Wall clock time and date at job start Tue Mar 31 2020 19:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97699 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.98183 * 3 2 1 6 6 H 1.48504 * 109.47046 * 154.98220 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36492 * 126.06908 * 185.48980 * 9 7 2 11 11 C 1.35695 * 107.50910 * 179.97438 * 10 9 7 12 12 N 1.40525 * 126.08411 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99584 * 179.97438 * 12 11 10 14 14 O 1.21576 * 120.00174 * 0.02562 * 13 12 11 15 15 C 1.47826 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.39608 * 120.14095 * 359.72190 * 15 13 12 17 17 C 1.37941 * 119.87167 * 179.68135 * 16 15 13 18 18 C 1.38362 * 120.15590 * 0.62067 * 17 16 15 19 19 C 1.38420 * 120.28735 * 359.67755 * 18 17 16 20 20 Br 1.89103 * 119.94263 * 180.02562 * 19 18 17 21 21 C 1.38075 * 120.12445 * 0.02562 * 19 18 17 22 22 C 1.40668 * 107.82809 * 359.97438 * 11 10 9 23 23 N 1.30903 * 108.38608 * 359.73955 * 22 11 10 24 24 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 25 25 H 1.08007 * 126.24337 * 359.94118 * 10 9 7 26 26 H 0.96998 * 120.00318 * 0.02562 * 12 11 10 27 27 H 1.08001 * 120.06238 * 359.97438 * 16 15 13 28 28 H 1.08001 * 119.92334 * 180.29886 * 17 16 15 29 29 H 1.08007 * 119.86115 * 179.69874 * 18 17 16 30 30 H 1.08000 * 120.08216 * 180.02562 * 21 19 18 31 31 H 1.07997 * 125.80534 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8854 -3.6293 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0092 -5.9189 0.4667 13 6 -0.0868 -6.6993 0.5476 14 8 -1.1939 -6.1990 0.5025 15 6 0.0574 -8.1634 0.6912 16 6 1.3273 -8.7416 0.7376 17 6 1.4555 -10.1078 0.8783 18 6 0.3289 -10.9068 0.9607 19 6 -0.9334 -10.3411 0.9092 20 35 -2.4665 -11.4423 1.0235 21 6 -1.0753 -8.9743 0.7747 22 6 -0.3402 -3.8163 0.2653 23 7 -0.0657 -2.5420 0.1450 24 1 -0.4850 0.8400 0.0004 25 1 2.9416 -3.8544 0.2573 26 1 1.8925 -6.3180 0.5031 27 1 2.2077 -8.1198 0.6681 28 1 2.4376 -10.5554 0.9191 29 1 0.4348 -11.9765 1.0660 30 1 -2.0605 -8.5337 0.7350 31 1 -1.3290 -4.2482 0.3107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139765394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:13 Heat of formation + Delta-G solvation = 81.122999 kcal Electronic energy + Delta-G solvation = -19178.362217 eV Core-core repulsion = 15894.208436 eV Total energy + Delta-G solvation = -3284.153782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31271 -39.39436 -37.99890 -34.38169 -33.33259 -32.52857 -31.43399 -30.25452 -29.49806 -27.74992 -25.15546 -23.81863 -22.58820 -21.10356 -20.41792 -19.42928 -17.90191 -17.42558 -16.12958 -15.76504 -15.49349 -14.99518 -14.74149 -14.73798 -14.03573 -13.87131 -13.46920 -13.37809 -13.02361 -12.93437 -12.00028 -11.70624 -11.52303 -11.42013 -11.29364 -11.10735 -10.98307 -10.55002 -10.54385 -10.22923 -9.35563 -9.27564 -9.19325 -9.01510 -8.84256 -8.09262 -6.74359 -6.59075 -4.25622 0.57299 0.90991 1.34606 2.75388 2.97236 3.03540 3.09239 3.46456 3.48194 3.81159 3.84516 4.42237 4.49691 4.53804 4.72938 4.81968 4.98670 4.99708 5.08655 5.32107 5.56472 5.86893 5.96331 6.01443 6.20694 6.36387 6.47334 6.85600 6.92070 7.06312 7.19805 7.82652 8.10255 8.22965 8.57697 8.77169 9.34325 9.63231 10.37084 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.042048 B = 0.002226 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.738326 B =12576.977240 C =13228.614841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.082 4.082 11 C -0.063 4.063 12 N -0.613 5.613 13 C 0.538 3.462 14 O -0.529 6.529 15 C -0.109 4.109 16 C -0.077 4.077 17 C -0.120 4.120 18 C -0.076 4.076 19 C -0.098 4.098 20 Br -0.048 7.048 21 C -0.036 4.036 22 C -0.030 4.030 23 N -0.261 5.261 24 H 0.275 0.725 25 H 0.146 0.854 26 H 0.396 0.604 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.148 0.852 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -22.185 2.151 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.092 4.908 10 C -0.234 4.234 11 C -0.168 4.168 12 N -0.255 5.255 13 C 0.324 3.676 14 O -0.407 6.407 15 C -0.114 4.114 16 C -0.096 4.096 17 C -0.138 4.138 18 C -0.096 4.096 19 C -0.178 4.178 20 Br 0.037 6.963 21 C -0.057 4.057 22 C -0.205 4.205 23 N -0.092 5.092 24 H 0.086 0.914 25 H 0.164 0.836 26 H 0.230 0.770 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.527 -20.872 2.046 20.979 hybrid contribution 1.677 -0.178 0.066 1.688 sum 2.204 -21.050 2.112 21.270 Atomic orbital electron populations 1.70219 1.06179 1.28070 1.34940 1.25656 0.95694 1.00319 0.95439 0.85815 0.79506 0.80002 0.78857 1.19641 1.20011 1.18731 1.19884 0.92147 0.80666 1.52852 0.86557 1.44565 1.04039 1.03695 1.38529 1.21253 0.96799 0.85767 1.19547 1.17243 0.94443 0.81345 1.23797 1.42377 1.08018 1.05320 1.69802 1.17910 0.84776 0.85445 0.79467 1.90686 1.25309 1.74262 1.50409 1.20086 0.93625 0.93870 1.03784 1.21523 0.96672 0.95468 0.95984 1.21103 0.98722 0.93286 1.00736 1.21270 0.90673 1.00581 0.97090 1.21713 0.92666 0.94214 1.09191 1.96733 1.36135 1.65990 1.97420 1.21257 1.00000 0.90775 0.93620 1.24139 0.98028 0.90867 1.07481 1.78265 0.90234 1.15042 1.25636 0.91403 0.83622 0.76969 0.84821 0.84486 0.84725 0.83471 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.35 11.83 55.50 0.66 -20.69 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 18.73 29.56 -169.99 -5.02 13.71 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 7 C -0.32 -8.47 10.24 -14.82 -0.15 -8.62 16 8 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 9 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 10 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 12 N -0.61 -10.78 5.41 -10.86 -0.06 -10.83 16 13 C 0.54 9.55 7.74 -12.34 -0.10 9.46 16 14 O -0.53 -11.43 13.49 5.30 0.07 -11.36 16 15 C -0.11 -1.47 5.87 -104.97 -0.62 -2.09 16 16 C -0.08 -0.77 9.54 -39.18 -0.37 -1.14 16 17 C -0.12 -0.97 10.03 -39.64 -0.40 -1.36 16 18 C -0.08 -0.66 9.78 -39.47 -0.39 -1.05 16 19 C -0.10 -1.06 6.22 -39.57 -0.25 -1.31 16 20 Br -0.05 -0.48 33.69 -68.01 -2.29 -2.77 16 21 C -0.04 -0.46 9.33 -39.15 -0.37 -0.83 16 22 C -0.03 -0.78 10.85 -17.03 -0.18 -0.96 16 23 N -0.26 -7.57 10.41 30.80 0.32 -7.25 16 24 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.15 2.77 8.06 -52.48 -0.42 2.35 16 26 H 0.40 5.22 6.86 -40.82 -0.28 4.94 16 27 H 0.13 1.02 6.40 -52.49 -0.34 0.68 16 28 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 29 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.15 2.04 7.65 -52.49 -0.40 1.63 16 31 H 0.18 4.59 5.91 -52.49 -0.31 4.28 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -32.93 300.10 -7.67 -40.60 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.14 Total: 8.89 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.68 Total: -10.93 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.88 Total: -42.66 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.93 -7.67 -40.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139765394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.719 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds