Wall clock time and date at job start Tue Mar 31 2020 18:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00298 * 2 1 4 4 C 1.53002 * 109.47467 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47125 * 64.99901 * 4 3 2 6 6 C 1.46500 * 119.99889 * 270.00207 * 5 4 3 7 7 C 1.39001 * 120.00151 * 90.00306 * 5 4 3 8 8 C 1.39138 * 119.70788 * 185.01985 * 7 5 4 9 9 C 1.38298 * 119.09851 * 179.69991 * 8 7 5 10 10 C 1.38886 * 118.50271 * 0.54142 * 9 8 7 11 11 C 1.50697 * 120.33233 * 179.73033 * 10 9 8 12 12 N 1.46899 * 109.47440 * 269.72537 * 11 10 9 13 13 C 1.46895 * 110.99989 * 170.00357 * 12 11 10 14 14 C 1.53241 * 109.33538 * 187.25118 * 13 12 11 15 15 N 1.47082 * 108.52509 * 306.16899 * 14 13 12 16 16 C 1.36935 * 120.87800 * 231.18634 * 15 14 13 17 17 H 1.07994 * 120.00243 * 27.12925 * 16 15 14 18 18 C 1.38815 * 119.99552 * 206.84012 * 16 15 14 19 19 N 1.31614 * 119.99986 * 17.18837 * 18 16 15 20 20 Si 1.86797 * 120.00057 * 197.17547 * 18 16 15 21 21 H 1.48508 * 109.47149 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47196 * 120.00464 * 20 18 16 23 23 H 1.48497 * 109.47565 * 240.00842 * 20 18 16 24 24 C 1.47072 * 118.23374 * 51.45730 * 15 14 13 25 25 C 1.46908 * 110.99894 * 294.30445 * 12 11 10 26 26 C 1.38019 * 119.32793 * 359.45761 * 10 9 8 27 27 N 1.31969 * 120.86058 * 0.27929 * 26 10 9 28 28 H 1.09001 * 109.47391 * 59.99717 * 1 2 3 29 29 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46968 * 300.00053 * 1 2 3 31 31 H 1.08999 * 109.47295 * 60.00267 * 3 2 1 32 32 H 1.08998 * 109.47335 * 300.00432 * 3 2 1 33 33 H 1.08998 * 109.46719 * 304.99649 * 4 3 2 34 34 H 1.08995 * 109.47457 * 185.00217 * 4 3 2 35 35 H 1.09002 * 109.47057 * 269.99862 * 6 5 4 36 36 H 1.09006 * 109.47389 * 30.00126 * 6 5 4 37 37 H 1.09004 * 109.47105 * 150.00067 * 6 5 4 38 38 H 1.08004 * 120.45210 * 0.02562 * 8 7 5 39 39 H 1.08001 * 120.74925 * 180.29782 * 9 8 7 40 40 H 1.09007 * 109.46575 * 149.72520 * 11 10 9 41 41 H 1.09005 * 109.47461 * 29.72591 * 11 10 9 42 42 H 1.08994 * 109.49506 * 67.29451 * 13 12 11 43 43 H 1.08994 * 109.51398 * 307.22151 * 13 12 11 44 44 H 1.09003 * 109.62622 * 186.45689 * 14 13 12 45 45 H 1.09001 * 109.79122 * 65.97420 * 14 13 12 46 46 H 0.97002 * 120.00194 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.62781 * 68.25550 * 24 15 14 48 48 H 1.09007 * 109.62956 * 188.83247 * 24 15 14 49 49 H 1.09005 * 109.49135 * 292.70628 * 25 12 11 50 50 H 1.09006 * 109.49151 * 52.78388 * 25 12 11 51 51 H 1.08001 * 119.57199 * 180.29171 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3427 7 6 4.2705 1.3577 -2.3553 8 6 4.5865 0.7590 -3.5709 9 6 4.8716 1.5605 -4.6613 10 6 4.8423 2.9392 -4.4962 11 6 5.1522 3.8512 -5.6552 12 7 6.5924 4.1397 -5.6798 13 6 6.9704 4.8267 -6.9219 14 6 8.4966 4.9470 -6.9909 15 7 8.9710 5.5894 -5.7557 16 6 9.8091 6.6712 -5.8034 17 1 9.7942 7.3285 -6.6602 18 6 10.6736 6.9264 -4.7478 19 7 10.9416 5.9801 -3.8731 20 14 11.4570 8.6127 -4.5687 21 1 10.9962 9.4924 -5.6730 22 1 11.0621 9.2062 -3.2661 23 1 12.9350 8.4805 -4.6247 24 6 8.5261 5.0351 -4.4681 25 6 6.9943 4.9150 -4.4985 26 6 4.5209 3.4655 -3.2615 27 7 4.2478 2.6765 -2.2395 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8410 34 1 3.9786 2.1764 0.0890 35 1 5.1147 -1.1856 -1.0549 36 1 3.3851 -1.3631 -0.6733 37 1 3.9119 -1.2115 -2.3668 38 1 4.6036 -0.3169 -3.6630 39 1 5.1155 1.1241 -5.6186 40 1 4.5969 4.7825 -5.5432 41 1 4.8630 3.3656 -6.5872 42 1 6.5261 5.8219 -6.9369 43 1 6.6116 4.2552 -7.7779 44 1 8.7774 5.5550 -7.8510 45 1 8.9412 3.9560 -7.0823 46 1 11.5454 6.1585 -3.1352 47 1 8.9708 4.0510 -4.3199 48 1 8.8265 5.7013 -3.6593 49 1 6.5495 5.9090 -4.5472 50 1 6.6525 4.4070 -3.5966 51 1 4.4923 4.5371 -3.1299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191306081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:35 Heat of formation + Delta-G solvation = 23.385677 kcal Electronic energy + Delta-G solvation = -29168.826076 eV Core-core repulsion = 25296.938177 eV Total energy + Delta-G solvation = -3871.887898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.35509 -39.66116 -38.97797 -37.35089 -36.10907 -33.81008 -33.14898 -32.04883 -31.58615 -30.64432 -28.84223 -27.67164 -26.86674 -25.60769 -24.84043 -24.17927 -23.84732 -22.91468 -21.58649 -20.78972 -18.72097 -18.52062 -17.73879 -17.18487 -17.05881 -16.86387 -16.40295 -16.29504 -16.11836 -15.66195 -15.54848 -15.31684 -15.26704 -15.06132 -14.83376 -14.80091 -14.21349 -13.94825 -13.84813 -13.45477 -13.22548 -13.13557 -13.05760 -12.95700 -12.80500 -12.67021 -12.62626 -12.38525 -12.25315 -12.02993 -12.02145 -11.87192 -11.59439 -11.41560 -10.79431 -10.63798 -10.59697 -10.54455 -10.26086 -9.21338 -8.68191 -8.36552 -7.87163 -5.32328 0.39431 0.57866 1.45417 1.46802 1.57838 2.04177 2.50668 2.82205 2.90135 3.26637 3.33295 3.59884 3.70807 3.94883 4.03791 4.10262 4.14627 4.25211 4.29391 4.35991 4.38446 4.39468 4.46466 4.48985 4.52783 4.55116 4.62904 4.65656 4.70326 4.73318 4.74719 4.82765 4.83431 4.92833 4.93301 4.98658 5.01482 5.07311 5.16891 5.23111 5.38295 5.53117 5.61659 5.67357 5.72370 6.07658 6.16922 6.23121 6.32744 6.38312 6.48610 7.12969 7.24771 7.84379 8.39059 9.19556 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002375 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.014641 B =11787.573457 C =12516.816489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.053 3.947 4 C 0.131 3.869 5 N -0.612 5.612 6 C 0.098 3.902 7 C 0.383 3.617 8 C -0.243 4.243 9 C -0.017 4.017 10 C -0.191 4.191 11 C 0.110 3.890 12 N -0.538 5.538 13 C 0.056 3.944 14 C 0.143 3.857 15 N -0.614 5.614 16 C -0.261 4.261 17 H 0.070 0.930 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.292 1.292 24 C 0.189 3.811 25 C 0.056 3.944 26 C 0.142 3.858 27 N -0.563 5.563 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.026 0.974 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.014 0.986 46 H 0.249 0.751 47 H -0.009 1.009 48 H 0.053 0.947 49 H 0.020 0.980 50 H 0.069 0.931 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.430 -13.681 4.054 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.025 4.025 4 C 0.008 3.992 5 N -0.325 5.325 6 C -0.044 4.044 7 C 0.149 3.851 8 C -0.267 4.267 9 C -0.043 4.043 10 C -0.196 4.196 11 C -0.017 4.017 12 N -0.263 5.263 13 C -0.073 4.073 14 C 0.017 3.983 15 N -0.338 5.338 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.250 4.250 19 N -0.584 5.584 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.219 1.219 24 C 0.063 3.937 25 C -0.073 4.073 26 C -0.016 4.016 27 N -0.281 5.281 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.058 0.942 41 H 0.118 0.882 42 H 0.044 0.956 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.009 0.991 48 H 0.071 0.929 49 H 0.039 0.961 50 H 0.087 0.913 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.214 -14.036 5.123 26.771 hybrid contribution 0.487 1.557 -0.349 1.669 sum -21.727 -12.478 4.775 25.506 Atomic orbital electron populations 1.22854 0.80084 1.03623 1.00233 1.87819 1.20874 1.28135 1.95492 1.22964 0.94508 0.84697 1.00284 1.21444 0.91872 1.00038 0.85895 1.46383 1.70930 1.05721 1.09476 1.21803 1.01643 0.77354 1.03585 1.18651 0.90899 0.88104 0.87479 1.21646 1.10818 1.01936 0.92333 1.21427 0.91416 0.92295 0.99145 1.20461 1.07118 0.95329 0.96680 1.20860 0.87147 0.96791 0.96901 1.61929 1.15576 1.46601 1.02175 1.22471 0.96260 0.96379 0.92150 1.21159 0.92878 0.95274 0.88981 1.44443 1.54238 1.33798 1.01357 1.19583 1.13062 1.01415 1.05006 0.91261 1.25838 0.98344 1.01180 0.99670 1.70212 1.38467 1.32571 1.17165 0.85182 0.77428 0.80066 0.77626 1.18900 1.21724 1.21902 1.20637 0.89685 0.94838 0.88519 1.22587 0.97011 0.94315 0.93385 1.22364 0.92472 0.99045 0.87673 1.67111 1.23109 1.04139 1.33697 0.94575 0.88367 0.93167 0.91198 0.94823 0.89013 0.89304 0.92903 0.89664 0.90635 0.83152 0.83235 0.94158 0.88237 0.95613 0.88219 0.91986 0.96783 0.94170 0.99101 0.92908 0.96142 0.91313 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -7.17 9.53 -148.98 -1.42 -8.58 16 3 C 0.05 0.95 6.28 71.98 0.45 1.40 16 4 C 0.13 2.54 5.88 86.38 0.51 3.05 16 5 N -0.61 -13.30 2.95 -728.84 -2.15 -15.45 16 6 C 0.10 1.57 10.10 127.77 1.29 2.86 16 7 C 0.38 10.09 7.37 133.06 0.98 11.07 16 8 C -0.24 -5.74 9.27 22.50 0.21 -5.53 16 9 C -0.02 -0.41 9.85 22.44 0.22 -0.18 16 10 C -0.19 -5.14 4.90 -19.76 -0.10 -5.23 16 11 C 0.11 2.91 5.14 85.56 0.44 3.35 16 12 N -0.54 -18.56 4.62 -898.87 -4.15 -22.71 16 13 C 0.06 1.90 5.62 86.38 0.49 2.39 16 14 C 0.14 6.09 6.69 86.35 0.58 6.67 16 15 N -0.61 -32.32 3.03 -697.26 -2.11 -34.43 16 16 C -0.26 -14.76 9.63 84.03 0.81 -13.95 16 17 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 18 C -0.06 -3.19 4.93 84.86 0.42 -2.77 16 19 N -0.94 -57.58 11.16 21.65 0.24 -57.34 16 20 Si 0.97 45.96 29.59 68.60 2.03 47.99 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 C 0.19 9.81 5.45 86.50 0.47 10.28 16 25 C 0.06 2.29 5.36 86.53 0.46 2.75 16 26 C 0.14 4.06 9.03 84.62 0.76 4.83 16 27 N -0.56 -16.47 9.08 -193.27 -1.75 -18.22 16 28 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 1.48 8.07 -2.39 -0.02 1.46 16 34 H 0.09 1.96 7.30 -2.39 -0.02 1.95 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.24 7.12 -2.38 -0.02 1.22 16 37 H 0.08 1.06 5.98 -2.39 -0.01 1.05 16 38 H 0.15 2.76 6.03 -2.91 -0.02 2.74 16 39 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.04 1.03 8.07 -2.38 -0.02 1.01 16 41 H 0.10 2.15 7.92 -2.38 -0.02 2.13 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 2.64 7.99 -2.39 -0.02 2.62 16 44 H 0.06 2.51 7.95 -2.39 -0.02 2.49 16 45 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 47 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 48 H 0.05 3.06 6.12 -2.38 -0.01 3.05 16 49 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.07 2.68 5.66 -2.38 -0.01 2.67 16 51 H 0.15 4.06 7.93 -2.91 -0.02 4.04 16 Total: -1.00 -71.10 399.59 0.82 -70.29 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.90 Total: 15.90 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 9.24 Total: 22.57 kcal Atomic # 7 Polarization: -138.23 SS G_CDS: -9.93 Total: -148.16 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -1.42 Total: -8.58 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -71.10 0.82 -70.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191306081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.671 kcal (2) G-P(sol) polarization free energy of solvation -71.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds