Wall clock time and date at job start Tue Mar 31 2020 18:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38795 * 120.01533 * 0.02562 * 3 2 1 5 5 C 1.38267 * 120.08053 * 179.97438 * 4 3 2 6 6 Br 1.89104 * 119.94249 * 179.97438 * 5 4 3 7 7 C 1.38244 * 120.10830 * 0.02562 * 5 4 3 8 8 C 1.38914 * 120.02765 * 0.02562 * 7 5 4 9 9 N 1.39667 * 120.04273 * 179.97438 * 8 7 5 10 10 S 1.65602 * 119.99678 * 44.99597 * 9 8 7 11 11 O 1.42100 * 106.39909 * 178.54246 * 10 9 8 12 12 O 1.42098 * 106.40407 * 311.46070 * 10 9 8 13 13 C 1.76195 * 107.21835 * 65.00203 * 10 9 8 14 14 H 1.08004 * 120.00455 * 359.97438 * 13 10 9 15 15 C 1.37884 * 120.00063 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99708 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99954 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47347 * 90.00034 * 17 15 13 19 19 H 1.48499 * 109.46922 * 209.99984 * 17 15 13 20 20 H 1.48500 * 109.47059 * 329.99702 * 17 15 13 21 21 C 1.38581 * 120.00660 * 179.72117 * 3 2 1 22 22 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08005 * 119.95708 * 359.95486 * 4 3 2 26 26 H 1.08007 * 119.98282 * 179.97438 * 7 5 4 27 27 H 0.96994 * 120.00323 * 224.99768 * 9 8 7 28 28 H 0.97004 * 119.99782 * 179.97438 * 16 15 13 29 29 H 1.07995 * 120.05500 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2902 2.3751 0.0005 5 6 1.9165 3.6079 0.0011 6 35 0.8830 5.1915 0.0011 7 6 3.2968 3.6845 0.0005 8 6 4.0575 2.5222 -0.0011 9 7 5.4521 2.5992 -0.0022 10 16 6.2236 3.6567 1.0122 11 8 7.6165 3.4728 0.7993 12 8 5.5723 4.9100 0.8562 13 6 5.8983 3.1288 2.6614 14 1 5.2886 2.2552 2.8385 15 6 6.4222 3.8311 3.7261 16 7 7.1652 4.8947 3.5105 17 14 6.0779 3.2711 5.4745 18 1 7.1317 2.3176 5.9055 19 1 6.0752 4.4482 6.3798 20 1 4.7532 2.6023 5.5283 21 6 3.4298 1.2838 0.0058 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2117 2.3180 0.0002 26 1 3.7838 4.6485 0.0005 27 1 5.9686 2.0334 -0.5970 28 1 7.5334 5.3890 4.2595 29 1 4.0190 0.3787 0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169177208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:31 Heat of formation + Delta-G solvation = -123.574989 kcal Electronic energy + Delta-G solvation = -18879.570846 eV Core-core repulsion = 15553.858799 eV Total energy + Delta-G solvation = -3325.712047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 334.966 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26985 -39.04438 -37.49434 -36.28089 -35.83507 -35.18304 -32.82256 -30.51827 -29.91420 -28.30130 -27.97969 -23.52781 -23.22048 -21.16566 -19.80318 -19.12028 -18.48110 -17.48546 -17.27697 -17.05717 -16.75945 -16.59688 -15.94516 -15.65121 -14.94536 -14.69941 -14.20000 -14.02888 -13.65383 -13.37829 -13.12947 -13.03245 -12.83656 -12.62557 -12.46590 -12.33855 -12.32129 -12.07172 -11.79394 -11.32907 -11.26715 -11.15343 -10.84218 -9.55169 -9.26524 -8.78850 -7.52745 -0.13570 0.10085 0.34713 0.52695 1.33048 1.33625 1.49841 2.15468 2.27582 2.47042 2.55422 2.75726 3.56087 3.85426 3.90829 4.09550 4.16469 4.33066 4.41186 4.46469 4.53418 4.68653 4.81574 5.00135 5.10284 5.23188 5.34158 5.51912 5.85207 6.17008 6.33441 6.74687 8.17423 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.005247 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.819926 B = 5335.515588 C = 5894.701182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.154 3.846 4 C -0.189 4.189 5 C -0.037 4.037 6 Br -0.036 7.036 7 C -0.184 4.184 8 C 0.201 3.799 9 N -1.058 6.058 10 S 2.712 3.288 11 O -1.030 7.030 12 O -1.019 7.019 13 C -1.035 5.035 14 H 0.117 0.883 15 C 0.076 3.924 16 N -0.889 5.889 17 Si 0.987 3.013 18 H -0.252 1.252 19 H -0.261 1.261 20 H -0.251 1.251 21 C -0.161 4.161 22 H 0.126 0.874 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.168 0.832 26 H 0.144 0.856 27 H 0.430 0.570 28 H 0.301 0.699 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 -7.699 -5.963 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.233 6.233 3 C 0.106 3.894 4 C -0.211 4.211 5 C -0.117 4.117 6 Br 0.050 6.950 7 C -0.207 4.207 8 C 0.102 3.898 9 N -0.807 5.807 10 S 2.814 3.186 11 O -1.020 7.020 12 O -1.008 7.008 13 C -1.169 5.169 14 H 0.135 0.865 15 C -0.138 4.138 16 N -0.520 5.520 17 Si 0.805 3.195 18 H -0.176 1.176 19 H -0.185 1.185 20 H -0.174 1.174 21 C -0.184 4.184 22 H 0.144 0.856 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.186 0.814 26 H 0.162 0.838 27 H 0.268 0.732 28 H 0.111 0.889 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.729 -6.267 -6.138 18.889 hybrid contribution 0.386 -0.630 0.814 1.099 sum -16.343 -6.897 -5.324 18.520 Atomic orbital electron populations 1.23477 0.75927 1.06112 1.02663 1.86089 1.23843 1.25100 1.88265 1.18528 0.91250 0.84716 0.94900 1.21325 1.01708 0.89485 1.08554 1.21328 0.93129 0.92766 1.04516 1.96661 1.68713 1.32091 1.97563 1.21812 0.93488 1.00016 1.05376 1.17010 0.82342 0.92979 0.97432 1.53361 1.11670 1.60123 1.55499 1.00394 0.71191 0.72074 0.74898 1.93343 1.34324 1.86482 1.87899 1.93289 1.76142 1.43483 1.87914 1.30746 1.46198 1.25354 1.14597 0.86453 1.25929 0.89476 0.91767 1.06639 1.69963 1.28363 1.16317 1.37316 0.85174 0.80487 0.79381 0.74484 1.17606 1.18457 1.17414 1.20571 0.92691 0.97479 1.07661 0.85630 0.91632 0.91115 0.81442 0.83793 0.73220 0.88916 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 15 2 O -0.32 -7.08 10.49 -92.48 -0.97 -8.05 15 3 C 0.15 4.13 6.68 22.49 0.15 4.28 15 4 C -0.19 -4.92 8.77 22.41 0.20 -4.73 15 5 C -0.04 -1.19 6.22 22.28 0.14 -1.05 15 6 Br -0.04 -1.02 33.70 -20.37 -0.69 -1.71 15 7 C -0.18 -7.18 8.92 22.43 0.20 -6.98 15 8 C 0.20 7.46 6.21 38.20 0.24 7.69 15 9 N -1.06 -42.05 5.77 -51.41 -0.30 -42.35 15 10 S 2.71 143.47 4.95 -56.49 -0.28 143.19 15 11 O -1.03 -60.27 18.02 -128.00 -2.31 -62.58 15 12 O -1.02 -58.50 14.94 -128.00 -1.91 -60.42 15 13 C -1.04 -56.57 9.68 67.74 0.66 -55.92 15 14 H 0.12 5.89 7.81 -2.91 -0.02 5.86 15 15 C 0.08 4.16 5.46 84.66 0.46 4.62 15 16 N -0.89 -52.12 13.19 21.45 0.28 -51.84 15 17 Si 0.99 41.06 29.54 68.60 2.03 43.09 15 18 H -0.25 -9.85 7.11 99.48 0.71 -9.14 15 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 20 H -0.25 -9.90 7.11 99.48 0.71 -9.19 15 21 C -0.16 -4.93 9.91 22.50 0.22 -4.70 15 22 H 0.13 0.97 8.14 -2.39 -0.02 0.95 15 23 H 0.07 0.76 7.66 -2.39 -0.02 0.74 15 24 H 0.07 0.73 7.66 -2.39 -0.02 0.71 15 25 H 0.17 3.16 6.29 -2.91 -0.02 3.14 15 26 H 0.14 6.50 5.58 -2.91 -0.02 6.49 15 27 H 0.43 13.97 8.95 -96.75 -0.87 13.10 15 28 H 0.30 15.81 8.31 -92.70 -0.77 15.04 15 29 H 0.16 4.13 8.06 -2.91 -0.02 4.11 15 Total: -1.00 -73.42 292.02 -0.42 -73.84 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.35 Total: 22.33 kcal Atomic # 6 Polarization: -58.89 SS G_CDS: 3.38 Total: -55.52 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -0.01 Total: -94.18 kcal Atomic # 8 Polarization: -125.85 SS G_CDS: -5.19 Total: -131.04 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 143.47 SS G_CDS: -0.28 Total: 143.19 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.69 Total: -1.71 kcal Total: -73.42 -0.42 -73.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169177208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.737 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds