Wall clock time and date at job start Tue Mar 31 2020 19:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39241 * 119.05331 * 2 1 4 4 C 1.39019 * 119.56719 * 179.97438 * 3 2 1 5 5 C 1.47663 * 121.11847 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99646 * 174.18697 * 5 4 3 7 7 O 1.34711 * 119.99796 * 354.18377 * 5 4 3 8 8 C 1.34784 * 116.99608 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00082 * 359.72753 * 8 7 5 10 10 C 1.38916 * 119.99933 * 180.02562 * 8 7 5 11 11 N 1.31350 * 119.99880 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99817 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47399 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46755 * 120.00078 * 12 10 8 15 15 H 1.48493 * 109.46774 * 239.99881 * 12 10 8 16 16 C 1.41898 * 117.75795 * 0.27368 * 4 3 2 17 17 C 1.40074 * 121.35249 * 180.29369 * 16 4 3 18 18 C 1.36262 * 119.65733 * 179.68438 * 17 16 4 19 19 C 1.39427 * 120.81823 * 359.71911 * 18 17 16 20 20 Br 1.89095 * 119.48893 * 180.02562 * 19 18 17 21 21 C 1.36172 * 121.02168 * 0.03137 * 19 18 17 22 22 C 1.40669 * 119.73595 * 359.96928 * 21 19 18 23 23 N 1.31011 * 119.05278 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46640 * 90.00578 * 1 2 3 25 25 H 1.09001 * 109.46872 * 209.99997 * 1 2 3 26 26 H 1.08995 * 109.46960 * 330.00298 * 1 2 3 27 27 H 1.07997 * 120.21587 * 359.95208 * 3 2 1 28 28 H 0.97001 * 120.00079 * 179.97438 * 11 10 8 29 29 H 1.07998 * 120.16969 * 359.40220 * 17 16 4 30 30 H 1.07998 * 119.59054 * 179.74699 * 18 17 16 31 31 H 1.07994 * 120.13232 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1832 1.2172 0.0000 4 6 3.5733 1.2297 0.0005 5 6 4.3251 2.5006 0.0000 6 8 5.5354 2.4905 0.1071 7 8 3.6690 3.6711 -0.1193 8 6 4.4147 4.7939 -0.1120 9 1 5.4878 4.7288 -0.0092 10 6 3.8023 6.0351 -0.2306 11 7 2.4967 6.1146 -0.3503 12 14 4.8358 7.5912 -0.2213 13 1 6.2695 7.2324 -0.0762 14 1 4.6354 8.3260 -1.4961 15 1 4.4239 8.4521 0.9164 16 6 4.2454 -0.0200 -0.0049 17 6 5.6441 -0.0953 0.0014 18 6 6.2537 -1.3140 0.0023 19 6 5.5024 -2.4885 0.0030 20 35 6.3874 -4.1596 0.0051 21 6 4.1412 -2.4508 0.0021 22 6 3.4775 -1.2106 0.0011 23 7 2.1432 -1.1453 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6313 2.1455 -0.0008 28 1 2.0690 6.9813 -0.4327 29 1 6.2363 0.8078 0.0008 30 1 7.3322 -1.3708 0.0030 31 1 3.5734 -3.3695 0.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052054083.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:57 Heat of formation + Delta-G solvation = -21.065517 kcal Electronic energy + Delta-G solvation = -19740.755406 eV Core-core repulsion = 16419.877647 eV Total energy + Delta-G solvation = -3320.877759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 334.994 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86823 -38.99987 -37.36016 -35.60602 -33.23322 -32.52591 -32.29933 -31.03296 -29.31727 -27.57410 -25.98270 -24.04555 -22.85958 -22.47359 -20.22367 -18.16968 -17.72127 -17.16742 -16.89823 -15.59345 -15.04836 -14.94460 -14.65930 -14.40415 -14.33299 -13.89700 -13.41065 -13.17975 -13.00386 -12.65228 -12.16584 -11.92377 -11.86635 -11.63215 -11.47013 -11.27946 -10.82314 -10.56070 -10.53671 -10.40056 -10.11744 -9.98862 -9.82594 -8.88378 -8.85991 -8.49451 -8.14828 -6.73406 -4.31435 0.22231 0.80139 1.49987 1.79205 2.82432 2.99796 3.04236 3.12047 3.53176 3.64771 4.15898 4.23703 4.24481 4.77092 4.87067 4.90242 5.00008 5.11787 5.21401 5.32224 5.62850 5.65725 5.73061 5.93760 5.98203 6.05145 6.09463 6.27742 6.38590 6.55177 6.78619 6.86836 7.14679 7.65840 7.98523 8.45241 8.74290 9.52318 10.42846 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.003243 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.268030 B = 8633.223016 C =10107.784735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 C -0.127 4.127 4 C -0.021 4.021 5 C 0.422 3.578 6 O -0.546 6.546 7 O -0.191 6.191 8 C -0.367 4.367 9 H 0.104 0.896 10 C 0.043 3.957 11 N -0.844 5.844 12 Si 0.949 3.051 13 H -0.262 1.262 14 H -0.273 1.273 15 H -0.273 1.273 16 C -0.070 4.070 17 C -0.077 4.077 18 C -0.117 4.117 19 C -0.067 4.067 20 Br -0.055 7.055 21 C -0.071 4.071 22 C 0.134 3.866 23 N -0.474 5.474 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.157 0.843 28 H 0.276 0.724 29 H 0.180 0.820 30 H 0.135 0.865 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -15.475 0.428 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.008 3.992 3 C -0.148 4.148 4 C -0.030 4.030 5 C 0.272 3.728 6 O -0.446 6.446 7 O -0.097 6.097 8 C -0.443 4.443 9 H 0.122 0.878 10 C -0.164 4.164 11 N -0.479 5.479 12 Si 0.772 3.228 13 H -0.186 1.186 14 H -0.198 1.198 15 H -0.198 1.198 16 C -0.073 4.073 17 C -0.095 4.095 18 C -0.136 4.136 19 C -0.148 4.148 20 Br 0.030 6.970 21 C -0.092 4.092 22 C 0.011 3.989 23 N -0.186 5.186 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.175 0.825 28 H 0.086 0.914 29 H 0.197 0.803 30 H 0.152 0.848 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.101 -16.738 0.429 16.780 hybrid contribution 0.663 1.851 -0.017 1.967 sum 1.764 -14.887 0.412 14.997 Atomic orbital electron populations 1.20790 0.88131 1.03800 1.03472 1.21460 0.97272 0.87643 0.92835 1.22543 0.93887 1.00182 0.98191 1.19723 0.93426 0.91414 0.98461 1.20325 0.86026 0.84592 0.81907 1.90433 1.14895 1.86713 1.52556 1.83851 1.40091 1.13064 1.72664 1.21544 0.92488 0.80444 1.49825 0.87824 1.25512 0.96382 0.98850 0.95702 1.69942 1.08750 1.26525 1.42687 0.85514 0.79623 0.79186 0.78455 1.18578 1.19814 1.19823 1.18740 0.95094 0.92192 1.01261 1.22239 0.93785 0.99943 0.93579 1.20901 1.00350 0.90577 1.01818 1.21485 0.94553 0.91682 1.07079 1.96679 1.78396 1.24199 1.97711 1.20585 0.91986 0.97001 0.99649 1.18537 0.89126 0.91938 0.99266 1.67578 1.08257 1.28998 1.13722 0.89968 0.90348 0.90004 0.82499 0.91433 0.80311 0.84750 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.14 36.01 0.37 -0.82 16 2 C 0.16 2.49 6.78 -82.57 -0.56 1.93 16 3 C -0.13 -2.28 9.30 -38.92 -0.36 -2.64 16 4 C -0.02 -0.43 5.94 -104.36 -0.62 -1.05 16 5 C 0.42 10.18 7.81 34.58 0.27 10.45 16 6 O -0.55 -13.69 12.77 -19.28 -0.25 -13.93 16 7 O -0.19 -5.13 9.10 -21.38 -0.19 -5.33 16 8 C -0.37 -10.09 9.65 30.98 0.30 -9.79 16 9 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 10 C 0.04 1.10 5.50 -17.51 -0.10 1.01 16 11 N -0.84 -22.69 13.67 55.49 0.76 -21.93 16 12 Si 0.95 19.64 29.55 -169.99 -5.02 14.62 16 13 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 16 C -0.07 -1.32 5.77 -106.50 -0.61 -1.93 16 17 C -0.08 -1.36 9.25 -39.60 -0.37 -1.72 16 18 C -0.12 -1.73 9.69 -39.85 -0.39 -2.11 16 19 C -0.07 -0.94 6.18 -39.88 -0.25 -1.18 16 20 Br -0.06 -0.64 33.65 -68.01 -2.29 -2.93 16 21 C -0.07 -1.05 9.68 -39.41 -0.38 -1.43 16 22 C 0.13 2.29 6.61 -84.87 -0.56 1.73 16 23 N -0.47 -7.87 10.19 -7.26 -0.07 -7.95 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.16 2.77 7.70 -52.49 -0.40 2.37 16 28 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.18 3.46 4.98 -52.49 -0.26 3.20 16 30 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -29.21 300.84 -8.06 -37.28 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -2.27 Total: 3.20 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.26 Total: -7.56 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.68 Total: -29.88 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.44 Total: -19.26 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.21 -8.06 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052054083.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.211 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds