Wall clock time and date at job start Tue Mar 31 2020 19:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48504 * 109.46793 * 270.00209 * 3 2 1 5 5 H 1.48503 * 109.46997 * 30.00023 * 3 2 1 6 6 H 1.48500 * 109.47073 * 150.00469 * 3 2 1 7 7 C 1.39040 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00149 * 0.02562 * 7 2 1 9 9 N 1.36856 * 120.00047 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00214 * 180.02562 * 9 7 2 11 11 O 1.21685 * 119.99736 * 359.97438 * 10 9 7 12 12 C 1.46953 * 120.00089 * 180.02562 * 10 9 7 13 13 N 1.36815 * 126.79783 * 359.97165 * 12 10 9 14 14 H 0.96997 * 125.06652 * 359.74300 * 13 12 10 15 15 N 1.28415 * 109.87000 * 179.97438 * 13 12 10 16 16 C 1.31631 * 110.86413 * 0.02562 * 15 13 12 17 17 C 1.48435 * 126.20101 * 179.97438 * 16 15 13 18 18 C 1.39315 * 120.11775 * 144.77077 * 17 16 15 19 19 C 1.38022 * 119.87902 * 179.71960 * 18 17 16 20 20 C 1.38316 * 120.12040 * 0.52926 * 19 18 17 21 21 C 1.38322 * 120.23691 * 359.76792 * 20 19 18 22 22 C 1.38024 * 120.11871 * 359.95314 * 21 20 19 23 23 C 1.38398 * 126.80196 * 179.97438 * 12 10 9 24 24 Br 1.89104 * 127.36759 * 359.97438 * 23 12 10 25 25 H 0.97001 * 119.99548 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99815 * 359.97438 * 9 7 2 27 27 H 1.08001 * 120.06114 * 359.97438 * 18 17 16 28 28 H 1.08005 * 119.94267 * 180.27675 * 19 18 17 29 29 H 1.07997 * 119.88303 * 179.74332 * 20 19 18 30 30 H 1.08002 * 119.94000 * 179.97438 * 21 20 19 31 31 H 1.08004 * 120.05895 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5454 1.4401 0.6999 7 6 2.0089 -1.2041 0.0005 8 1 1.4689 -2.1394 0.0005 9 7 3.3774 -1.2042 0.0000 10 6 4.0513 -2.3714 0.0000 11 8 3.4428 -3.4252 0.0010 12 6 5.5208 -2.3714 0.0000 13 7 6.3404 -1.2759 -0.0005 14 1 6.0385 -0.3541 -0.0046 15 7 7.5689 -1.6498 0.0002 16 6 7.6592 -2.9630 0.0007 17 6 8.9143 -3.7555 0.0010 18 6 8.9799 -4.9608 0.6966 19 6 10.1477 -5.6965 0.6888 20 6 11.2550 -5.2338 0.0012 21 6 11.1972 -4.0347 -0.6860 22 6 10.0327 -3.2938 -0.6896 23 6 6.3499 -3.4796 0.0005 24 35 5.8340 -5.2989 0.0020 25 1 -0.4849 0.8401 0.0004 26 1 3.8624 -0.3642 -0.0011 27 1 8.1173 -5.3208 1.2375 28 1 10.1982 -6.6332 1.2240 29 1 12.1680 -5.8105 0.0011 30 1 12.0649 -3.6777 -1.2210 31 1 9.9886 -2.3579 -1.2268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126671030.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:20 Heat of formation + Delta-G solvation = 70.730626 kcal Electronic energy + Delta-G solvation = -19500.109514 eV Core-core repulsion = 16215.505085 eV Total energy + Delta-G solvation = -3284.604429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.39195 -39.00814 -38.28110 -34.41138 -33.22108 -32.02237 -31.66390 -30.87240 -29.72933 -29.10788 -25.53858 -23.66934 -22.81487 -21.87220 -20.41886 -19.80277 -19.29056 -17.61771 -16.89477 -15.71399 -15.68569 -15.27195 -15.05809 -14.55628 -14.00268 -13.59139 -13.52286 -13.49311 -13.27196 -13.01785 -12.78899 -12.38351 -11.48304 -11.44693 -11.26993 -11.13408 -10.94483 -10.86110 -10.26440 -9.95295 -9.75847 -9.64979 -8.98153 -8.77956 -8.64720 -8.49311 -8.31443 -6.62408 -4.08288 1.02260 1.37431 1.42966 1.91159 2.57121 2.78036 2.87105 2.95584 2.98468 3.80562 3.82371 3.86734 4.04644 4.48471 4.82005 4.90857 5.01441 5.04165 5.09186 5.16290 5.40517 5.55950 5.62356 5.82670 5.99651 6.07758 6.43817 6.45836 6.50093 6.89884 6.91337 7.23995 7.79349 7.91568 8.26077 8.62152 9.05630 9.43870 10.48633 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.004019 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.085381 B = 6965.901360 C = 8153.033918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.047 3.953 3 Si 0.878 3.122 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.301 4.301 8 H 0.130 0.870 9 N -0.564 5.564 10 C 0.493 3.507 11 O -0.536 6.536 12 C 0.048 3.952 13 N -0.382 5.382 14 H 0.447 0.553 15 N -0.269 5.269 16 C 0.093 3.907 17 C -0.004 4.004 18 C -0.094 4.094 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.092 4.092 23 C -0.154 4.154 24 Br 0.014 6.986 25 H 0.280 0.720 26 H 0.365 0.635 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.511 -5.583 0.016 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.429 4.429 8 H 0.147 0.853 9 N -0.202 5.202 10 C 0.278 3.722 11 O -0.415 6.415 12 C -0.084 4.084 13 N -0.097 5.097 14 H 0.293 0.707 15 N -0.101 5.101 16 C -0.067 4.067 17 C -0.006 4.006 18 C -0.114 4.114 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.111 4.111 23 C -0.245 4.245 24 Br 0.098 6.902 25 H 0.091 0.909 26 H 0.198 0.802 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.244 -5.854 0.016 20.115 hybrid contribution -0.037 1.788 0.000 1.788 sum 19.207 -4.066 0.016 19.633 Atomic orbital electron populations 1.69586 1.05734 1.28266 1.45916 1.25125 0.95599 0.98234 0.96997 0.86699 0.79802 0.83853 0.79278 1.19031 1.19408 1.19682 1.19531 0.78534 0.97229 1.47653 0.85296 1.42148 1.08036 1.05503 1.64506 1.16263 0.82649 0.85460 0.87786 1.90795 1.66296 1.29878 1.54555 1.22214 0.93940 0.86442 1.05799 1.43559 1.02891 1.09247 1.54045 0.70703 1.73319 1.01596 1.13990 1.21164 1.20135 0.91939 0.88946 1.05649 1.17671 0.90009 0.93889 0.99026 1.21377 0.98514 0.93495 0.98007 1.21046 0.92837 0.99941 0.99975 1.21207 0.98454 0.96358 0.97529 1.21047 0.97729 0.95332 1.00162 1.21181 0.92001 0.99627 0.98284 1.22088 0.92963 0.92562 1.16901 1.96577 1.92113 1.03834 1.97664 0.90936 0.80241 0.85096 0.85709 0.86123 0.85928 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.26 13.95 55.50 0.77 -22.49 16 2 C 0.05 1.19 5.50 -17.45 -0.10 1.09 16 3 Si 0.88 17.66 27.74 -169.99 -4.71 12.95 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -4.84 6.52 56.52 0.37 -4.48 16 7 C -0.30 -7.91 10.16 -15.01 -0.15 -8.06 16 8 H 0.13 3.87 7.38 -52.49 -0.39 3.49 16 9 N -0.56 -12.65 5.08 -12.09 -0.06 -12.71 16 10 C 0.49 11.12 7.75 -12.73 -0.10 11.02 16 11 O -0.54 -13.82 15.10 5.20 0.08 -13.74 16 12 C 0.05 0.91 7.14 -82.06 -0.59 0.32 16 13 N -0.38 -6.00 6.84 33.47 0.23 -5.78 16 14 H 0.45 5.66 8.20 -190.47 -1.56 4.10 16 15 N -0.27 -4.28 12.14 33.41 0.41 -3.87 16 16 C 0.09 1.52 6.74 -82.80 -0.56 0.96 16 17 C 0.00 -0.06 5.83 -104.90 -0.61 -0.67 16 18 C -0.09 -1.20 8.93 -39.26 -0.35 -1.55 16 19 C -0.12 -1.23 10.03 -39.63 -0.40 -1.63 16 20 C -0.12 -1.09 10.04 -39.52 -0.40 -1.49 16 21 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 22 C -0.09 -1.11 9.75 -39.26 -0.38 -1.50 16 23 C -0.15 -2.80 6.65 -38.57 -0.26 -3.05 16 24 Br 0.01 0.24 30.16 -68.01 -2.05 -1.81 16 25 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.36 6.99 4.92 -40.82 -0.20 6.79 16 27 H 0.13 1.69 6.31 -52.49 -0.33 1.36 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -30.20 297.68 -8.48 -38.68 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.34 Total: 10.46 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -4.29 Total: -6.18 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 1.35 Total: -44.85 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.71 Total: 12.95 kcal Atomic # 35 Polarization: 0.24 SS G_CDS: -2.05 Total: -1.81 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.20 -8.48 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126671030.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.411 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds