Wall clock time and date at job start Tue Mar 31 2020 18:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36020 * 116.99989 * 2 1 4 4 C 1.38690 * 119.98397 * 0.02562 * 3 2 1 5 5 C 1.38110 * 120.02638 * 180.02562 * 4 3 2 6 6 C 1.38880 * 119.99788 * 359.97438 * 5 4 3 7 7 N 1.39931 * 120.01405 * 180.02562 * 6 5 4 8 8 S 1.65605 * 119.99839 * 133.84284 * 7 6 5 9 9 O 1.42102 * 106.40182 * 184.90665 * 8 7 6 10 10 O 1.42098 * 106.39940 * 51.98836 * 8 7 6 11 11 C 1.76201 * 107.21883 * 298.44910 * 8 7 6 12 12 H 1.07995 * 119.99863 * 11.47472 * 11 8 7 13 13 C 1.37881 * 119.99875 * 191.19876 * 11 8 7 14 14 N 1.31521 * 119.99961 * 0.28028 * 13 11 8 15 15 Si 1.86795 * 119.99723 * 180.27381 * 13 11 8 16 16 H 1.48493 * 109.47171 * 60.00407 * 15 13 11 17 17 H 1.48507 * 109.47004 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47166 * 300.00066 * 15 13 11 19 19 C 1.38835 * 119.96840 * 0.28017 * 6 5 4 20 20 C 1.38208 * 119.96874 * 359.42516 * 19 6 5 21 21 Br 1.89103 * 119.99702 * 180.27732 * 20 19 6 22 22 H 1.09006 * 109.47075 * 59.99591 * 1 2 3 23 23 H 1.08991 * 109.47387 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47007 * 299.99718 * 1 2 3 25 25 H 1.07997 * 119.98621 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.99639 * 179.97438 * 5 4 3 27 27 H 0.96999 * 120.00735 * 313.84547 * 7 6 5 28 28 H 0.96992 * 119.99696 * 179.97438 * 14 13 11 29 29 H 1.08004 * 120.01435 * 179.70676 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9169 3.6059 0.0000 6 6 3.3038 3.6796 -0.0005 7 7 3.9385 4.9267 -0.0005 8 16 5.1998 5.2138 1.0334 9 8 5.5447 6.5832 0.8752 10 8 6.1249 4.1523 0.8422 11 6 4.5790 5.0433 2.6736 12 1 3.6009 4.6162 2.8390 13 6 5.3441 5.4498 3.7461 14 7 6.5352 5.9700 3.5446 15 14 4.6890 5.2620 5.4853 16 1 4.4191 3.8280 5.7604 17 1 5.6959 5.7708 6.4511 18 1 3.4312 6.0386 5.6271 19 6 4.0601 2.5153 -0.0064 20 6 3.4322 1.2841 0.0003 21 35 4.4617 -0.3021 0.0002 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2124 2.3178 0.0014 26 1 1.3280 4.5112 0.0000 27 1 3.6397 5.6231 -0.6061 28 1 7.0733 6.2563 4.2990 29 1 5.1387 2.5718 -0.0116 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088330944.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:27 Heat of formation + Delta-G solvation = -95.869024 kcal Electronic energy + Delta-G solvation = -18897.277659 eV Core-core repulsion = 15572.767033 eV Total energy + Delta-G solvation = -3324.510626 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 334.966 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.09436 -37.83569 -35.37165 -34.14184 -34.01071 -33.12283 -31.96875 -29.26177 -28.58743 -26.79355 -26.19422 -22.43656 -21.82090 -19.18030 -18.13307 -17.71648 -17.03767 -16.34837 -15.94490 -15.75508 -15.05143 -14.36106 -14.12539 -13.78443 -13.68746 -13.34499 -12.93700 -12.82752 -12.09084 -12.03244 -11.43031 -11.35162 -11.22553 -11.00323 -10.84445 -10.65657 -10.45636 -10.43285 -10.18709 -9.90775 -9.70672 -9.28335 -8.91709 -8.61629 -7.62533 -6.74950 -5.38976 1.26087 1.45537 1.90975 2.15983 3.06798 3.11226 3.17043 3.23849 3.74930 4.01009 4.45899 4.62676 4.81739 4.92515 5.06062 5.15171 5.35593 5.37147 5.53691 5.67717 5.76780 6.06016 6.25348 6.25850 6.41360 6.82398 6.86400 7.25460 7.30309 7.70665 7.91107 8.82814 10.18410 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.004881 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.291653 B = 5734.829923 C = 5849.727524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.128 3.872 4 C -0.187 4.187 5 C -0.088 4.088 6 C 0.149 3.851 7 N -1.073 6.073 8 S 2.701 3.299 9 O -0.988 6.988 10 O -1.000 7.000 11 C -1.014 5.014 12 H 0.103 0.897 13 C 0.134 3.866 14 N -0.841 5.841 15 Si 0.921 3.079 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.264 1.264 19 C -0.083 4.083 20 C -0.099 4.099 21 Br -0.041 7.041 22 H 0.054 0.946 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.413 0.587 28 H 0.292 0.708 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 -10.429 -6.896 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.080 3.920 4 C -0.208 4.208 5 C -0.111 4.111 6 C 0.051 3.949 7 N -0.817 5.817 8 S 2.803 3.197 9 O -0.979 6.979 10 O -0.990 6.990 11 C -1.148 5.148 12 H 0.121 0.879 13 C -0.085 4.085 14 N -0.470 5.470 15 Si 0.744 3.256 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.106 4.106 20 C -0.180 4.180 21 Br 0.045 6.955 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.247 0.753 28 H 0.103 0.897 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.204 -10.987 -7.024 16.558 hybrid contribution -1.480 0.724 1.147 2.008 sum -11.684 -10.263 -5.877 16.625 Atomic orbital electron populations 1.23052 0.78645 1.03817 1.01329 1.86186 1.21022 1.26035 1.88694 1.18520 0.90592 0.84907 0.97997 1.20963 0.99798 0.91286 1.08716 1.21100 0.93359 0.97739 0.98870 1.17203 0.91157 0.85109 1.01463 1.54076 1.54986 1.17648 1.55037 1.01012 0.71317 0.72797 0.74615 1.93396 1.81566 1.35395 1.87519 1.93334 1.60380 1.57909 1.87395 1.30357 1.14789 1.56008 1.13618 0.87872 1.24734 0.93027 0.89202 1.01510 1.69906 1.09116 1.32748 1.35205 0.86187 0.79435 0.79809 0.80133 1.18671 1.20023 1.18827 1.21869 1.03170 0.88888 0.96624 1.20756 0.90743 0.92890 1.13593 1.96629 1.70205 1.30888 1.97812 0.92708 0.88330 0.92583 0.84645 0.84713 0.75322 0.89728 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 15 2 O -0.31 -4.07 9.83 -19.81 -0.19 -4.26 15 3 C 0.13 1.93 6.68 -39.22 -0.26 1.67 15 4 C -0.19 -2.48 9.03 -39.46 -0.36 -2.83 15 5 C -0.09 -1.30 9.96 -39.39 -0.39 -1.69 15 6 C 0.15 2.71 6.14 -83.70 -0.51 2.20 15 7 N -1.07 -20.75 5.77 32.44 0.19 -20.56 15 8 S 2.70 69.29 5.05 -107.50 -0.54 68.75 15 9 O -0.99 -28.08 17.58 -57.17 -1.01 -29.08 15 10 O -1.00 -27.55 15.16 -57.17 -0.87 -28.42 15 11 C -1.01 -27.39 9.61 30.60 0.29 -27.09 15 12 H 0.10 2.59 7.81 -52.49 -0.41 2.18 15 13 C 0.13 3.68 5.46 -17.82 -0.10 3.58 15 14 N -0.84 -24.24 12.84 55.43 0.71 -23.53 15 15 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 15 16 H -0.26 -5.69 7.11 56.52 0.40 -5.29 15 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 18 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 19 C -0.08 -1.60 8.96 -39.37 -0.35 -1.95 15 20 C -0.10 -1.72 6.23 -39.40 -0.25 -1.97 15 21 Br -0.04 -0.65 33.15 -68.01 -2.25 -2.91 15 22 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 15 23 H 0.10 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.06 0.43 7.66 -51.93 -0.40 0.03 15 25 H 0.14 1.31 6.29 -52.49 -0.33 0.98 15 26 H 0.14 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.41 6.54 8.96 -34.47 -0.31 6.24 15 28 H 0.29 7.60 8.31 -40.82 -0.34 7.26 15 29 H 0.17 3.73 5.72 -52.48 -0.30 3.43 15 LS Contribution 290.74 15.07 4.38 4.38 Total: -1.00 -33.89 290.74 -7.66 -41.55 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -2.12 Total: 5.56 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -0.93 Total: -26.88 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.90 Total: -44.09 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -2.07 Total: -61.76 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 69.29 SS G_CDS: -0.54 Total: 68.75 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.25 Total: -2.91 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.89 -7.66 -41.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088330944.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.315 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds