Wall clock time and date at job start Tue Mar 31 2020 18:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00290 * 2 1 4 4 H 1.48504 * 109.46968 * 240.00352 * 3 2 1 5 5 H 1.48502 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47512 * 119.99818 * 3 2 1 7 7 C 1.38805 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99893 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47029 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00170 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00188 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00228 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47231 * 180.02562 * 14 13 11 16 16 C 1.33360 * 125.19444 * 89.99568 * 15 14 13 17 17 C 1.38455 * 114.93077 * 180.02562 * 16 15 14 18 18 C 1.33481 * 114.89319 * 359.97438 * 17 16 15 19 19 Br 1.89093 * 125.20585 * 179.97438 * 18 17 16 20 20 S 1.75876 * 109.58389 * 0.02562 * 18 17 16 21 21 H 0.96997 * 119.99995 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47274 * 60.00052 * 10 9 7 23 23 H 1.09002 * 109.47489 * 299.99571 * 10 9 7 24 24 H 0.97002 * 119.99619 * 359.97438 * 13 11 10 25 25 H 1.09005 * 109.47066 * 59.99841 * 14 13 11 26 26 H 1.09002 * 109.46579 * 300.00044 * 14 13 11 27 27 H 1.08001 * 122.53400 * 0.02605 * 16 15 14 28 28 H 1.07999 * 122.55457 * 179.73677 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5024 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 2.3304 -7.7152 0.0008 15 6 3.4848 -8.6838 0.0009 16 6 4.0736 -9.1777 1.0908 17 6 5.1176 -10.0531 0.8442 18 6 5.3758 -10.2700 -0.4473 19 35 6.7328 -11.4070 -1.1117 20 16 4.2616 -9.3353 -1.4363 21 1 -0.4850 0.8400 -0.0004 22 1 3.1245 -3.7314 0.8906 23 1 3.1245 -3.7314 -0.8895 24 1 3.8009 -6.1835 -0.0003 25 1 1.7214 -7.8751 -0.8890 26 1 1.7221 -7.8752 0.8910 27 1 3.7597 -8.9148 2.0902 28 1 5.6826 -10.5216 1.6365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041825654.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:02 Heat of formation + Delta-G solvation = -5.401062 kcal Electronic energy + Delta-G solvation = -15079.491512 eV Core-core repulsion = 12201.656742 eV Total energy + Delta-G solvation = -2877.834770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 334.939 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39234 -38.27093 -34.82161 -32.44276 -32.32276 -30.51863 -28.66822 -25.79386 -25.37670 -23.33358 -20.49884 -19.67348 -18.17774 -17.49107 -16.36392 -16.20131 -15.50172 -15.22288 -14.81380 -14.10313 -13.78383 -13.71503 -13.37277 -13.24319 -12.83046 -12.56947 -12.45836 -11.79179 -11.35004 -11.26394 -11.06068 -11.04534 -10.78442 -10.73234 -9.84774 -9.61990 -9.09173 -9.03257 -8.99713 -8.92606 -8.26617 -6.52095 -6.22836 -3.93862 0.25257 0.62305 1.32575 1.45850 2.11311 3.01342 3.04454 3.23006 3.27329 3.31554 3.72495 4.19195 4.24953 4.78880 4.90404 5.10517 5.12367 5.21214 5.43812 5.50800 5.65983 5.68401 5.85142 5.91436 6.10950 6.43807 7.57684 7.59742 8.33787 8.50909 9.22428 10.84561 Molecular weight = 334.94amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.002058 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.543177 B =13604.857743 C =14113.019787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.737 5.737 14 C 0.191 3.809 15 C -0.183 4.183 16 C -0.119 4.119 17 C -0.091 4.091 18 C -0.208 4.208 19 Br 0.007 6.993 20 S 0.178 5.822 21 H 0.269 0.731 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.401 0.599 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.152 0.848 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.040 -25.443 -0.671 29.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.389 6.389 13 N -0.393 5.393 14 C 0.066 3.934 15 C -0.302 4.302 16 C -0.151 4.151 17 C -0.125 4.125 18 C -0.405 4.405 19 Br 0.091 6.909 20 S 0.442 5.558 21 H 0.079 0.921 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.235 0.765 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.170 0.830 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.138 -25.915 -2.508 29.163 hybrid contribution 2.465 1.306 1.679 3.256 sum 15.604 -24.609 -0.829 29.151 Atomic orbital electron populations 1.70005 1.05960 1.27606 1.46716 1.24987 0.95021 0.99015 0.94471 0.86224 0.79245 0.81218 0.78818 1.19927 1.20789 1.19924 1.22831 0.94896 0.91639 1.59176 0.90940 1.85393 1.04783 0.96310 1.96741 1.23535 1.06693 0.95062 1.05081 1.20357 0.86438 0.86195 0.74983 1.90715 1.15299 1.85512 1.47380 1.46102 1.10283 1.04576 1.78293 1.19637 0.90931 0.78906 1.03946 1.24814 1.03813 1.05253 0.96310 1.20182 0.96453 0.98373 1.00054 1.20229 0.98298 0.98980 0.95003 1.26210 1.05445 1.09304 0.99562 1.96738 1.46075 1.61472 1.86636 1.84600 1.25109 1.38646 1.07407 0.92100 0.89086 0.89093 0.76521 0.90194 0.89183 0.83019 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 15 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 15 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 15 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.54 -15.17 9.50 30.94 0.29 -14.88 15 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 15 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 15 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 15 11 C 0.53 9.59 7.85 -10.98 -0.09 9.51 15 12 O -0.52 -11.31 15.86 5.56 0.09 -11.23 15 13 N -0.74 -9.41 5.55 -61.47 -0.34 -9.75 15 14 C 0.19 2.10 6.16 -5.20 -0.03 2.07 15 15 C -0.18 -1.65 5.88 -36.02 -0.21 -1.86 15 16 C -0.12 -0.94 10.05 -41.21 -0.41 -1.35 15 17 C -0.09 -0.70 10.11 -41.17 -0.42 -1.11 15 18 C -0.21 -1.76 6.97 29.07 0.20 -1.56 15 19 Br 0.01 0.05 34.07 -68.01 -2.32 -2.26 15 20 S 0.18 1.57 23.33 -107.50 -2.51 -0.94 15 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.09 1.65 8.14 -51.91 -0.42 1.22 15 23 H 0.09 1.65 8.14 -51.92 -0.42 1.23 15 24 H 0.40 4.17 8.46 -40.82 -0.35 3.82 15 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.15 0.99 8.06 -52.49 -0.42 0.57 15 28 H 0.15 0.88 8.06 -52.49 -0.42 0.46 15 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -32.93 304.90 -9.95 -42.88 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.43 Total: -0.51 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.54 Total: -9.96 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.39 Total: -35.01 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -4.72 Total: -4.73 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -2.32 Total: -2.26 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.93 -9.95 -42.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041825654.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.480 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds