Wall clock time and date at job start Tue Mar 31 2020 19:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48504 * 109.46793 * 270.00209 * 3 2 1 5 5 H 1.48503 * 109.46997 * 30.00023 * 3 2 1 6 6 H 1.48500 * 109.47073 * 150.00469 * 3 2 1 7 7 C 1.39040 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00149 * 0.02562 * 7 2 1 9 9 N 1.36856 * 120.00047 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00214 * 180.02562 * 9 7 2 11 11 O 1.21685 * 119.99736 * 359.97438 * 10 9 7 12 12 C 1.46953 * 120.00089 * 180.02562 * 10 9 7 13 13 N 1.36815 * 126.79783 * 359.97165 * 12 10 9 14 14 H 0.96997 * 125.06652 * 359.74300 * 13 12 10 15 15 N 1.28415 * 109.87000 * 179.97438 * 13 12 10 16 16 C 1.31631 * 110.86413 * 0.02562 * 15 13 12 17 17 C 1.48435 * 126.20101 * 179.97438 * 16 15 13 18 18 C 1.39315 * 120.11775 * 144.77077 * 17 16 15 19 19 C 1.38022 * 119.87902 * 179.71960 * 18 17 16 20 20 C 1.38316 * 120.12040 * 0.52926 * 19 18 17 21 21 C 1.38322 * 120.23691 * 359.76792 * 20 19 18 22 22 C 1.38024 * 120.11871 * 359.95314 * 21 20 19 23 23 C 1.38398 * 126.80196 * 179.97438 * 12 10 9 24 24 Br 1.89104 * 127.36759 * 359.97438 * 23 12 10 25 25 H 0.97001 * 119.99548 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99815 * 359.97438 * 9 7 2 27 27 H 1.08001 * 120.06114 * 359.97438 * 18 17 16 28 28 H 1.08005 * 119.94267 * 180.27675 * 19 18 17 29 29 H 1.07997 * 119.88303 * 179.74332 * 20 19 18 30 30 H 1.08002 * 119.94000 * 179.97438 * 21 20 19 31 31 H 1.08004 * 120.05895 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5454 1.4401 0.6999 7 6 2.0089 -1.2041 0.0005 8 1 1.4689 -2.1394 0.0005 9 7 3.3774 -1.2042 0.0000 10 6 4.0513 -2.3714 0.0000 11 8 3.4428 -3.4252 0.0010 12 6 5.5208 -2.3714 0.0000 13 7 6.3404 -1.2759 -0.0005 14 1 6.0385 -0.3541 -0.0046 15 7 7.5689 -1.6498 0.0002 16 6 7.6592 -2.9630 0.0007 17 6 8.9143 -3.7555 0.0010 18 6 8.9799 -4.9608 0.6966 19 6 10.1477 -5.6965 0.6888 20 6 11.2550 -5.2338 0.0012 21 6 11.1972 -4.0347 -0.6860 22 6 10.0327 -3.2938 -0.6896 23 6 6.3499 -3.4796 0.0005 24 35 5.8340 -5.2989 0.0020 25 1 -0.4849 0.8401 0.0004 26 1 3.8624 -0.3642 -0.0011 27 1 8.1173 -5.3208 1.2375 28 1 10.1982 -6.6332 1.2240 29 1 12.1680 -5.8105 0.0011 30 1 12.0649 -3.6777 -1.2210 31 1 9.9886 -2.3579 -1.2268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126671030.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:20 Heat of formation + Delta-G solvation = 50.593619 kcal Electronic energy + Delta-G solvation = -19500.982720 eV Core-core repulsion = 16215.505085 eV Total energy + Delta-G solvation = -3285.477635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.75346 -40.22649 -39.75986 -36.30837 -34.48352 -33.86347 -33.00752 -31.73462 -30.98095 -30.39811 -27.39332 -24.77285 -24.00568 -23.10179 -21.69068 -21.27279 -21.00427 -19.30445 -17.81792 -17.15592 -17.08479 -16.82385 -16.17819 -15.79982 -15.53014 -15.25617 -14.95478 -14.70385 -14.47767 -14.28256 -14.13021 -13.69159 -13.09888 -12.60285 -12.52556 -12.43922 -12.19102 -12.08057 -12.00193 -11.69037 -11.16346 -10.91603 -10.54438 -10.44698 -10.02313 -9.78392 -9.36100 -8.54618 -6.13518 -0.08286 0.07803 0.52284 0.55567 1.21062 1.30903 1.37093 1.38879 1.68995 2.09870 2.11986 2.40162 2.93438 3.07704 3.24772 3.58573 3.72711 4.11626 4.15997 4.17301 4.34082 4.57243 4.72274 4.73859 5.09405 5.19774 5.32646 5.55328 5.60514 5.65198 5.72905 5.81107 6.11112 6.36349 6.60106 6.66462 7.12253 7.61101 8.60887 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.004019 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.085381 B = 6965.901360 C = 8153.033918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.003 4.003 3 Si 0.952 3.048 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.231 1.231 7 C -0.328 4.328 8 H 0.071 0.929 9 N -0.561 5.561 10 C 0.503 3.497 11 O -0.574 6.574 12 C 0.025 3.975 13 N -0.361 5.361 14 H 0.462 0.538 15 N -0.255 5.255 16 C 0.096 3.904 17 C -0.035 4.035 18 C -0.108 4.108 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.100 4.100 23 C -0.159 4.159 24 Br 0.017 6.983 25 H 0.285 0.715 26 H 0.385 0.615 27 H 0.121 0.879 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.830 -4.534 -0.078 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.205 4.205 3 Si 0.771 3.229 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.155 1.155 7 C -0.457 4.457 8 H 0.089 0.911 9 N -0.201 5.201 10 C 0.289 3.711 11 O -0.455 6.455 12 C -0.107 4.107 13 N -0.079 5.079 14 H 0.311 0.689 15 N -0.088 5.088 16 C -0.063 4.063 17 C -0.037 4.037 18 C -0.128 4.128 19 C -0.139 4.139 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.251 4.251 24 Br 0.101 6.899 25 H 0.095 0.905 26 H 0.220 0.780 27 H 0.139 0.861 28 H 0.166 0.834 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 23.582 -4.793 -0.076 24.065 hybrid contribution -1.199 1.242 0.027 1.727 sum 22.383 -3.551 -0.048 22.663 Atomic orbital electron populations 1.69742 1.08057 1.29886 1.47326 1.26106 0.96467 1.02563 0.95374 0.85551 0.79803 0.77088 0.80412 1.17548 1.19272 1.15474 1.19058 0.80219 0.95834 1.50609 0.91104 1.41816 1.06617 1.06405 1.65234 1.16710 0.84050 0.84837 0.85463 1.90767 1.67926 1.31407 1.55429 1.21563 0.92153 0.88114 1.08912 1.43563 1.02307 1.09299 1.52704 0.68949 1.73352 1.01050 1.13956 1.20402 1.20511 0.92246 0.88952 1.04619 1.17782 0.89796 0.94711 1.01416 1.21422 0.99370 0.93612 0.98410 1.21366 0.92191 1.00471 0.99881 1.21644 0.99194 0.96057 0.95683 1.21410 0.97723 0.95124 0.99730 1.21311 0.92249 1.00140 0.98218 1.22415 0.93915 0.92752 1.15972 1.96567 1.92226 1.03543 1.97587 0.90480 0.78003 0.86134 0.83382 0.82777 0.83051 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.59 13.95 21.68 0.30 -51.29 16 2 C 0.00 -0.17 5.50 84.95 0.47 0.30 16 3 Si 0.95 35.35 27.74 68.60 1.90 37.26 16 4 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.23 -7.01 6.52 99.48 0.65 -6.36 16 7 C -0.33 -18.10 10.16 84.10 0.85 -17.25 16 8 H 0.07 4.64 7.38 -2.91 -0.02 4.62 16 9 N -0.56 -25.41 5.08 -310.40 -1.58 -26.99 16 10 C 0.50 23.16 7.75 86.53 0.67 23.83 16 11 O -0.57 -30.94 15.10 -4.30 -0.06 -31.00 16 12 C 0.03 0.94 7.14 40.69 0.29 1.23 16 13 N -0.36 -10.64 6.84 -48.03 -0.33 -10.97 16 14 H 0.46 10.35 8.20 -220.02 -1.80 8.54 16 15 N -0.26 -7.60 12.14 -48.20 -0.59 -8.18 16 16 C 0.10 3.00 6.74 42.51 0.29 3.29 16 17 C -0.04 -0.93 5.83 -20.04 -0.12 -1.05 16 18 C -0.11 -2.58 8.93 22.48 0.20 -2.38 16 19 C -0.12 -2.12 10.03 22.24 0.22 -1.90 16 20 C -0.11 -1.55 10.04 22.31 0.22 -1.33 16 21 C -0.12 -1.95 10.03 22.24 0.22 -1.73 16 22 C -0.10 -2.17 9.75 22.48 0.22 -1.95 16 23 C -0.16 -5.71 6.65 22.92 0.15 -5.56 16 24 Br 0.02 0.57 30.16 -20.37 -0.61 -0.04 16 25 H 0.29 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.38 14.10 4.92 -92.71 -0.46 13.64 16 27 H 0.12 3.04 6.31 -2.91 -0.02 3.02 16 28 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 29 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -70.19 297.68 1.63 -68.56 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -1.10 Total: 27.15 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 3.70 Total: -4.50 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -2.19 Total: -97.43 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.06 Total: -31.00 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 1.90 Total: 37.26 kcal Atomic # 35 Polarization: 0.57 SS G_CDS: -0.61 Total: -0.04 kcal Total: -70.19 1.63 -68.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126671030.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.156 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds