Wall clock time and date at job start Tue Mar 31 2020 19:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97699 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.98183 * 3 2 1 6 6 H 1.48504 * 109.47046 * 154.98220 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36492 * 126.06908 * 185.48980 * 9 7 2 11 11 C 1.35695 * 107.50910 * 179.97438 * 10 9 7 12 12 N 1.40525 * 126.08411 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99584 * 179.97438 * 12 11 10 14 14 O 1.21576 * 120.00174 * 0.02562 * 13 12 11 15 15 C 1.47826 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.39608 * 120.14095 * 359.72190 * 15 13 12 17 17 C 1.37941 * 119.87167 * 179.68135 * 16 15 13 18 18 C 1.38362 * 120.15590 * 0.62067 * 17 16 15 19 19 C 1.38420 * 120.28735 * 359.67755 * 18 17 16 20 20 Br 1.89103 * 119.94263 * 180.02562 * 19 18 17 21 21 C 1.38075 * 120.12445 * 0.02562 * 19 18 17 22 22 C 1.40668 * 107.82809 * 359.97438 * 11 10 9 23 23 N 1.30903 * 108.38608 * 359.73955 * 22 11 10 24 24 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 25 25 H 1.08007 * 126.24337 * 359.94118 * 10 9 7 26 26 H 0.96998 * 120.00318 * 0.02562 * 12 11 10 27 27 H 1.08001 * 120.06238 * 359.97438 * 16 15 13 28 28 H 1.08001 * 119.92334 * 180.29886 * 17 16 15 29 29 H 1.08007 * 119.86115 * 179.69874 * 18 17 16 30 30 H 1.08000 * 120.08216 * 180.02562 * 21 19 18 31 31 H 1.07997 * 125.80534 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8854 -3.6293 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0092 -5.9189 0.4667 13 6 -0.0868 -6.6993 0.5476 14 8 -1.1939 -6.1990 0.5025 15 6 0.0574 -8.1634 0.6912 16 6 1.3273 -8.7416 0.7376 17 6 1.4555 -10.1078 0.8783 18 6 0.3289 -10.9068 0.9607 19 6 -0.9334 -10.3411 0.9092 20 35 -2.4665 -11.4423 1.0235 21 6 -1.0753 -8.9743 0.7747 22 6 -0.3402 -3.8163 0.2653 23 7 -0.0657 -2.5420 0.1450 24 1 -0.4850 0.8400 0.0004 25 1 2.9416 -3.8544 0.2573 26 1 1.8925 -6.3180 0.5031 27 1 2.2077 -8.1198 0.6681 28 1 2.4376 -10.5554 0.9191 29 1 0.4348 -11.9765 1.0660 30 1 -2.0605 -8.5337 0.7350 31 1 -1.3290 -4.2482 0.3107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139765394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:12 Heat of formation + Delta-G solvation = 59.618765 kcal Electronic energy + Delta-G solvation = -19179.294711 eV Core-core repulsion = 15894.208436 eV Total energy + Delta-G solvation = -3285.086275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.84589 -40.84571 -39.26427 -36.03894 -35.08392 -33.46042 -32.46152 -32.08909 -30.43280 -29.44602 -26.94264 -25.06006 -23.40248 -22.90078 -21.87347 -21.17784 -19.38176 -18.86929 -17.43487 -17.11640 -17.08291 -16.22019 -16.20395 -15.82413 -15.57562 -15.15094 -14.92183 -14.71765 -14.45355 -14.14040 -13.49973 -13.32737 -12.94515 -12.88320 -12.75614 -12.26280 -12.07643 -11.95925 -11.85020 -11.35235 -11.03994 -10.89559 -10.79215 -10.15668 -10.09274 -9.82445 -8.55196 -8.47758 -6.24787 -0.32188 0.08664 0.54129 1.25674 1.40593 1.57815 1.60403 1.86971 2.00567 2.24564 2.40027 2.78825 2.88791 3.08559 3.64516 3.78644 3.98312 4.07948 4.27031 4.40673 4.48384 4.60969 4.80243 4.99003 5.01160 5.11369 5.19410 5.22082 5.28590 5.40921 5.67229 5.95383 6.29097 6.66742 6.72535 7.29627 7.45953 7.66275 8.51923 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.042048 B = 0.002226 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.738326 B =12576.977240 C =13228.614841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.007 4.007 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.242 1.242 7 C -0.353 4.353 8 H 0.144 0.856 9 N -0.167 5.167 10 C -0.076 4.076 11 C -0.048 4.048 12 N -0.604 5.604 13 C 0.538 3.462 14 O -0.577 6.577 15 C -0.132 4.132 16 C -0.067 4.067 17 C -0.105 4.105 18 C -0.062 4.062 19 C -0.108 4.108 20 Br -0.045 7.045 21 C -0.053 4.053 22 C -0.060 4.060 23 N -0.311 5.311 24 H 0.276 0.724 25 H 0.193 0.807 26 H 0.420 0.580 27 H 0.161 0.839 28 H 0.182 0.818 29 H 0.165 0.835 30 H 0.123 0.877 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -24.402 2.434 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.165 1.165 7 C -0.484 4.484 8 H 0.161 0.839 9 N 0.064 4.936 10 C -0.226 4.226 11 C -0.154 4.154 12 N -0.249 5.249 13 C 0.327 3.673 14 O -0.457 6.457 15 C -0.137 4.137 16 C -0.086 4.086 17 C -0.123 4.123 18 C -0.082 4.082 19 C -0.188 4.188 20 Br 0.040 6.960 21 C -0.074 4.074 22 C -0.235 4.235 23 N -0.143 5.143 24 H 0.086 0.914 25 H 0.210 0.790 26 H 0.259 0.741 27 H 0.178 0.822 28 H 0.199 0.801 29 H 0.183 0.817 30 H 0.141 0.859 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.358 -23.157 2.331 23.679 hybrid contribution 0.479 0.222 -0.007 0.528 sum 4.837 -22.935 2.325 23.555 Atomic orbital electron populations 1.70406 1.08531 1.29137 1.37182 1.26914 0.96439 1.04449 0.94101 0.84575 0.78532 0.74073 0.78998 1.18970 1.20339 1.16467 1.20650 0.93473 0.80928 1.53370 0.83911 1.44866 1.03553 1.05277 1.39881 1.22023 0.98853 0.84400 1.17337 1.17307 0.92928 0.83776 1.21369 1.42248 1.09541 1.03125 1.70003 1.18695 0.83875 0.87363 0.77406 1.90664 1.27269 1.75658 1.52146 1.19724 0.95637 0.90770 1.07527 1.21833 0.95630 0.96870 0.94264 1.21588 1.00376 0.92134 0.98236 1.21739 0.89729 1.02287 0.94472 1.21812 0.93987 0.93302 1.09683 1.96736 1.36539 1.65278 1.97422 1.21139 0.99081 0.92052 0.95135 1.24165 0.99057 0.91160 1.09112 1.78159 0.92299 1.16460 1.27425 0.91400 0.79003 0.74092 0.82180 0.80077 0.81735 0.85890 0.81792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.85 11.83 21.66 0.26 -47.60 16 2 C -0.01 -0.38 5.50 84.95 0.47 0.08 16 3 Si 1.02 38.32 29.56 68.60 2.03 40.35 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.28 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.24 -8.15 7.11 99.48 0.71 -7.45 16 7 C -0.35 -18.53 10.24 84.01 0.86 -17.67 16 8 H 0.14 6.41 7.84 -2.91 -0.02 6.39 16 9 N -0.17 -9.24 3.74 -190.00 -0.71 -9.95 16 10 C -0.08 -3.44 11.49 83.38 0.96 -2.48 16 11 C -0.05 -2.18 6.90 37.75 0.26 -1.92 16 12 N -0.60 -20.63 5.41 -306.53 -1.66 -22.29 16 13 C 0.54 19.34 7.74 86.78 0.67 20.01 16 14 O -0.58 -26.44 13.49 -3.95 -0.05 -26.49 16 15 C -0.13 -3.43 5.87 -20.09 -0.12 -3.55 16 16 C -0.07 -1.08 9.54 22.53 0.21 -0.86 16 17 C -0.11 -1.14 10.03 22.23 0.22 -0.92 16 18 C -0.06 -0.83 9.78 22.34 0.22 -0.62 16 19 C -0.11 -2.16 6.22 22.27 0.14 -2.02 16 20 Br -0.05 -0.85 33.69 -20.37 -0.69 -1.54 16 21 C -0.05 -1.38 9.33 22.55 0.21 -1.17 16 22 C -0.06 -3.31 10.85 85.42 0.93 -2.39 16 23 N -0.31 -18.99 10.41 -56.46 -0.59 -19.57 16 24 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.19 6.63 8.06 -2.91 -0.02 6.61 16 26 H 0.42 9.84 6.86 -92.71 -0.64 9.20 16 27 H 0.16 1.64 6.40 -2.91 -0.02 1.63 16 28 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 29 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.12 3.70 7.65 -2.91 -0.02 3.67 16 31 H 0.17 9.30 5.91 -2.91 -0.02 9.28 16 Total: -1.00 -78.40 300.10 4.18 -74.21 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.56 Total: 26.39 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 5.03 Total: -13.50 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -2.70 Total: -99.42 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -0.69 Total: -1.54 kcal Total: -78.40 4.18 -74.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139765394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.833 kcal (2) G-P(sol) polarization free energy of solvation -78.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds