Wall clock time and date at job start Tue Mar 31 2020 19:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35664 * 117.00199 * 2 1 4 4 C 1.40222 * 120.14333 * 275.04847 * 3 2 1 5 5 C 1.47402 * 120.18710 * 359.97438 * 4 3 2 6 6 O 1.21509 * 120.00057 * 0.02562 * 5 4 3 7 7 O 1.34751 * 119.99850 * 180.02562 * 5 4 3 8 8 C 1.39728 * 119.62008 * 180.02562 * 4 3 2 9 9 C 1.37913 * 119.88966 * 0.02562 * 8 4 3 10 10 Cl 1.73598 * 119.86021 * 179.97438 * 9 8 4 11 11 C 1.38621 * 120.27963 * 359.97438 * 9 8 4 12 12 C 1.38092 * 120.38766 * 359.97438 * 11 9 8 13 13 S 1.76197 * 119.94490 * 179.97438 * 12 11 9 14 14 O 1.42103 * 106.40299 * 357.44702 * 13 12 11 15 15 O 1.42102 * 106.40283 * 130.36770 * 13 12 11 16 16 N 1.65602 * 107.21979 * 243.90468 * 13 12 11 17 17 C 1.36935 * 119.99745 * 63.66559 * 16 13 12 18 18 H 1.07999 * 120.00272 * 5.10498 * 17 16 13 19 19 C 1.38811 * 119.99854 * 185.10380 * 17 16 13 20 20 N 1.31611 * 120.00156 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99840 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47585 * 59.99829 * 21 19 17 23 23 H 1.48505 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47344 * 299.99957 * 21 19 17 25 25 H 1.08996 * 109.46865 * 185.55879 * 1 2 3 26 26 H 1.08994 * 109.47115 * 305.55835 * 1 2 3 27 27 H 1.09000 * 109.46741 * 65.55973 * 1 2 3 28 28 H 0.96705 * 117.00094 * 179.97438 * 7 5 4 29 29 H 1.08003 * 120.05486 * 179.97438 * 8 4 3 30 30 H 1.07998 * 119.80170 * 180.28075 * 11 9 8 31 31 H 0.96996 * 120.00363 * 243.65949 * 16 13 12 32 32 H 0.97006 * 120.00291 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 2.2696 1.8846 -1.2079 5 6 1.8384 1.2854 -2.4837 6 8 1.2862 0.2031 -2.4907 7 8 2.0566 1.9380 -3.6423 8 6 2.9054 3.1288 -1.1952 9 6 3.3077 3.6828 0.0019 10 17 4.0982 5.2283 0.0167 11 6 3.0834 3.0109 1.1935 12 6 2.4551 1.7812 1.1944 13 16 2.1765 0.9370 2.7157 14 8 2.7580 1.7409 3.7330 15 8 0.8087 0.5518 2.7163 16 7 3.0570 -0.4647 2.6669 17 6 4.4236 -0.4128 2.5987 18 1 4.9316 0.5383 2.6598 19 6 5.1561 -1.5826 2.4510 20 7 4.5371 -2.7417 2.3770 21 14 7.0205 -1.5118 2.3586 22 1 7.5554 -0.9087 3.6057 23 1 7.5609 -2.8862 2.2027 24 1 7.4275 -0.6843 1.1946 25 1 -0.3633 -1.0228 0.0995 26 1 -0.3633 0.5976 0.8360 27 1 -0.3633 0.4252 -0.9356 28 1 1.7565 1.5051 -4.4533 29 1 3.0823 3.6552 -2.1215 30 1 3.3975 3.4540 2.1269 31 1 2.6046 -1.3225 2.6867 32 1 5.0490 -3.5592 2.2734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040605455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:20 Heat of formation + Delta-G solvation = -194.497759 kcal Electronic energy + Delta-G solvation = -25327.450590 eV Core-core repulsion = 21213.090787 eV Total energy + Delta-G solvation = -4114.359803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 335.015 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.97241 -40.35072 -39.01666 -37.89785 -37.35702 -37.03721 -36.67063 -36.48415 -33.05277 -32.87596 -31.47400 -28.08610 -26.46229 -26.02746 -24.47195 -22.57624 -20.54961 -20.09205 -19.52003 -19.17290 -18.44943 -18.25345 -17.65367 -17.09774 -17.06248 -16.55140 -16.46167 -16.30278 -16.06201 -15.39243 -15.07822 -14.87983 -14.54446 -13.97388 -13.82736 -13.74577 -13.11234 -13.00483 -12.96537 -12.90539 -12.80250 -12.72419 -12.46509 -12.36492 -12.31131 -12.10286 -11.91492 -11.78991 -11.61526 -11.13968 -10.79323 -10.19080 -9.93196 -8.36769 -5.88075 -0.82670 -0.59642 -0.26009 0.82179 1.15098 1.48569 1.52693 1.58342 1.80316 2.00608 2.24718 2.47284 2.63086 2.87218 3.20076 3.50920 3.57633 3.63067 3.81329 4.07636 4.29819 4.34613 4.40072 4.48712 4.59449 4.74169 4.82184 5.03287 5.09025 5.47042 5.57472 6.14319 6.72041 6.87851 6.91380 7.29474 8.80007 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.005826 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.571279 B = 4804.647088 C = 5280.595758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.340 6.340 3 C 0.252 3.748 4 C -0.179 4.179 5 C 0.536 3.464 6 O -0.519 6.519 7 O -0.496 6.496 8 C 0.018 3.982 9 C -0.079 4.079 10 Cl -0.034 7.034 11 C 0.027 3.973 12 C -0.699 4.699 13 S 2.640 3.360 14 O -0.988 6.988 15 O -1.000 7.000 16 N -0.950 5.950 17 C -0.301 4.301 18 H 0.109 0.891 19 C -0.011 4.011 20 N -0.909 5.909 21 Si 0.979 3.021 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.263 1.263 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.437 0.563 29 H 0.191 0.809 30 H 0.166 0.834 31 H 0.408 0.592 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 12.249 -11.147 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.257 6.257 3 C 0.205 3.795 4 C -0.182 4.182 5 C 0.380 3.620 6 O -0.409 6.409 7 O -0.311 6.311 8 C 0.000 4.000 9 C -0.107 4.107 10 Cl -0.004 7.004 11 C 0.007 3.993 12 C -0.781 4.781 13 S 2.730 3.270 14 O -0.978 6.978 15 O -0.989 6.989 16 N -0.702 5.702 17 C -0.440 4.440 18 H 0.127 0.873 19 C -0.215 4.215 20 N -0.551 5.551 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.188 1.188 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.300 0.700 29 H 0.208 0.792 30 H 0.183 0.817 31 H 0.243 0.757 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.161 12.490 -10.188 16.425 hybrid contribution 0.564 -0.766 -1.127 1.475 sum -2.597 11.724 -11.314 16.499 Atomic orbital electron populations 1.23252 0.75138 1.05390 1.01280 1.85936 1.22712 1.23009 1.93999 1.18352 0.88014 0.82878 0.90270 1.19531 1.10011 0.97813 0.90840 1.20155 0.75365 0.82131 0.84360 1.90956 1.40302 1.21754 1.87871 1.84470 1.76985 1.52363 1.17239 1.21702 0.88307 0.91144 0.98860 1.20865 1.04115 0.91318 0.94367 1.98385 1.78198 1.25033 1.98831 1.21194 0.88314 0.90132 0.99626 1.31930 1.15523 1.08647 1.22021 1.05129 0.72819 0.73083 0.75920 1.93453 1.79059 1.69941 1.55352 1.93394 1.34949 1.82620 1.87948 1.51451 1.14608 1.20864 1.83246 1.19545 0.80822 0.96033 1.47555 0.87290 1.26085 1.04531 0.94535 0.96391 1.69790 1.38374 0.98539 1.48402 0.85199 0.77247 0.77770 0.79612 1.18679 1.20526 1.18815 0.87446 0.91648 0.92315 0.69969 0.79234 0.81688 0.75719 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.78 113.37 1.11 2.54 16 2 O -0.34 -13.83 8.11 -64.18 -0.52 -14.35 16 3 C 0.25 9.41 5.69 22.85 0.13 9.54 16 4 C -0.18 -5.42 5.88 -20.02 -0.12 -5.54 16 5 C 0.54 14.61 8.24 70.24 0.58 15.19 16 6 O -0.52 -17.35 14.17 26.81 0.38 -16.97 16 7 O -0.50 -8.34 12.68 -56.61 -0.72 -9.06 16 8 C 0.02 0.44 9.39 22.55 0.21 0.66 16 9 C -0.08 -2.07 6.31 22.28 0.14 -1.92 16 10 Cl -0.03 -0.71 28.94 -2.72 -0.08 -0.79 16 11 C 0.03 0.87 9.32 22.33 0.21 1.07 16 12 C -0.70 -26.56 5.80 22.34 0.13 -26.43 16 13 S 2.64 116.10 5.26 -56.49 -0.30 115.80 16 14 O -0.99 -46.05 16.68 -128.00 -2.14 -48.18 16 15 O -1.00 -45.02 15.10 -123.32 -1.86 -46.88 16 16 N -0.95 -46.91 5.74 -54.27 -0.31 -47.22 16 17 C -0.30 -15.37 9.63 84.03 0.81 -14.56 16 18 H 0.11 5.24 7.82 -2.91 -0.02 5.22 16 19 C -0.01 -0.56 5.50 84.86 0.47 -0.10 16 20 N -0.91 -49.42 13.06 21.65 0.28 -49.13 16 21 Si 0.98 40.19 29.55 68.60 2.03 42.21 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 23 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 26 H 0.06 2.26 6.38 -2.39 -0.02 2.25 16 27 H 0.06 1.78 6.82 -2.39 -0.02 1.76 16 28 H 0.44 3.17 9.11 -74.05 -0.67 2.49 16 29 H 0.19 3.13 7.61 -2.91 -0.02 3.10 16 30 H 0.17 5.00 7.32 -2.91 -0.02 4.98 16 31 H 0.41 20.95 8.04 -96.75 -0.78 20.17 16 32 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -67.56 315.69 0.21 -67.35 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.22 Total: 26.78 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.67 Total: -19.55 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -0.03 Total: -96.35 kcal Atomic # 8 Polarization: -130.58 SS G_CDS: -4.86 Total: -135.44 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: 116.10 SS G_CDS: -0.30 Total: 115.80 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -67.56 0.21 -67.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040605455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.151 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds