Wall clock time and date at job start Tue Mar 31 2020 18:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46949 * 2 1 4 4 N 1.46507 * 109.46975 * 119.99735 * 2 1 3 5 5 C 1.46500 * 120.00227 * 303.44322 * 4 2 1 6 6 C 1.52997 * 109.47100 * 268.53902 * 5 4 2 7 7 N 1.46500 * 109.46709 * 180.02562 * 6 5 4 8 8 C 1.46504 * 120.00035 * 269.99901 * 7 6 5 9 9 C 1.36943 * 120.00175 * 89.99850 * 7 6 5 10 10 H 1.08000 * 119.99855 * 30.05827 * 9 7 6 11 11 C 1.38812 * 120.00114 * 210.05766 * 9 7 6 12 12 N 1.31618 * 119.99794 * 7.24402 * 11 9 7 13 13 Si 1.86796 * 120.00021 * 187.23966 * 11 9 7 14 14 H 1.48503 * 109.46873 * 89.99995 * 13 11 9 15 15 H 1.48504 * 109.47172 * 209.99966 * 13 11 9 16 16 H 1.48498 * 109.47289 * 330.00174 * 13 11 9 17 17 C 1.34777 * 119.99828 * 123.45237 * 4 2 1 18 18 O 1.21609 * 119.99969 * 5.13728 * 17 4 2 19 19 C 1.47429 * 119.99971 * 185.14979 * 17 4 2 20 20 C 1.41282 * 126.41349 * 340.70092 * 19 17 4 21 21 N 1.30448 * 108.02394 * 180.02562 * 20 19 17 22 22 N 1.39936 * 108.89629 * 359.74831 * 21 20 19 23 23 C 1.46495 * 125.75653 * 180.27420 * 22 21 20 24 24 C 1.53001 * 109.47011 * 305.17807 * 23 22 21 25 25 C 1.53000 * 117.49812 * 243.62125 * 24 23 22 26 26 C 1.53001 * 60.00149 * 252.51137 * 25 24 23 27 27 C 1.34268 * 108.48937 * 0.42584 * 22 21 20 28 28 H 1.09005 * 109.46791 * 300.00261 * 1 2 3 29 29 H 1.08997 * 109.47115 * 59.99841 * 1 2 3 30 30 H 1.08997 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47206 * 240.00065 * 2 1 3 32 32 H 1.09010 * 109.46768 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47098 * 299.99545 * 3 2 1 34 34 H 1.08995 * 109.47573 * 60.00278 * 3 2 1 35 35 H 1.09005 * 109.46792 * 28.54165 * 5 4 2 36 36 H 1.09000 * 109.46902 * 148.53586 * 5 4 2 37 37 H 1.09000 * 109.47081 * 299.99640 * 6 5 4 38 38 H 1.08995 * 109.47075 * 60.00222 * 6 5 4 39 39 H 1.08997 * 109.47313 * 94.36855 * 8 7 6 40 40 H 1.09004 * 109.47199 * 214.37023 * 8 7 6 41 41 H 1.08998 * 109.46924 * 334.36919 * 8 7 6 42 42 H 0.97004 * 119.99741 * 179.97438 * 12 11 9 43 43 H 1.08005 * 125.99016 * 359.97438 * 20 19 17 44 44 H 1.08999 * 109.46948 * 65.17662 * 23 22 21 45 45 H 1.09002 * 109.47267 * 185.17922 * 23 22 21 46 46 H 1.08997 * 115.55076 * 29.33444 * 24 23 22 47 47 H 1.09001 * 117.50186 * 359.97438 * 25 24 23 48 48 H 1.09001 * 117.49666 * 145.02519 * 25 24 23 49 49 H 1.09000 * 117.50203 * 252.51273 * 26 25 24 50 50 H 1.08999 * 117.51865 * 107.48329 * 26 25 24 51 51 H 1.07998 * 126.28808 * 179.84450 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6033 -0.2356 2.5255 6 6 2.6134 0.7850 3.0536 7 7 2.1986 1.2395 4.3832 8 6 1.3207 2.4046 4.5181 9 6 2.6314 0.5753 5.4998 10 1 3.5895 0.0767 5.4941 11 6 1.8388 0.5428 6.6389 12 7 0.6148 1.0251 6.6028 13 14 2.5095 -0.1855 8.2229 14 1 3.1724 0.8807 9.0161 15 1 1.3939 -0.7678 9.0113 16 1 3.4954 -1.2481 7.9007 17 6 2.8496 -1.7444 1.0739 18 8 3.2685 -2.0643 -0.0221 19 6 3.2507 -2.5095 2.2685 20 6 3.1786 -2.0699 3.6093 21 7 3.6246 -3.0288 4.3730 22 7 3.9924 -4.1140 3.5697 23 6 4.5348 -5.3880 4.0480 24 6 5.7692 -5.1243 4.9128 25 6 7.1103 -5.6653 4.4133 26 6 6.4157 -6.3252 5.6061 27 6 3.7676 -3.7894 2.2864 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6189 0.2279 2.4599 36 1 1.5591 -1.0877 3.2038 37 1 3.5977 0.3214 3.1193 38 1 2.6575 1.6370 2.3754 39 1 0.2844 2.0731 4.5830 40 1 1.5835 2.9548 5.4217 41 1 1.4412 3.0527 3.6501 42 1 0.0608 1.0021 7.3988 43 1 2.8182 -1.1081 3.9433 44 1 3.7798 -5.9048 4.6405 45 1 4.8141 -6.0070 3.1954 46 1 5.7764 -4.1726 5.4440 47 1 7.1133 -6.2094 3.4689 48 1 8.0003 -5.0693 4.6158 49 1 6.8485 -6.1634 6.5933 50 1 5.9615 -7.3031 5.4466 51 1 3.9528 -4.4162 1.4267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507853692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:57 Heat of formation + Delta-G solvation = 97.037009 kcal Electronic energy + Delta-G solvation = -30486.972990 eV Core-core repulsion = 26618.278853 eV Total energy + Delta-G solvation = -3868.694137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.49754 -40.65488 -38.45246 -38.20957 -36.85403 -34.50724 -33.45434 -32.76252 -31.12963 -29.76249 -28.26788 -28.08499 -27.80150 -25.32105 -24.14969 -23.32690 -22.91283 -22.35595 -21.51530 -21.28009 -20.03035 -18.84623 -18.44208 -17.63445 -17.10687 -16.83101 -16.52441 -16.23259 -15.94518 -15.52362 -15.29889 -15.13339 -14.88832 -14.74888 -14.69986 -14.35941 -14.08928 -13.86306 -13.76870 -13.35363 -13.23260 -13.04090 -12.83586 -12.74171 -12.71320 -12.65304 -12.41834 -12.29662 -12.13347 -12.06247 -11.98304 -11.86745 -11.64807 -11.55205 -11.40306 -11.04926 -10.74988 -10.62647 -10.43944 -9.80870 -9.53503 -8.63886 -7.82687 -5.37667 0.59182 1.23134 1.42632 1.46526 1.47589 1.55760 2.08633 2.40368 2.51902 2.80812 3.29233 3.37546 3.62879 3.81192 3.81980 3.89337 3.97453 4.01860 4.12181 4.16386 4.21192 4.24766 4.34284 4.41957 4.49760 4.57015 4.63343 4.66170 4.71907 4.73968 4.75739 4.81661 4.89831 4.93362 4.95975 5.01958 5.08259 5.17351 5.20336 5.22354 5.35057 5.40179 5.44168 5.53815 5.69236 5.76085 5.78955 5.98453 6.35680 6.47726 6.65488 7.18077 7.26544 7.85200 8.31766 9.18138 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007527 B = 0.005467 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3719.141308 B = 5120.755988 C = 8314.699478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 C -0.158 4.158 4 N -0.594 5.594 5 C 0.084 3.916 6 C 0.132 3.868 7 N -0.610 5.610 8 C 0.172 3.828 9 C -0.261 4.261 10 H 0.060 0.940 11 C -0.027 4.027 12 N -0.922 5.922 13 Si 0.945 3.055 14 H -0.285 1.285 15 H -0.293 1.293 16 H -0.275 1.275 17 C 0.596 3.404 18 O -0.587 6.587 19 C -0.323 4.323 20 C 0.051 3.949 21 N -0.326 5.326 22 N -0.356 5.356 23 C 0.157 3.843 24 C -0.195 4.195 25 C -0.169 4.169 26 C -0.154 4.154 27 C 0.134 3.866 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.032 0.968 42 H 0.249 0.751 43 H 0.219 0.781 44 H 0.098 0.902 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.096 0.904 50 H 0.121 0.879 51 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -11.255 -10.810 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 C -0.216 4.216 4 N -0.325 5.325 5 C -0.042 4.042 6 C 0.005 3.995 7 N -0.334 5.334 8 C 0.027 3.973 9 C -0.391 4.391 10 H 0.078 0.922 11 C -0.224 4.224 12 N -0.567 5.567 13 Si 0.775 3.225 14 H -0.212 1.212 15 H -0.220 1.220 16 H -0.200 1.200 17 C 0.387 3.613 18 O -0.470 6.470 19 C -0.338 4.338 20 C -0.135 4.135 21 N -0.146 5.146 22 N -0.133 5.133 23 C 0.038 3.962 24 C -0.214 4.214 25 C -0.206 4.206 26 C -0.192 4.192 27 C -0.019 4.019 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.235 0.765 44 H 0.116 0.884 45 H 0.156 0.844 46 H 0.099 0.901 47 H 0.136 0.864 48 H 0.108 0.892 49 H 0.114 0.886 50 H 0.139 0.861 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.975 -11.882 -9.959 16.615 hybrid contribution -0.127 0.280 0.777 0.835 sum 5.849 -11.602 -9.182 15.910 Atomic orbital electron populations 1.22105 0.93669 1.02145 1.03354 1.21198 0.95000 0.93613 0.87540 1.22219 1.01007 0.95025 1.03301 1.47943 1.46590 1.30323 1.07649 1.22764 0.99911 0.99334 0.82159 1.21538 0.95367 0.96242 0.86362 1.44027 1.57656 1.30899 1.00783 1.20643 0.93406 0.86928 0.96325 1.19202 0.99234 1.29104 0.91531 0.92186 1.25674 0.95295 1.00025 1.01399 1.70125 1.07960 1.50214 1.28412 0.85591 0.77413 0.78502 0.81036 1.21207 1.21990 1.19977 1.17404 0.77448 0.79431 0.86998 1.90657 1.57440 1.70475 1.28379 1.20403 1.20981 0.98751 0.93689 1.25951 0.95797 1.00570 0.91206 1.77283 1.21513 0.96119 1.19690 1.48932 1.46792 1.13595 1.04030 1.21736 0.94642 0.79366 1.00458 1.22429 0.94324 0.99868 1.04786 1.23197 0.94453 1.03201 0.99712 1.23069 1.02305 0.96396 0.97396 1.23318 0.94129 0.95423 0.89023 0.92523 0.88994 0.93125 0.89090 0.93318 0.89219 0.92210 0.90415 0.90802 0.94505 0.91214 0.96763 0.96731 0.94910 0.94114 0.76529 0.88371 0.84430 0.90137 0.86374 0.89180 0.88583 0.86106 0.76493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.11 71.98 0.66 -2.97 16 2 C 0.13 3.53 3.24 44.99 0.15 3.67 16 3 C -0.16 -3.82 8.37 71.98 0.60 -3.21 16 4 N -0.59 -19.83 2.39 -801.66 -1.92 -21.74 16 5 C 0.08 3.11 4.68 86.38 0.40 3.51 16 6 C 0.13 5.25 5.03 86.38 0.43 5.68 16 7 N -0.61 -29.10 2.90 -726.93 -2.11 -31.21 16 8 C 0.17 7.98 9.04 127.77 1.15 9.14 16 9 C -0.26 -13.83 8.00 84.03 0.67 -13.16 16 10 H 0.06 3.26 7.51 -2.91 -0.02 3.24 16 11 C -0.03 -1.45 5.21 84.86 0.44 -1.01 16 12 N -0.92 -52.47 10.85 21.65 0.24 -52.23 16 13 Si 0.95 45.59 29.56 68.60 2.03 47.61 16 14 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 15 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 17 C 0.60 21.71 7.64 86.66 0.66 22.37 16 18 O -0.59 -22.76 16.30 -4.06 -0.07 -22.82 16 19 C -0.32 -11.60 5.86 -20.16 -0.12 -11.71 16 20 C 0.05 2.07 8.96 85.65 0.77 2.84 16 21 N -0.33 -12.96 12.13 -56.28 -0.68 -13.64 16 22 N -0.36 -10.42 3.65 -346.30 -1.26 -11.68 16 23 C 0.16 3.03 6.77 86.38 0.58 3.62 16 24 C -0.20 -4.12 5.92 -10.79 -0.06 -4.18 16 25 C -0.17 -2.61 10.18 30.59 0.31 -2.30 16 26 C -0.15 -2.27 10.25 30.60 0.31 -1.96 16 27 C 0.13 3.82 11.30 84.27 0.95 4.77 16 28 H 0.06 1.42 6.55 -2.38 -0.02 1.41 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 2.61 6.93 -2.39 -0.02 2.60 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.54 6.17 -2.39 -0.01 1.52 16 35 H 0.08 2.86 6.25 -2.38 -0.01 2.84 16 36 H 0.07 3.13 4.43 -2.39 -0.01 3.12 16 37 H 0.04 1.56 6.66 -2.39 -0.02 1.54 16 38 H 0.07 2.50 5.29 -2.39 -0.01 2.49 16 39 H 0.01 0.71 7.26 -2.39 -0.02 0.69 16 40 H 0.01 0.71 7.61 -2.39 -0.02 0.70 16 41 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.22 9.73 1.34 -2.91 0.00 9.73 16 44 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.14 1.48 7.79 -2.39 -0.02 1.46 16 46 H 0.08 2.39 7.89 -2.39 -0.02 2.37 16 47 H 0.12 1.30 8.03 -2.39 -0.02 1.28 16 48 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.22 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -69.22 397.74 5.08 -64.15 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.93 Total: 26.48 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 7.92 Total: 15.09 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.74 Total: -130.51 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.82 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.22 5.08 -64.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507853692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.183 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds