Wall clock time and date at job start Tue Mar 31 2020 17:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99985 * 2 1 4 4 C 1.46904 * 110.99572 * 123.95381 * 2 1 3 5 5 C 1.53002 * 109.47152 * 66.04521 * 4 2 1 6 6 C 1.52997 * 109.46782 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46940 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99752 * 270.00591 * 7 6 5 9 9 C 1.50708 * 109.46853 * 264.63395 * 8 7 6 10 10 H 1.07999 * 119.99702 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99934 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00020 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99751 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47165 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46742 * 120.00220 * 13 11 9 16 16 H 1.48496 * 109.47030 * 240.00117 * 13 11 9 17 17 C 1.34774 * 119.99995 * 90.00115 * 7 6 5 18 18 O 1.21270 * 120.00060 * 4.64543 * 17 7 6 19 19 C 1.50700 * 119.99649 * 184.64134 * 17 7 6 20 20 H 1.08998 * 109.55112 * 329.19011 * 19 17 7 21 21 C 1.53151 * 109.50741 * 89.30957 * 19 17 7 22 22 C 1.53270 * 109.49274 * 189.41263 * 21 19 17 23 23 N 1.46472 * 108.79376 * 309.61560 * 22 21 19 24 24 C 1.36312 * 127.77763 * 197.13711 * 23 22 21 25 25 C 1.34855 * 106.69198 * 179.91719 * 24 23 22 26 26 N 1.34299 * 108.07019 * 0.02875 * 25 24 23 27 27 C 1.30011 * 109.23763 * 0.04074 * 26 25 24 28 28 C 1.51038 * 127.45581 * 179.91495 * 27 26 25 29 29 H 1.08998 * 109.47017 * 296.05225 * 1 2 3 30 30 H 1.09002 * 109.46747 * 56.04947 * 1 2 3 31 31 H 1.09002 * 109.47063 * 176.04580 * 1 2 3 32 32 H 1.08999 * 109.46708 * 183.95384 * 3 2 1 33 33 H 1.09002 * 109.47505 * 303.94734 * 3 2 1 34 34 H 1.08994 * 109.47417 * 63.95689 * 3 2 1 35 35 H 1.08999 * 109.47099 * 306.04521 * 4 2 1 36 36 H 1.09002 * 109.46555 * 186.04300 * 4 2 1 37 37 H 1.08999 * 109.47118 * 60.00012 * 5 4 2 38 38 H 1.08996 * 109.46968 * 300.00026 * 5 4 2 39 39 H 1.08999 * 109.46874 * 60.00365 * 6 5 4 40 40 H 1.08996 * 109.47800 * 300.00018 * 6 5 4 41 41 H 1.08994 * 109.47433 * 24.62926 * 8 7 6 42 42 H 1.08997 * 109.47463 * 144.63631 * 8 7 6 43 43 H 0.97000 * 119.99538 * 179.97438 * 12 11 9 44 44 H 1.08997 * 109.46690 * 309.41596 * 21 19 17 45 45 H 1.08996 * 109.46908 * 69.40755 * 21 19 17 46 46 H 1.09000 * 109.58518 * 69.40621 * 22 21 19 47 47 H 1.08996 * 109.58504 * 189.68448 * 22 21 19 48 48 H 1.07996 * 126.65758 * 359.94701 * 24 23 22 49 49 H 1.08000 * 125.96967 * 180.02562 * 25 24 23 50 50 H 1.08994 * 109.71671 * 76.26593 * 28 27 26 51 51 H 1.08994 * 109.71679 * 315.66185 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2427 0.9704 6 6 2.1801 -3.0405 2.1549 7 7 1.8321 -4.4545 1.9945 8 6 0.5755 -4.9667 2.5468 9 6 0.8309 -5.5633 3.9070 10 1 1.8293 -5.5607 4.3189 11 6 -0.2101 -6.1115 4.6259 12 7 -1.4259 -6.1142 4.1244 13 14 0.1067 -6.8516 6.3115 14 1 1.5482 -6.7247 6.6449 15 1 -0.7013 -6.1313 7.3281 16 1 -0.2751 -8.2866 6.3017 17 6 2.6678 -5.2840 1.3388 18 8 3.7452 -4.8805 0.9553 19 6 2.2633 -6.7129 1.0824 20 1 1.6137 -7.0580 1.8867 21 6 1.5166 -6.8014 -0.2518 22 6 0.9030 -8.1978 -0.4028 23 7 1.9390 -9.1994 -0.1401 24 6 1.9238 -10.5223 -0.4682 25 6 3.0874 -11.0437 -0.0290 26 7 3.7917 -10.0593 0.5527 27 6 3.1120 -8.9527 0.4920 28 6 3.5157 -7.5965 1.0203 29 1 -0.3633 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3431 -0.0709 33 1 1.5899 1.9163 -0.8525 34 1 1.7045 1.8723 0.9233 35 1 1.5610 -0.3873 2.0628 36 1 3.0797 -0.6612 1.1756 37 1 2.0657 -2.6214 0.0452 38 1 0.5471 -2.3475 0.9323 39 1 1.7460 -2.6618 3.0803 40 1 3.2644 -2.9356 2.1927 41 1 -0.1413 -4.1506 2.6369 42 1 0.1727 -5.7326 1.8840 43 1 -2.1581 -6.5002 4.6300 44 1 0.7252 -6.0524 -0.2756 45 1 2.2129 -6.6202 -1.0706 46 1 0.0888 -8.3183 0.3118 47 1 0.5211 -8.3214 -1.4161 48 1 1.1335 -11.0504 -0.9809 49 1 3.3985 -12.0732 -0.1278 50 1 4.2508 -7.1461 0.3534 51 1 3.9408 -7.7023 2.0183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119358384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:40 Heat of formation + Delta-G solvation = 20.809502 kcal Electronic energy + Delta-G solvation = -29928.881988 eV Core-core repulsion = 26056.882378 eV Total energy + Delta-G solvation = -3871.999610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06536 -39.52710 -37.69187 -36.00104 -35.26635 -33.18231 -32.76910 -31.54479 -29.61242 -28.44177 -27.67080 -27.46621 -26.09269 -24.31901 -23.20075 -22.96167 -21.82763 -21.15419 -20.66562 -18.88949 -18.16591 -16.88059 -16.81435 -16.44594 -15.85978 -15.57332 -15.32754 -15.06988 -14.84550 -14.51337 -14.38800 -14.06116 -13.93078 -13.65464 -13.56147 -13.37715 -12.99830 -12.53004 -12.46110 -12.34128 -12.18251 -11.88164 -11.83344 -11.73014 -11.65606 -11.51119 -11.27266 -11.21698 -10.99000 -10.91443 -10.85599 -10.61615 -10.36096 -10.09842 -9.81127 -9.72023 -9.34471 -9.09697 -8.65571 -8.39935 -8.08667 -7.82410 -6.28815 -4.36397 2.29067 2.99220 3.16737 3.21517 3.26580 3.32015 3.39859 3.67219 4.00922 4.26010 4.60391 4.70661 4.79277 4.84519 5.03584 5.05301 5.10035 5.15599 5.22252 5.32914 5.37203 5.44600 5.48035 5.52350 5.60301 5.63390 5.63464 5.71658 5.74357 5.77939 5.83470 5.86841 5.93473 5.94749 5.98266 6.09663 6.25977 6.41427 6.45320 6.55265 6.56323 6.66696 6.98189 6.99152 7.00829 7.04607 7.39342 7.43855 7.67634 7.94708 8.21232 8.36890 8.69630 8.90838 9.33065 10.77487 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.004015 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.136491 B = 6971.554026 C = 9203.541702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.128 4.128 6 C 0.120 3.880 7 N -0.592 5.592 8 C 0.237 3.763 9 C -0.540 4.540 10 H 0.063 0.937 11 C 0.067 3.933 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.529 3.471 18 O -0.567 6.567 19 C -0.115 4.115 20 H 0.122 0.878 21 C -0.118 4.118 22 C 0.106 3.894 23 N -0.454 5.454 24 C -0.061 4.061 25 C -0.036 4.036 26 N -0.495 5.495 27 C 0.223 3.777 28 C -0.017 4.017 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.171 0.829 49 H 0.166 0.834 50 H 0.099 0.901 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 4.036 -9.655 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.167 4.167 6 C -0.004 4.004 7 N -0.322 5.322 8 C 0.118 3.882 9 C -0.578 4.578 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.529 5.529 13 Si 0.720 3.280 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.316 3.684 18 O -0.448 6.448 19 C -0.136 4.136 20 H 0.140 0.860 21 C -0.156 4.156 22 C -0.016 4.016 23 N -0.137 5.137 24 C -0.194 4.194 25 C -0.185 4.185 26 N -0.214 5.214 27 C -0.040 4.040 28 C -0.056 4.056 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.188 0.812 49 H 0.183 0.817 50 H 0.117 0.883 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.832 3.988 -9.912 10.840 hybrid contribution -1.417 -0.108 1.436 2.020 sum 0.415 3.880 -8.476 9.331 Atomic orbital electron populations 1.22440 0.87419 1.02721 1.00131 1.61980 1.08090 1.13461 1.43718 1.22365 1.00753 0.89028 1.00203 1.22081 1.00121 0.93876 0.90918 1.21943 1.01479 0.93336 0.99924 1.21223 1.00719 0.81092 0.97363 1.48169 1.22773 1.07917 1.53326 1.19451 0.79781 0.95216 0.93787 1.21556 0.95212 1.39049 1.02030 0.91920 1.24917 0.94843 0.95558 0.98262 1.69918 0.99773 1.44925 1.38253 0.86501 0.78727 0.78977 0.83749 1.19484 1.20807 1.20756 1.20048 0.83813 0.87021 0.77479 1.90601 1.22804 1.77705 1.53690 1.21434 0.98476 0.93841 0.99897 0.85984 1.21752 1.01006 0.95496 0.97337 1.22009 0.89893 0.86892 1.02841 1.45469 1.16367 1.08529 1.43332 1.22488 1.02707 0.84315 1.09896 1.22297 0.92915 0.99102 1.04144 1.70008 1.31240 0.98349 1.21788 1.23337 0.84122 0.97012 0.99519 1.20035 0.97165 0.85561 1.02874 0.95649 0.91764 0.90780 0.91421 0.91618 0.95822 0.94671 0.90711 0.91146 0.91729 0.90643 0.90766 0.94508 0.94579 0.92537 0.88750 0.90505 0.88859 0.89180 0.81164 0.81670 0.88295 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.07 0.56 0.79 16 2 N -0.55 -6.70 5.02 -251.26 -1.26 -7.97 16 3 C 0.02 0.25 9.57 60.06 0.57 0.82 16 4 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 5 C -0.13 -1.89 5.46 -26.73 -0.15 -2.03 16 6 C 0.12 2.04 5.42 -4.04 -0.02 2.02 16 7 N -0.59 -11.37 2.47 -175.06 -0.43 -11.81 16 8 C 0.24 5.13 4.79 -5.19 -0.02 5.10 16 9 C -0.54 -13.26 8.68 -34.44 -0.30 -13.56 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.25 13.29 55.43 0.74 -22.52 16 13 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 C 0.53 10.15 6.68 -10.99 -0.07 10.08 16 18 O -0.57 -11.93 15.50 5.57 0.09 -11.84 16 19 C -0.11 -1.98 1.72 -91.49 -0.16 -2.13 16 20 H 0.12 2.38 6.02 -51.93 -0.31 2.07 16 21 C -0.12 -1.65 5.01 -26.51 -0.13 -1.78 16 22 C 0.11 1.34 6.98 -3.92 -0.03 1.31 16 23 N -0.45 -6.84 3.14 -113.75 -0.36 -7.19 16 24 C -0.06 -0.82 11.64 -16.76 -0.20 -1.02 16 25 C -0.04 -0.55 11.87 -17.67 -0.21 -0.76 16 26 N -0.50 -9.02 11.24 -10.61 -0.12 -9.14 16 27 C 0.22 3.88 7.65 -155.23 -1.19 2.69 16 28 C -0.02 -0.29 5.41 -27.51 -0.15 -0.44 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 31 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 32 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16 39 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 40 H 0.07 1.29 7.36 -51.93 -0.38 0.91 16 41 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 42 H 0.04 0.79 6.05 -51.93 -0.31 0.47 16 43 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 44 H 0.09 1.27 7.69 -51.93 -0.40 0.87 16 45 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 49 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 50 H 0.10 1.71 7.47 -51.93 -0.39 1.32 16 51 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -29.85 405.62 -10.62 -40.48 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.76 Total: 5.33 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.61 Total: 3.42 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -1.43 Total: -58.63 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.85 -10.62 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119358384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.286 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds