Wall clock time and date at job start Tue Mar 31 2020 19:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48503 * 109.46872 * 274.98986 * 3 2 1 5 5 H 1.48509 * 109.46740 * 34.98606 * 3 2 1 6 6 H 1.48496 * 109.47479 * 154.98656 * 3 2 1 7 7 C 1.40132 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00828 * 173.65040 * 7 2 1 9 9 C 1.41789 * 119.99641 * 353.37030 * 7 2 1 10 10 O 1.21782 * 120.00079 * 6.17175 * 9 7 2 11 11 N 1.34777 * 120.00023 * 186.16992 * 9 7 2 12 12 C 1.40089 * 120.00047 * 179.97438 * 11 9 7 13 13 C 1.40493 * 126.13111 * 359.69481 * 12 11 9 14 14 N 1.30788 * 108.34846 * 179.81504 * 13 12 11 15 15 N 1.40051 * 108.48089 * 0.44012 * 14 13 12 16 16 C 1.40151 * 126.02533 * 179.68544 * 15 14 13 17 17 C 1.38853 * 120.06774 * 179.77289 * 16 15 14 18 18 C 1.38103 * 119.93917 * 179.70111 * 17 16 15 19 19 C 1.38302 * 120.08628 * 0.56624 * 18 17 16 20 20 C 1.38249 * 120.14884 * 359.72575 * 19 18 17 21 21 C 1.38223 * 120.05229 * 359.97438 * 20 19 18 22 22 Br 1.89097 * 120.04137 * 179.97438 * 21 20 19 23 23 C 1.35939 * 107.94317 * 359.71689 * 15 14 13 24 24 H 0.97004 * 120.00230 * 359.97438 * 1 2 3 25 25 H 0.97007 * 119.99786 * 0.02562 * 11 9 7 26 26 H 1.07996 * 125.82031 * 359.97438 * 13 12 11 27 27 H 1.08007 * 120.03264 * 359.97438 * 17 16 15 28 28 H 1.08006 * 119.95569 * 180.29313 * 18 17 16 29 29 H 1.08010 * 119.92918 * 179.75161 * 19 18 17 30 30 H 1.08002 * 119.97493 * 180.02562 * 20 19 18 31 31 H 1.08003 * 126.26070 * 179.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3823 2.1072 -1.3948 5 1 1.4943 2.6199 0.8028 6 1 3.5866 1.4121 0.5920 7 6 2.0070 -1.2135 -0.0005 8 1 3.0820 -1.2165 -0.1040 9 6 1.3051 -2.4374 0.1407 10 8 0.0874 -2.4435 0.1495 11 7 1.9857 -3.5940 0.2652 12 6 1.2923 -4.8032 0.4052 13 6 -0.1036 -4.9586 0.4386 14 7 -0.3731 -6.2309 0.5765 15 7 0.8352 -6.9355 0.6468 16 6 0.9734 -8.3216 0.8014 17 6 2.2377 -8.8935 0.8516 18 6 2.3708 -10.2589 1.0102 19 6 1.2465 -11.0584 1.1073 20 6 -0.0141 -10.4936 1.0518 21 6 -0.1542 -9.1270 0.8994 22 35 -1.8786 -8.3548 0.8227 23 6 1.8504 -6.0378 0.5393 24 1 -0.4851 0.8401 0.0004 25 1 2.9557 -3.5891 0.2585 26 1 -0.8301 -4.1633 0.3607 27 1 3.1163 -8.2705 0.7710 28 1 3.3542 -10.7034 1.0540 29 1 1.3535 -12.1265 1.2273 30 1 -0.8902 -11.1206 1.1284 31 1 2.9066 -6.2627 0.5574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154026498.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:32 Heat of formation + Delta-G solvation = 68.068700 kcal Electronic energy + Delta-G solvation = -19508.063614 eV Core-core repulsion = 16223.343755 eV Total energy + Delta-G solvation = -3284.719858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.45273 -40.18526 -39.28024 -35.50468 -34.50142 -34.01764 -33.32112 -30.72805 -30.45425 -29.55805 -28.08384 -24.36510 -23.97686 -22.74874 -21.88713 -20.91852 -19.29207 -18.91238 -17.49831 -17.18569 -16.64349 -16.39442 -16.35613 -15.66982 -15.45103 -14.90340 -14.74538 -14.49620 -14.46534 -13.96771 -13.71632 -13.16759 -12.89790 -12.81905 -12.64101 -12.38905 -12.13760 -12.00099 -11.83997 -11.70145 -11.00013 -10.86711 -10.15671 -9.86706 -9.79325 -9.45301 -8.36105 -8.34260 -6.94262 -0.25210 0.12955 0.74757 1.18038 1.40879 1.42027 1.45759 1.59773 1.81505 2.23948 2.52135 2.66046 3.01318 3.50969 3.71351 3.87047 3.91247 4.11158 4.27489 4.31902 4.43933 4.61767 4.71238 4.80772 5.09540 5.23846 5.26170 5.39690 5.48756 5.71991 5.91711 6.14235 6.22464 6.39319 6.65838 6.78353 7.48900 8.43250 8.61390 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.003165 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.118709 B = 8845.734095 C = 9898.101022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.032 3.968 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.564 4.564 8 H 0.093 0.907 9 C 0.533 3.467 10 O -0.616 6.616 11 N -0.667 5.667 12 C 0.039 3.961 13 C 0.026 3.974 14 N -0.272 5.272 15 N -0.334 5.334 16 C 0.171 3.829 17 C -0.146 4.146 18 C -0.066 4.066 19 C -0.124 4.124 20 C -0.073 4.073 21 C -0.138 4.138 22 Br -0.038 7.038 23 C -0.016 4.016 24 H 0.278 0.722 25 H 0.409 0.591 26 H 0.178 0.822 27 H 0.157 0.843 28 H 0.177 0.823 29 H 0.173 0.827 30 H 0.153 0.847 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -22.452 2.599 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.599 4.599 8 H 0.111 0.889 9 C 0.342 3.658 10 O -0.503 6.503 11 N -0.312 5.312 12 C -0.067 4.067 13 C -0.162 4.162 14 N -0.092 5.092 15 N -0.113 5.113 16 C 0.075 3.925 17 C -0.168 4.168 18 C -0.084 4.084 19 C -0.143 4.143 20 C -0.093 4.093 21 C -0.220 4.220 22 Br 0.048 6.952 23 C -0.159 4.159 24 H 0.088 0.912 25 H 0.244 0.756 26 H 0.195 0.805 27 H 0.174 0.826 28 H 0.194 0.806 29 H 0.190 0.810 30 H 0.170 0.830 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.507 -22.855 2.662 23.447 hybrid contribution 1.065 1.683 -0.146 1.997 sum 5.572 -21.172 2.516 22.038 Atomic orbital electron populations 1.70165 1.09715 1.29403 1.33719 1.27004 0.95443 1.05121 0.91007 0.84963 0.79039 0.74816 0.79251 1.18668 1.19873 1.16868 1.20522 0.96091 0.90578 1.52742 0.88890 1.17399 0.87141 0.83519 0.77747 1.90489 1.15644 1.86387 1.57789 1.43039 1.09353 1.03162 1.75629 1.18295 0.91908 0.87856 1.08631 1.24806 0.96662 0.94314 1.00453 1.78290 1.03519 1.04016 1.23412 1.45605 1.04509 1.04483 1.56742 1.17855 0.95358 0.78261 1.01008 1.21239 0.93890 0.97465 1.04171 1.21580 1.01304 0.91145 0.94405 1.21653 0.90562 1.02322 0.99780 1.21332 1.00647 0.90538 0.96750 1.21831 0.90655 0.96430 1.13085 1.96749 1.16995 1.84184 1.97262 1.22211 0.95829 0.86534 1.11356 0.91187 0.75578 0.80513 0.82576 0.80576 0.81005 0.82970 0.76532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.55 11.76 21.85 0.26 -47.29 16 2 C 0.03 1.74 5.49 85.33 0.47 2.21 16 3 Si 1.00 39.18 29.56 68.60 2.03 41.21 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 7 C -0.56 -30.68 9.31 23.61 0.22 -30.46 16 8 H 0.09 4.44 7.86 -2.91 -0.02 4.42 16 9 C 0.53 30.28 7.53 85.12 0.64 30.93 16 10 O -0.62 -39.95 12.04 -4.61 -0.06 -40.01 16 11 N -0.67 -30.22 5.44 -311.97 -1.70 -31.92 16 12 C 0.04 1.69 6.90 37.89 0.26 1.95 16 13 C 0.03 1.27 10.84 85.40 0.93 2.19 16 14 N -0.27 -11.66 8.76 -56.64 -0.50 -12.15 16 15 N -0.33 -11.80 3.82 -186.58 -0.71 -12.51 16 16 C 0.17 4.81 6.69 38.12 0.25 5.06 16 17 C -0.15 -2.71 9.46 22.39 0.21 -2.50 16 18 C -0.07 -0.77 10.04 22.25 0.22 -0.55 16 19 C -0.12 -1.47 10.04 22.29 0.22 -1.25 16 20 C -0.07 -1.33 9.78 22.27 0.22 -1.11 16 21 C -0.14 -3.73 6.24 22.43 0.14 -3.59 16 22 Br -0.04 -1.22 30.21 -20.37 -0.62 -1.83 16 23 C -0.02 -0.54 10.87 83.57 0.91 0.37 16 24 H 0.28 14.89 8.29 -92.71 -0.77 14.12 16 25 H 0.41 15.05 8.78 -92.70 -0.81 14.23 16 26 H 0.18 9.88 5.90 -2.91 -0.02 9.86 16 27 H 0.16 2.19 6.75 -2.91 -0.02 2.17 16 28 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 29 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.22 4.79 7.06 -2.91 -0.02 4.77 16 Total: -1.00 -78.94 294.91 3.79 -75.14 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.39 Total: 26.11 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.70 Total: 3.24 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -2.65 Total: -103.88 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.06 Total: -40.01 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Atomic # 35 Polarization: -1.22 SS G_CDS: -0.62 Total: -1.83 kcal Total: -78.94 3.79 -75.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154026498.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.213 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds