448 * 108.02394 * 180.02562 * 20 19 17 22 22 N 1.39936 * 108.89629 * 359.74831 * 21 20 19 23 23 C 1.46495 * 125.75653 * 180.27420 * 22 21 20 24 24 C 1.53001 * 109.47011 * 305.17807 * 23 22 21 25 25 C 1.53000 * 117.49812 * 243.62125 * 24 23 22 26 26 C 1.53001 * 60.00149 * 252.51137 * 25 24 23 27 27 C 1.34268 * 108.48937 * 0.42584 * 22 21 20 28 28 H 1.09005 * 109.46791 * 300.00261 * 1 2 3 29 29 H 1.08997 * 109.47115 * 59.99841 * 1 2 3 30 30 H 1.08997 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47206 * 240.00065 * 2 1 3 32 32 H 1.09010 * 109.46768 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47098 * 299.99545 * 3 2 1 34 34 H 1.08995 * 109.47573 * 60.00278 * 3 2 1 35 35 H 1.09005 * 109.46792 * 28.54165 * 5 4 2 36 36 H 1.09000 * 109.46902 * 148.53586 * 5 4 2 37 37 H 1.09000 * 109.47081 * 299.99640 * 6 5 4 38 38 H 1.08995 * 109.47075 * 60.00222 * 6 5 4 39 39 H 1.08997 * 109.47313 * 94.36855 * 8 7 6 40 40 H 1.09004 * 109.47199 * 214.37023 * 8 7 6 41 41 H 1.08998 * 109.46924 * 334.36919 * 8 7 6 42 42 H 0.97004 * 119.99741 * 179.97438 * 12 11 9 43 43 H 1.08005 * 125.99016 * 359.97438 * 20 19 17 44 44 H 1.08999 * 109.46948 * 65.17662 * 23 22 21 45 45 H 1.09002 * 109.47267 * 185.17922 * 23 22 21 46 46 H 1.08997 * 115.55076 * 29.33444 * 24 23 22 47 47 H 1.09001 * 117.50186 * 359.97438 * 25 24 23 48 48 H 1.09001 * 117.49666 * 145.02519 * 25 24 23 49 49 H 1.09000 * 117.50203 * 252.51273 * 26 25 24 50 50 H 1.08999 * 117.51865 * 107.48329 * 26 25 24 51 51 H 1.07998 * 126.28808 * 179.84450 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6033 -0.2356 2.5255 6 6 2.6134 0.7850 3.0536 7 7 2.1986 1.2395 4.3832 8 6 1.3207 2.4046 4.5181 9 6 2.6314 0.5753 5.4998 10 1 3.5895 0.0767 5.4941 11 6 1.8388 0.5428 6.6389 12 7 0.6148 1.0251 6.6028 13 14 2.5095 -0.1855 8.2229 14 1 3.1724 0.8807 9.0161 15 1 1.3939 -0.7678 9.0113 16 1 3.4954 -1.2481 7.9007 17 6 2.8496 -1.7444 1.0739 18 8 3.2685 -2.0643 -0.0221 19 6 3.2507 -2.5095 2.2685 20 6 3.1786 -2.0699 3.6093 21 7 3.6246 -3.0288 4.3730 22 7 3.9924 -4.1140 3.5697 23 6 4.5348 -5.3880 4.0480 24 6 5.7692 -5.1243 4.9128 25 6 7.1103 -5.6653 4.4133 26 6 6.4157 -6.3252 5.6061 27 6 3.7676 -3.7894 2.2864 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6189 0.2279 2.4599 36 1 1.5591 -1.0877 3.2038 37 1 3.5977 0.3214 3.1193 38 1 2.6575 1.6370 2.3754 39 1 0.2844 2.0731 4.5830 40 1 1.5835 2.9548 5.4217 41 1 1.4412 3.0527 3.6501 42 1 0.0608 1.0021 7.3988 43 1 2.8182 -1.1081 3.9433 44 1 3.7798 -5.9048 4.6405 45 1 4.8141 -6.0070 3.1954 46 1 5.7764 -4.1726 5.4440 47 1 7.1133 -6.2094 3.4689 48 1 8.0003 -5.0693 4.6158 49 1 6.8485 -6.1634 6.5933 50 1 5.9615 -7.3031 5.4466 51 1 3.9528 -4.4162 1.4267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507853692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:59 Heat of formation + Delta-G solvation = 113.809670 kcal Electronic energy + Delta-G solvation = -30486.245673 eV Core-core repulsion = 26618.278853 eV Total energy + Delta-G solvation = -3867.966820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18146 -39.30958 -37.64008 -36.61367 -35.25783 -33.20596 -31.97463 -31.12510 -29.81619 -28.13958 -27.15276 -27.02765 -25.88202 -23.60092 -22.88757 -22.64239 -21.76428 -20.56305 -20.33275 -20.20145 -18.69429 -17.32503 -16.84796 -16.31762 -15.84348 -15.42601 -15.23126 -14.80992 -14.47406 -14.32945 -13.97583 -13.81113 -13.59941 -13.31706 -13.27309 -12.97346 -12.69404 -12.65399 -12.41958 -12.04159 -11.87477 -11.79866 -11.77810 -11.58012 -11.28869 -10.99005 -10.86559 -10.81181 -10.69177 -10.60088 -10.56164 -10.41670 -10.28400 -10.14473 -10.00130 -9.79743 -9.33763 -9.10734 -8.60152 -8.40941 -8.18158 -6.69946 -5.78363 -3.33104 1.83781 2.55640 2.69126 3.38004 3.42698 3.45623 3.51164 3.55202 3.81923 4.25179 4.49200 4.58688 4.69542 4.81904 4.96594 4.96948 5.14448 5.27278 5.30009 5.34794 5.37089 5.37642 5.47515 5.55135 5.59277 5.63093 5.72998 5.77759 5.83368 5.85315 5.87243 5.96655 6.05040 6.07914 6.12282 6.16490 6.30865 6.39510 6.45862 6.53913 6.73411 6.88836 7.00130 7.09684 7.11645 7.31377 7.70820 7.78430 7.87673 8.01206 8.38766 8.67352 9.18868 9.79497 10.31557 11.24471 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007527 B = 0.005467 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3719.141308 B = 5120.755988 C = 8314.699478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 C -0.163 4.163 4 N -0.598 5.598 5 C 0.063 3.937 6 C 0.123 3.877 7 N -0.598 5.598 8 C 0.159 3.841 9 C -0.271 4.271 10 H 0.069 0.931 11 C 0.019 3.981 12 N -0.898 5.898 13 Si 0.897 3.103 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.271 1.271 17 C 0.598 3.402 18 O -0.569 6.569 19 C -0.296 4.296 20 C 0.066 3.934 21 N -0.289 5.289 22 N -0.368 5.368 23 C 0.165 3.835 24 C -0.169 4.169 25 C -0.178 4.178 26 C -0.170 4.170 27 C 0.114 3.886 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.039 0.961 41 H -0.002 1.002 42 H 0.254 0.746 43 H 0.240 0.760 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -9.610 -8.950 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 C -0.221 4.221 4 N -0.329 5.329 5 C -0.062 4.062 6 C -0.005 4.005 7 N -0.321 5.321 8 C 0.015 3.985 9 C -0.400 4.400 10 H 0.087 0.913 11 C -0.182 4.182 12 N -0.541 5.541 13 Si 0.726 3.274 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.196 1.196 17 C 0.388 3.612 18 O -0.450 6.450 19 C -0.311 4.311 20 C -0.121 4.121 21 N -0.107 5.107 22 N -0.146 5.146 23 C 0.044 3.956 24 C -0.187 4.187 25 C -0.215 4.215 26 C -0.208 4.208 27 C -0.037 4.037 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.256 0.744 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.140 0.860 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.117 0.883 50 H 0.115 0.885 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.298 -10.242 -8.095 14.089 hybrid contribution -0.018 -0.163 0.259 0.306 sum 5.279 -10.405 -7.836 14.055 Atomic orbital electron populations 1.22150 0.95234 1.02186 1.02383 1.20953 0.93761 0.93165 0.88959 1.22268 1.01676 0.95907 1.02275 1.47944 1.46977 1.30457 1.07550 1.23238 1.00621 1.00689 0.81676 1.21560 0.95770 0.95396 0.87755 1.43878 1.57731 1.30604 0.99914 1.20847 0.94703 0.86927 0.96040 1.19143 0.99795 1.30301 0.90734 0.91322 1.25172 0.94879 0.98910 0.99210 1.70012 1.07217 1.48601 1.28264 0.86357 0.78271 0.79291 0.83486 1.21467 1.21671 1.19595 1.17303 0.77534 0.79216 0.87113 1.90680 1.56612 1.69842 1.27887 1.20282 1.18986 0.97243 0.94602 1.26273 0.94882 1.00819 0.90107 1.77395 1.20451 0.94725 1.18135 1.48644 1.48193 1.13466 1.04274 1.21264 0.94744 0.80988 0.98628 1.22598 0.92709 1.00315 1.03123 1.23093 0.96116 1.03797 0.98503 1.22959 1.03718 0.96572 0.97540 1.22770 0.96515 0.96218 0.88203 0.91735 0.91800 0.92545 0.88704 0.92327 0.92097 0.91446 0.90558 0.88731 0.93362 0.93068 0.94834 0.94220 0.98343 0.93581 0.74433 0.89137 0.88691 0.86017 0.88639 0.88570 0.88337 0.88532 0.80370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.11 37.16 0.34 -1.70 16 2 C 0.13 1.95 3.24 -67.92 -0.22 1.73 16 3 C -0.16 -2.14 8.37 37.16 0.31 -1.83 16 4 N -0.60 -10.09 2.39 -167.36 -0.40 -10.49 16 5 C 0.06 1.15 4.68 -4.04 -0.02 1.13 16 6 C 0.12 2.44 5.03 -4.04 -0.02 2.42 16 7 N -0.60 -14.04 2.90 -181.12 -0.53 -14.57 16 8 C 0.16 3.68 9.04 59.85 0.54 4.22 16 9 C -0.27 -6.99 8.00 -15.06 -0.12 -7.11 16 10 H 0.07 1.80 7.51 -52.49 -0.39 1.40 16 11 C 0.02 0.50 5.21 -17.43 -0.09 0.41 16 12 N -0.90 -24.89 10.85 55.49 0.60 -24.29 16 13 Si 0.90 21.55 29.56 -169.99 -5.02 16.53 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.60 11.02 7.64 -12.52 -0.10 10.92 16 18 O -0.57 -11.35 16.30 5.27 0.09 -11.26 16 19 C -0.30 -5.33 5.86 -105.07 -0.62 -5.95 16 20 C 0.07 1.31 8.96 -16.98 -0.15 1.15 16 21 N -0.29 -5.60 12.13 30.86 0.37 -5.22 16 22 N -0.37 -5.58 3.65 -60.81 -0.22 -5.80 16 23 C 0.17 1.78 6.77 -4.04 -0.03 1.76 16 24 C -0.17 -1.87 5.92 -90.62 -0.54 -2.41 16 25 C -0.18 -1.59 10.18 -26.73 -0.27 -1.86 16 26 C -0.17 -1.45 10.25 -26.73 -0.27 -1.72 16 27 C 0.11 1.73 11.30 -16.56 -0.19 1.54 16 28 H 0.06 0.86 6.55 -51.93 -0.34 0.52 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.44 6.93 -51.93 -0.36 1.08 16 32 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 35 H 0.08 1.40 6.25 -51.93 -0.32 1.08 16 36 H 0.09 1.94 4.43 -51.93 -0.23 1.71 16 37 H 0.05 1.00 6.66 -51.93 -0.35 0.65 16 38 H 0.05 0.94 5.29 -51.93 -0.27 0.66 16 39 H 0.03 0.83 7.26 -51.93 -0.38 0.45 16 40 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 41 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 42 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.24 5.12 1.34 -52.48 -0.07 5.05 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.73 7.79 -51.93 -0.40 0.32 16 46 H 0.12 1.73 7.89 -51.93 -0.41 1.32 16 47 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -30.81 397.74 -8.57 -39.38 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.01 Total: 7.02 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.44 Total: 2.71 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.17 Total: -60.37 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.81 -8.57 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507853692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.189 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds