Wall clock time and date at job start Tue Mar 31 2020 19:12:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31371 * 1
3 3 Si 1.86805 * 120.00116 * 2 1
4 4 H 1.48504 * 109.46793 * 270.00209 * 3 2 1
5 5 H 1.48503 * 109.46997 * 30.00023 * 3 2 1
6 6 H 1.48500 * 109.47073 * 150.00469 * 3 2 1
7 7 C 1.39040 * 119.99790 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00149 * 0.02562 * 7 2 1
9 9 N 1.36856 * 120.00047 * 179.97438 * 7 2 1
10 10 C 1.34776 * 120.00214 * 180.02562 * 9 7 2
11 11 O 1.21685 * 119.99736 * 359.97438 * 10 9 7
12 12 C 1.46953 * 120.00089 * 180.02562 * 10 9 7
13 13 N 1.36815 * 126.79783 * 359.97165 * 12 10 9
14 14 H 0.96997 * 125.06652 * 359.74300 * 13 12 10
15 15 N 1.28415 * 109.87000 * 179.97438 * 13 12 10
16 16 C 1.31631 * 110.86413 * 0.02562 * 15 13 12
17 17 C 1.48435 * 126.20101 * 179.97438 * 16 15 13
18 18 C 1.39315 * 120.11775 * 144.77077 * 17 16 15
19 19 C 1.38022 * 119.87902 * 179.71960 * 18 17 16
20 20 C 1.38316 * 120.12040 * 0.52926 * 19 18 17
21 21 C 1.38322 * 120.23691 * 359.76792 * 20 19 18
22 22 C 1.38024 * 120.11871 * 359.95314 * 21 20 19
23 23 C 1.38398 * 126.80196 * 179.97438 * 12 10 9
24 24 Br 1.89104 * 127.36759 * 359.97438 * 23 12 10
25 25 H 0.97001 * 119.99548 * 359.97438 * 1 2 3
26 26 H 0.96999 * 119.99815 * 359.97438 * 9 7 2
27 27 H 1.08001 * 120.06114 * 359.97438 * 18 17 16
28 28 H 1.08005 * 119.94267 * 180.27675 * 19 18 17
29 29 H 1.07997 * 119.88303 * 179.74332 * 20 19 18
30 30 H 1.08002 * 119.94000 * 179.97438 * 21 20 19
31 31 H 1.08004 * 120.05895 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3137 0.0000 0.0000
3 14 2.2478 1.6178 0.0000
4 1 2.4952 2.0464 -1.4001
5 1 1.4452 2.6527 0.7001
6 1 3.5454 1.4401 0.6999
7 6 2.0089 -1.2041 0.0005
8 1 1.4689 -2.1394 0.0005
9 7 3.3774 -1.2042 0.0000
10 6 4.0513 -2.3714 0.0000
11 8 3.4428 -3.4252 0.0010
12 6 5.5208 -2.3714 0.0000
13 7 6.3404 -1.2759 -0.0005
14 1 6.0385 -0.3541 -0.0046
15 7 7.5689 -1.6498 0.0002
16 6 7.6592 -2.9630 0.0007
17 6 8.9143 -3.7555 0.0010
18 6 8.9799 -4.9608 0.6966
19 6 10.1477 -5.6965 0.6888
20 6 11.2550 -5.2338 0.0012
21 6 11.1972 -4.0347 -0.6860
22 6 10.0327 -3.2938 -0.6896
23 6 6.3499 -3.4796 0.0005
24 35 5.8340 -5.2989 0.0020
25 1 -0.4849 0.8401 0.0004
26 1 3.8624 -0.3642 -0.0011
27 1 8.1173 -5.3208 1.2375
28 1 10.1982 -6.6332 1.2240
29 1 12.1680 -5.8105 0.0011
30 1 12.0649 -3.6777 -1.2210
31 1 9.9886 -2.3579 -1.2268
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000126671030.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:12:20
Heat of formation + Delta-G solvation = 70.730626 kcal
Electronic energy + Delta-G solvation = -19500.109514 eV
Core-core repulsion = 16215.505085 eV
Total energy + Delta-G solvation = -3284.604429 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 335.001 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-42.39195 -39.00814 -38.28110 -34.41138 -33.22108 -32.02237 -31.66390 -30.87240
-29.72933 -29.10788 -25.53858 -23.66934 -22.81487 -21.87220 -20.41886 -19.80277
-19.29056 -17.61771 -16.89477 -15.71399 -15.68569 -15.27195 -15.05809 -14.55628
-14.00268 -13.59139 -13.52286 -13.49311 -13.27196 -13.01785 -12.78899 -12.38351
-11.48304 -11.44693 -11.26993 -11.13408 -10.94483 -10.86110 -10.26440 -9.95295
-9.75847 -9.64979 -8.98153 -8.77956 -8.64720 -8.49311 -8.31443 -6.62408
-4.08288 1.02260 1.37431 1.42966 1.91159 2.57121 2.78036 2.87105
2.95584 2.98468 3.80562 3.82371 3.86734 4.04644 4.48471 4.82005
4.90857 5.01441 5.04165 5.09186 5.16290 5.40517 5.55950 5.62356
5.82670 5.99651 6.07758 6.43817 6.45836 6.50093 6.89884 6.91337
7.23995 7.79349 7.91568 8.26077 8.62152 9.05630 9.43870 10.48633
Molecular weight = 335.00amu
Principal moments of inertia in cm(-1)
A = 0.021783 B = 0.004019 C = 0.003433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.085381 B = 6965.901360 C = 8153.033918
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.857 5.857
2 C 0.047 3.953
3 Si 0.878 3.122
4 H -0.265 1.265
5 H -0.269 1.269
6 H -0.271 1.271
7 C -0.301 4.301
8 H 0.130 0.870
9 N -0.564 5.564
10 C 0.493 3.507
11 O -0.536 6.536
12 C 0.048 3.952
13 N -0.382 5.382
14 H 0.447 0.553
15 N -0.269 5.269
16 C 0.093 3.907
17 C -0.004 4.004
18 C -0.094 4.094
19 C -0.120 4.120
20 C -0.117 4.117
21 C -0.125 4.125
22 C -0.092 4.092
23 C -0.154 4.154
24 Br 0.014 6.986
25 H 0.280 0.720
26 H 0.365 0.635
27 H 0.131 0.869
28 H 0.125 0.875
29 H 0.121 0.879
30 H 0.123 0.877
31 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.511 -5.583 0.016 20.294
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.495 5.495
2 C -0.160 4.160
3 Si 0.704 3.296
4 H -0.190 1.190
5 H -0.194 1.194
6 H -0.197 1.197
7 C -0.429 4.429
8 H 0.147 0.853
9 N -0.202 5.202
10 C 0.278 3.722
11 O -0.415 6.415
12 C -0.084 4.084
13 N -0.097 5.097
14 H 0.293 0.707
15 N -0.101 5.101
16 C -0.067 4.067
17 C -0.006 4.006
18 C -0.114 4.114
19 C -0.138 4.138
20 C -0.135 4.135
21 C -0.143 4.143
22 C -0.111 4.111
23 C -0.245 4.245
24 Br 0.098 6.902
25 H 0.091 0.909
26 H 0.198 0.802
27 H 0.149 0.851
28 H 0.143 0.857
29 H 0.139 0.861
30 H 0.141 0.859
31 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 19.244 -5.854 0.016 20.115
hybrid contribution -0.037 1.788 0.000 1.788
sum 19.207 -4.066 0.016 19.633
Atomic orbital electron populations
1.69586 1.05734 1.28266 1.45916 1.25125 0.95599 0.98234 0.96997
0.86699 0.79802 0.83853 0.79278 1.19031 1.19408 1.19682 1.19531
0.78534 0.97229 1.47653 0.85296 1.42148 1.08036 1.05503 1.64506
1.16263 0.82649 0.85460 0.87786 1.90795 1.66296 1.29878 1.54555
1.22214 0.93940 0.86442 1.05799 1.43559 1.02891 1.09247 1.54045
0.70703 1.73319 1.01596 1.13990 1.21164 1.20135 0.91939 0.88946
1.05649 1.17671 0.90009 0.93889 0.99026 1.21377 0.98514 0.93495
0.98007 1.21046 0.92837 0.99941 0.99975 1.21207 0.98454 0.96358
0.97529 1.21047 0.97729 0.95332 1.00162 1.21181 0.92001 0.99627
0.98284 1.22088 0.92963 0.92562 1.16901 1.96577 1.92113 1.03834
1.97664 0.90936 0.80241 0.85096 0.85709 0.86123 0.85928 0.85660
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -23.26 13.95 55.50 0.77 -22.49 16
2 C 0.05 1.19 5.50 -17.45 -0.10 1.09 16
3 Si 0.88 17.66 27.74 -169.99 -4.71 12.95 16
4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16
5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
6 H -0.27 -4.84 6.52 56.52 0.37 -4.48 16
7 C -0.30 -7.91 10.16 -15.01 -0.15 -8.06 16
8 H 0.13 3.87 7.38 -52.49 -0.39 3.49 16
9 N -0.56 -12.65 5.08 -12.09 -0.06 -12.71 16
10 C 0.49 11.12 7.75 -12.73 -0.10 11.02 16
11 O -0.54 -13.82 15.10 5.20 0.08 -13.74 16
12 C 0.05 0.91 7.14 -82.06 -0.59 0.32 16
13 N -0.38 -6.00 6.84 33.47 0.23 -5.78 16
14 H 0.45 5.66 8.20 -190.47 -1.56 4.10 16
15 N -0.27 -4.28 12.14 33.41 0.41 -3.87 16
16 C 0.09 1.52 6.74 -82.80 -0.56 0.96 16
17 C 0.00 -0.06 5.83 -104.90 -0.61 -0.67 16
18 C -0.09 -1.20 8.93 -39.26 -0.35 -1.55 16
19 C -0.12 -1.23 10.03 -39.63 -0.40 -1.63 16
20 C -0.12 -1.09 10.04 -39.52 -0.40 -1.49 16
21 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16
22 C -0.09 -1.11 9.75 -39.26 -0.38 -1.50 16
23 C -0.15 -2.80 6.65 -38.57 -0.26 -3.05 16
24 Br 0.01 0.24 30.16 -68.01 -2.05 -1.81 16
25 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16
26 H 0.36 6.99 4.92 -40.82 -0.20 6.79 16
27 H 0.13 1.69 6.31 -52.49 -0.33 1.36 16
28 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16
29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16
30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16
31 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16
LS Contribution 297.68 15.07 4.49 4.49
Total: -1.00 -30.20 297.68 -8.48 -38.68
By element:
Atomic # 1 Polarization: 13.81 SS G_CDS: -3.34 Total: 10.46 kcal
Atomic # 6 Polarization: -1.89 SS G_CDS: -4.29 Total: -6.18 kcal
Atomic # 7 Polarization: -46.20 SS G_CDS: 1.35 Total: -44.85 kcal
Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal
Atomic # 14 Polarization: 17.66 SS G_CDS: -4.71 Total: 12.95 kcal
Atomic # 35 Polarization: 0.24 SS G_CDS: -2.05 Total: -1.81 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -30.20 -8.48 -38.68 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000126671030.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.411 kcal
(2) G-P(sol) polarization free energy of solvation -30.201 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.731 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds