Wall clock time and date at job start Tue Mar 31 2020 18:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00298 * 2 1 4 4 C 1.53002 * 109.47467 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47125 * 64.99901 * 4 3 2 6 6 C 1.46500 * 119.99889 * 270.00207 * 5 4 3 7 7 C 1.39001 * 120.00151 * 90.00306 * 5 4 3 8 8 C 1.39138 * 119.70788 * 185.01985 * 7 5 4 9 9 C 1.38298 * 119.09851 * 179.69991 * 8 7 5 10 10 C 1.38886 * 118.50271 * 0.54142 * 9 8 7 11 11 C 1.50697 * 120.33233 * 179.73033 * 10 9 8 12 12 N 1.46899 * 109.47440 * 269.72537 * 11 10 9 13 13 C 1.46895 * 110.99989 * 170.00357 * 12 11 10 14 14 C 1.53241 * 109.33538 * 187.25118 * 13 12 11 15 15 N 1.47082 * 108.52509 * 306.16899 * 14 13 12 16 16 C 1.36935 * 120.87800 * 231.18634 * 15 14 13 17 17 H 1.07994 * 120.00243 * 27.12925 * 16 15 14 18 18 C 1.38815 * 119.99552 * 206.84012 * 16 15 14 19 19 N 1.31614 * 119.99986 * 17.18837 * 18 16 15 20 20 Si 1.86797 * 120.00057 * 197.17547 * 18 16 15 21 21 H 1.48508 * 109.47149 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47196 * 120.00464 * 20 18 16 23 23 H 1.48497 * 109.47565 * 240.00842 * 20 18 16 24 24 C 1.47072 * 118.23374 * 51.45730 * 15 14 13 25 25 C 1.46908 * 110.99894 * 294.30445 * 12 11 10 26 26 C 1.38019 * 119.32793 * 359.45761 * 10 9 8 27 27 N 1.31969 * 120.86058 * 0.27929 * 26 10 9 28 28 H 1.09001 * 109.47391 * 59.99717 * 1 2 3 29 29 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46968 * 300.00053 * 1 2 3 31 31 H 1.08999 * 109.47295 * 60.00267 * 3 2 1 32 32 H 1.08998 * 109.47335 * 300.00432 * 3 2 1 33 33 H 1.08998 * 109.46719 * 304.99649 * 4 3 2 34 34 H 1.08995 * 109.47457 * 185.00217 * 4 3 2 35 35 H 1.09002 * 109.47057 * 269.99862 * 6 5 4 36 36 H 1.09006 * 109.47389 * 30.00126 * 6 5 4 37 37 H 1.09004 * 109.47105 * 150.00067 * 6 5 4 38 38 H 1.08004 * 120.45210 * 0.02562 * 8 7 5 39 39 H 1.08001 * 120.74925 * 180.29782 * 9 8 7 40 40 H 1.09007 * 109.46575 * 149.72520 * 11 10 9 41 41 H 1.09005 * 109.47461 * 29.72591 * 11 10 9 42 42 H 1.08994 * 109.49506 * 67.29451 * 13 12 11 43 43 H 1.08994 * 109.51398 * 307.22151 * 13 12 11 44 44 H 1.09003 * 109.62622 * 186.45689 * 14 13 12 45 45 H 1.09001 * 109.79122 * 65.97420 * 14 13 12 46 46 H 0.97002 * 120.00194 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.62781 * 68.25550 * 24 15 14 48 48 H 1.09007 * 109.62956 * 188.83247 * 24 15 14 49 49 H 1.09005 * 109.49135 * 292.70628 * 25 12 11 50 50 H 1.09006 * 109.49151 * 52.78388 * 25 12 11 51 51 H 1.08001 * 119.57199 * 180.29171 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3427 7 6 4.2705 1.3577 -2.3553 8 6 4.5865 0.7590 -3.5709 9 6 4.8716 1.5605 -4.6613 10 6 4.8423 2.9392 -4.4962 11 6 5.1522 3.8512 -5.6552 12 7 6.5924 4.1397 -5.6798 13 6 6.9704 4.8267 -6.9219 14 6 8.4966 4.9470 -6.9909 15 7 8.9710 5.5894 -5.7557 16 6 9.8091 6.6712 -5.8034 17 1 9.7942 7.3285 -6.6602 18 6 10.6736 6.9264 -4.7478 19 7 10.9416 5.9801 -3.8731 20 14 11.4570 8.6127 -4.5687 21 1 10.9962 9.4924 -5.6730 22 1 11.0621 9.2062 -3.2661 23 1 12.9350 8.4805 -4.6247 24 6 8.5261 5.0351 -4.4681 25 6 6.9943 4.9150 -4.4985 26 6 4.5209 3.4655 -3.2615 27 7 4.2478 2.6765 -2.2395 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8410 34 1 3.9786 2.1764 0.0890 35 1 5.1147 -1.1856 -1.0549 36 1 3.3851 -1.3631 -0.6733 37 1 3.9119 -1.2115 -2.3668 38 1 4.6036 -0.3169 -3.6630 39 1 5.1155 1.1241 -5.6186 40 1 4.5969 4.7825 -5.5432 41 1 4.8630 3.3656 -6.5872 42 1 6.5261 5.8219 -6.9369 43 1 6.6116 4.2552 -7.7779 44 1 8.7774 5.5550 -7.8510 45 1 8.9412 3.9560 -7.0823 46 1 11.5454 6.1585 -3.1352 47 1 8.9708 4.0510 -4.3199 48 1 8.8265 5.7013 -3.6593 49 1 6.5495 5.9090 -4.5472 50 1 6.6525 4.4070 -3.5966 51 1 4.4923 4.5371 -3.1299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191306081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:36 Heat of formation + Delta-G solvation = 43.543663 kcal Electronic energy + Delta-G solvation = -29167.951960 eV Core-core repulsion = 25296.938177 eV Total energy + Delta-G solvation = -3871.013783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.34378 -38.47830 -37.89035 -36.37033 -34.45202 -32.48972 -31.79543 -30.75328 -29.86528 -29.63967 -27.52908 -26.82111 -25.72749 -24.29537 -23.73442 -22.58554 -22.38934 -21.79415 -20.56762 -19.02528 -17.66641 -16.86918 -16.68641 -16.44336 -16.12667 -15.47731 -15.28657 -15.13948 -14.64895 -14.50865 -14.38812 -14.18137 -14.07001 -13.41379 -13.28191 -13.18860 -12.91129 -12.85582 -12.79311 -12.60427 -12.28216 -12.20234 -11.96649 -11.73878 -11.42940 -11.36820 -11.22939 -10.98436 -10.72175 -10.42450 -10.27203 -10.03076 -9.99353 -9.84116 -9.70173 -9.59257 -9.44478 -9.23556 -8.46382 -7.76802 -7.41598 -6.61141 -5.73490 -3.14729 1.42305 1.59783 2.88049 3.39693 3.47334 3.49552 3.51225 3.97649 4.52851 4.53752 4.66780 4.82341 4.83038 4.96699 5.02351 5.04666 5.10480 5.14222 5.18533 5.28096 5.30386 5.33490 5.41159 5.43676 5.50545 5.51696 5.54649 5.71016 5.73039 5.82298 5.93556 5.98750 6.03137 6.14292 6.20820 6.32146 6.39355 6.54918 6.60242 6.69533 6.77120 6.84114 6.93159 6.98833 7.31417 7.41126 7.67787 7.72445 7.77610 7.88013 8.25204 8.48302 9.25884 9.89636 10.48578 11.35070 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002375 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.014641 B =11787.573457 C =12516.816489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.045 3.955 4 C 0.134 3.866 5 N -0.609 5.609 6 C 0.100 3.900 7 C 0.396 3.604 8 C -0.240 4.240 9 C -0.014 4.014 10 C -0.177 4.177 11 C 0.104 3.896 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.149 3.851 15 N -0.596 5.596 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.180 3.820 25 C 0.034 3.966 26 C 0.155 3.845 27 N -0.544 5.544 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.024 0.976 46 H 0.253 0.747 47 H 0.024 0.976 48 H 0.087 0.913 49 H 0.024 0.976 50 H 0.062 0.938 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.698 -12.950 4.873 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.323 5.323 6 C -0.043 4.043 7 C 0.162 3.838 8 C -0.264 4.264 9 C -0.040 4.040 10 C -0.182 4.182 11 C -0.025 4.025 12 N -0.253 5.253 13 C -0.084 4.084 14 C 0.022 3.978 15 N -0.319 5.319 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.054 3.946 25 C -0.095 4.095 26 C -0.003 4.003 27 N -0.261 5.261 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.105 0.895 49 H 0.042 0.958 50 H 0.080 0.920 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.443 -13.282 5.960 25.097 hybrid contribution -0.006 1.452 -0.619 1.578 sum -20.448 -11.831 5.341 24.220 Atomic orbital electron populations 1.22697 0.81416 1.02459 0.99813 1.87853 1.19399 1.28230 1.95414 1.23110 0.95096 0.84635 1.00468 1.21390 0.91305 1.00437 0.85847 1.46119 1.71629 1.04878 1.09718 1.21676 1.01081 0.78787 1.02761 1.18312 0.90978 0.88127 0.86378 1.21372 1.11485 1.00737 0.92821 1.21153 0.92070 0.92641 0.98160 1.20437 1.06137 0.94727 0.96912 1.20833 0.89899 0.96213 0.95535 1.62007 1.12666 1.47433 1.03235 1.22611 0.99367 0.95586 0.90834 1.20970 0.90181 0.96180 0.90478 1.44158 1.54183 1.33696 0.99869 1.19227 1.13150 1.00633 1.04940 0.91652 1.25031 0.97331 0.97750 0.99740 1.70045 1.37506 1.30618 1.16573 0.86241 0.78751 0.84282 0.77613 1.20332 1.21608 1.21761 1.20924 0.86494 0.97737 0.89432 1.23020 1.00923 0.93916 0.91624 1.22256 0.91972 0.98806 0.87249 1.67118 1.22238 1.03347 1.33374 0.94317 0.89849 0.94270 0.92755 0.92946 0.90480 0.87938 0.93442 0.90436 0.91522 0.85354 0.85156 0.94810 0.90794 0.95458 0.92090 0.92710 0.95761 0.93714 0.95738 0.89508 0.95801 0.91995 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.74 9.53 -35.23 -0.34 -4.08 16 3 C 0.04 0.42 6.28 37.16 0.23 0.65 16 4 C 0.13 1.34 5.88 -4.04 -0.02 1.32 16 5 N -0.61 -6.93 2.95 -181.72 -0.54 -7.47 16 6 C 0.10 0.89 10.10 59.85 0.60 1.49 16 7 C 0.40 5.37 7.37 -155.02 -1.14 4.23 16 8 C -0.24 -3.04 9.27 -39.23 -0.36 -3.40 16 9 C -0.01 -0.18 9.85 -39.32 -0.39 -0.57 16 10 C -0.18 -2.52 4.90 -104.46 -0.51 -3.03 16 11 C 0.10 1.50 5.14 -4.98 -0.03 1.47 16 12 N -0.53 -9.55 4.62 -235.46 -1.09 -10.64 16 13 C 0.05 0.82 5.62 -3.70 -0.02 0.80 16 14 C 0.15 3.22 6.69 -3.60 -0.02 3.20 16 15 N -0.60 -15.45 3.03 -171.74 -0.52 -15.97 16 16 C -0.25 -7.00 9.63 -15.06 -0.15 -7.15 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 18 C 0.00 -0.01 4.93 -17.43 -0.09 -0.09 16 19 N -0.90 -26.81 11.16 55.49 0.62 -26.19 16 20 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.18 4.51 5.45 -3.37 -0.02 4.49 16 25 C 0.03 0.69 5.36 -3.46 -0.02 0.67 16 26 C 0.15 2.24 9.03 -17.57 -0.16 2.09 16 27 N -0.54 -7.98 9.08 -12.44 -0.11 -8.09 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.10 1.12 7.30 -51.93 -0.38 0.74 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.64 7.12 -51.93 -0.37 0.27 16 37 H 0.07 0.54 5.98 -51.93 -0.31 0.23 16 38 H 0.13 1.34 6.03 -52.48 -0.32 1.02 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.03 0.48 8.07 -51.93 -0.42 0.06 16 41 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 44 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 1.19 5.66 -51.93 -0.29 0.90 16 51 H 0.15 2.02 7.93 -52.49 -0.42 1.60 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -32.34 399.59 -10.64 -42.98 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.68 Total: -1.06 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.98 Total: 7.50 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -1.64 Total: -68.36 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.34 Total: -4.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.34 -10.64 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191306081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.521 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds