Wall clock time and date at job start Tue Mar 31 2020 18:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38795 * 120.01533 * 0.02562 * 3 2 1 5 5 C 1.38267 * 120.08053 * 179.97438 * 4 3 2 6 6 Br 1.89104 * 119.94249 * 179.97438 * 5 4 3 7 7 C 1.38244 * 120.10830 * 0.02562 * 5 4 3 8 8 C 1.38914 * 120.02765 * 0.02562 * 7 5 4 9 9 N 1.39667 * 120.04273 * 179.97438 * 8 7 5 10 10 S 1.65602 * 119.99678 * 44.99597 * 9 8 7 11 11 O 1.42100 * 106.39909 * 178.54246 * 10 9 8 12 12 O 1.42098 * 106.40407 * 311.46070 * 10 9 8 13 13 C 1.76195 * 107.21835 * 65.00203 * 10 9 8 14 14 H 1.08004 * 120.00455 * 359.97438 * 13 10 9 15 15 C 1.37884 * 120.00063 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99708 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99954 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47347 * 90.00034 * 17 15 13 19 19 H 1.48499 * 109.46922 * 209.99984 * 17 15 13 20 20 H 1.48500 * 109.47059 * 329.99702 * 17 15 13 21 21 C 1.38581 * 120.00660 * 179.72117 * 3 2 1 22 22 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08005 * 119.95708 * 359.95486 * 4 3 2 26 26 H 1.08007 * 119.98282 * 179.97438 * 7 5 4 27 27 H 0.96994 * 120.00323 * 224.99768 * 9 8 7 28 28 H 0.97004 * 119.99782 * 179.97438 * 16 15 13 29 29 H 1.07995 * 120.05500 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2902 2.3751 0.0005 5 6 1.9165 3.6079 0.0011 6 35 0.8830 5.1915 0.0011 7 6 3.2968 3.6845 0.0005 8 6 4.0575 2.5222 -0.0011 9 7 5.4521 2.5992 -0.0022 10 16 6.2236 3.6567 1.0122 11 8 7.6165 3.4728 0.7993 12 8 5.5723 4.9100 0.8562 13 6 5.8983 3.1288 2.6614 14 1 5.2886 2.2552 2.8385 15 6 6.4222 3.8311 3.7261 16 7 7.1652 4.8947 3.5105 17 14 6.0779 3.2711 5.4745 18 1 7.1317 2.3176 5.9055 19 1 6.0752 4.4482 6.3798 20 1 4.7532 2.6023 5.5283 21 6 3.4298 1.2838 0.0058 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2117 2.3180 0.0002 26 1 3.7838 4.6485 0.0005 27 1 5.9686 2.0334 -0.5970 28 1 7.5334 5.3890 4.2595 29 1 4.0190 0.3787 0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169177208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:31 Heat of formation + Delta-G solvation = -98.245323 kcal Electronic energy + Delta-G solvation = -18878.472469 eV Core-core repulsion = 15553.858799 eV Total energy + Delta-G solvation = -3324.613670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 334.966 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10591 -37.84706 -35.41451 -34.40313 -34.16797 -33.14969 -31.58861 -29.32256 -28.59338 -27.12292 -26.21097 -22.27430 -21.90955 -19.23803 -18.33158 -17.54321 -16.58675 -16.23141 -15.88253 -15.75708 -15.54960 -14.91605 -14.16578 -13.75912 -13.70994 -13.44583 -12.96586 -12.41628 -12.09962 -11.99038 -11.52817 -11.36772 -11.25519 -11.21813 -10.90962 -10.64295 -10.54344 -10.43785 -10.14741 -10.07764 -9.72100 -9.30305 -8.95018 -8.24772 -7.95989 -6.77669 -5.40672 1.22489 1.50524 1.74953 2.09571 3.04766 3.11105 3.17836 3.24480 3.75914 4.00868 4.42917 4.58380 4.92392 5.01868 5.05826 5.25681 5.31785 5.40242 5.48887 5.55832 5.82855 5.96180 6.25164 6.34045 6.37735 6.82414 6.86595 7.25804 7.34838 7.64848 7.89348 8.81790 10.16801 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.005247 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.819926 B = 5335.515588 C = 5894.701182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.205 4.205 5 C -0.029 4.029 6 Br -0.049 7.049 7 C -0.154 4.154 8 C 0.224 3.776 9 N -1.071 6.071 10 S 2.701 3.299 11 O -0.994 6.994 12 O -0.990 6.990 13 C -1.014 5.014 14 H 0.105 0.895 15 C 0.135 3.865 16 N -0.843 5.843 17 Si 0.922 3.078 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.261 1.261 21 C -0.162 4.162 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.135 0.865 26 H 0.175 0.825 27 H 0.416 0.584 28 H 0.292 0.708 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.593 -5.640 -6.709 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.098 3.902 4 C -0.227 4.227 5 C -0.109 4.109 6 Br 0.036 6.964 7 C -0.177 4.177 8 C 0.125 3.875 9 N -0.814 5.814 10 S 2.803 3.197 11 O -0.984 6.984 12 O -0.980 6.980 13 C -1.148 5.148 14 H 0.123 0.877 15 C -0.084 4.084 16 N -0.473 5.473 17 Si 0.745 3.255 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.185 1.185 21 C -0.185 4.185 22 H 0.117 0.883 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.192 0.808 27 H 0.250 0.750 28 H 0.103 0.897 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.275 -4.200 -6.856 16.383 hybrid contribution -0.194 -1.195 1.157 1.675 sum -14.469 -5.395 -5.699 16.460 Atomic orbital electron populations 1.23060 0.78498 1.03785 1.01539 1.86073 1.21283 1.26460 1.88901 1.18505 0.91577 0.83736 0.96409 1.20995 1.00086 0.90676 1.10898 1.21187 0.93880 0.91193 1.04667 1.96663 1.69711 1.32414 1.97606 1.21976 0.92007 1.00959 1.02708 1.16900 0.83340 0.91987 0.95288 1.54137 1.10770 1.60574 1.55962 1.01054 0.71941 0.71983 0.74723 1.93403 1.31896 1.85765 1.87324 1.93317 1.75884 1.41316 1.87495 1.30386 1.46027 1.24839 1.13588 0.87705 1.24726 0.90069 0.91936 1.01634 1.69881 1.27025 1.14853 1.35497 0.86129 0.79937 0.79117 0.80267 1.19088 1.19830 1.18524 1.20443 0.91609 0.98038 1.08421 0.88322 0.92491 0.92611 0.84743 0.80800 0.75006 0.89708 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 15 2 O -0.31 -4.06 10.49 -19.44 -0.20 -4.26 15 3 C 0.14 2.14 6.68 -39.25 -0.26 1.88 15 4 C -0.20 -2.95 8.77 -39.36 -0.35 -3.29 15 5 C -0.03 -0.48 6.22 -39.57 -0.25 -0.73 15 6 Br -0.05 -0.73 33.70 -68.01 -2.29 -3.02 15 7 C -0.15 -2.96 8.92 -39.33 -0.35 -3.31 15 8 C 0.22 4.17 6.21 -83.81 -0.52 3.65 15 9 N -1.07 -20.90 5.77 32.40 0.19 -20.71 15 10 S 2.70 69.21 4.95 -107.50 -0.53 68.68 15 11 O -0.99 -28.06 18.02 -57.17 -1.03 -29.09 15 12 O -0.99 -27.19 14.94 -57.17 -0.85 -28.05 15 13 C -1.01 -27.44 9.68 30.60 0.30 -27.14 15 14 H 0.10 2.64 7.81 -52.48 -0.41 2.23 15 15 C 0.13 3.70 5.46 -17.82 -0.10 3.60 15 16 N -0.84 -24.22 13.19 55.43 0.73 -23.49 15 17 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 15 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 15 21 C -0.16 -2.61 9.91 -39.23 -0.39 -3.00 15 22 H 0.10 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.06 0.46 7.66 -51.93 -0.40 0.06 15 24 H 0.06 0.42 7.66 -51.93 -0.40 0.02 15 25 H 0.13 1.55 6.29 -52.48 -0.33 1.22 15 26 H 0.17 3.73 5.58 -52.48 -0.29 3.44 15 27 H 0.42 6.64 8.95 -34.47 -0.31 6.33 15 28 H 0.29 7.55 8.31 -40.82 -0.34 7.21 15 29 H 0.14 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -33.24 292.02 -7.65 -40.89 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -2.12 Total: 6.33 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -0.92 Total: -27.12 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.92 Total: -44.20 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -2.09 Total: -61.39 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 69.21 SS G_CDS: -0.53 Total: 68.68 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.24 -7.65 -40.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169177208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.351 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds