Wall clock time and date at job start Tue Mar 31 2020 19:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 O 1.52198 * 104.44745 * 180.02562 * 11 10 9 15 15 C 1.35899 * 114.00040 * 75.00388 * 14 11 10 16 16 C 1.38764 * 120.04619 * 269.72301 * 15 14 11 17 17 C 1.38135 * 119.97135 * 179.79343 * 16 15 14 18 18 C 1.38264 * 120.06529 * 0.45602 * 17 16 15 19 19 C 1.38361 * 120.10161 * 359.79575 * 18 17 16 20 20 Cl 1.73595 * 119.98841 * 179.97438 * 19 18 17 21 21 C 1.38291 * 120.02892 * 359.97438 * 19 18 17 22 22 N 1.48014 * 120.03542 * 180.02562 * 21 19 18 23 23 O 1.21804 * 119.99327 * 269.97209 * 22 21 19 24 24 O 1.21793 * 120.00084 * 89.97187 * 22 21 19 25 25 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 27 27 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 28 28 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 29 29 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 30 30 H 1.08007 * 120.01582 * 0.02562 * 16 15 14 31 31 H 1.07995 * 119.96608 * 180.23565 * 17 16 15 32 32 H 1.08005 * 119.95171 * 179.77013 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 8 2.4250 -6.2988 -0.0006 15 6 3.0437 -6.4566 1.1991 16 6 4.1760 -5.7131 1.5000 17 6 4.8012 -5.8717 2.7215 18 6 4.3053 -6.7773 3.6411 19 6 3.1794 -7.5239 3.3420 20 17 2.5597 -8.6606 4.4984 21 6 2.5476 -7.3650 2.1222 22 7 1.3428 -8.1632 1.8023 23 8 1.4571 -9.2459 1.2561 24 8 0.2374 -7.7374 2.0853 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6042 -0.8904 30 1 4.5663 -5.0080 0.7809 31 1 5.6803 -5.2903 2.9571 32 1 4.7977 -6.9025 4.5941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292787700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:10 Heat of formation + Delta-G solvation = -77.953821 kcal Electronic energy + Delta-G solvation = -24976.230529 eV Core-core repulsion = 20866.924451 eV Total energy + Delta-G solvation = -4109.306079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 335.015 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.57682 -41.20772 -39.03995 -37.26732 -37.02823 -36.48588 -35.90713 -34.12479 -32.54958 -31.52484 -31.12622 -26.88278 -25.92930 -24.40763 -23.20500 -22.06238 -21.02423 -19.53870 -18.81149 -18.59624 -18.31361 -17.79163 -16.98683 -16.47890 -16.34508 -15.75966 -15.59207 -15.06744 -14.67956 -14.41607 -13.98746 -13.70303 -13.12022 -12.89753 -12.68757 -12.51657 -12.15367 -11.99317 -11.97048 -11.90825 -11.86434 -11.60346 -11.21946 -11.18368 -11.15484 -11.02744 -10.59046 -10.55444 -10.14838 -9.90823 -9.71220 -9.32876 -8.62478 -6.23978 -4.31221 -0.36461 -0.08854 0.41765 0.47245 0.88555 1.23717 1.95974 2.39639 3.17332 3.24680 3.27104 3.61710 3.71597 3.80290 4.00113 4.13749 4.24508 4.26070 4.28973 4.86601 4.94899 5.10463 5.14180 5.27238 5.30053 5.41783 5.67050 6.15086 6.17915 7.12491 7.17379 7.50741 7.67179 8.01129 8.71644 9.34444 10.86924 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.003882 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.280122 B = 7211.800093 C = 7938.342312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.060 3.940 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.031 3.969 10 C -0.604 4.604 11 S 2.543 3.457 12 O -0.932 6.932 13 O -0.916 6.916 14 O -0.676 6.676 15 C 0.145 3.855 16 C -0.115 4.115 17 C -0.050 4.050 18 C -0.089 4.089 19 C 0.012 3.988 20 Cl -0.018 7.018 21 C -0.006 4.006 22 N 0.004 4.996 23 O -0.144 6.144 24 O -0.068 6.068 25 H 0.266 0.734 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.042 -13.649 8.633 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.736 4.736 11 S 2.644 3.356 12 O -0.930 6.930 13 O -0.914 6.914 14 O -0.633 6.633 15 C 0.101 3.899 16 C -0.136 4.136 17 C -0.068 4.068 18 C -0.109 4.109 19 C -0.016 4.016 20 Cl 0.012 6.988 21 C -0.090 4.090 22 N 0.538 4.462 23 O -0.359 6.359 24 O -0.303 6.303 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.191 0.809 31 H 0.187 0.813 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 13.003 -13.935 8.654 20.932 hybrid contribution 0.319 1.147 -0.244 1.216 sum 13.322 -12.788 8.410 20.292 Atomic orbital electron populations 1.69958 1.06138 1.27345 1.48970 1.25069 0.94991 0.99609 0.94694 0.86390 0.79807 0.83028 0.77908 1.19645 1.20685 1.20702 1.20967 0.93039 0.89450 1.52910 0.91888 1.19001 0.92433 0.89980 0.99399 1.30716 1.14304 1.17996 1.10552 1.07201 0.75462 0.77386 0.75563 1.93738 1.71234 1.83270 1.44759 1.93631 1.69031 1.84081 1.44642 1.85957 1.65504 1.73245 1.38558 1.17369 0.94626 0.97035 0.80873 1.21718 0.92907 0.99487 0.99453 1.21410 0.99313 0.95267 0.90834 1.21353 0.93369 0.94345 1.01838 1.20413 0.96111 0.96167 0.88952 1.98468 1.86278 1.57413 1.56689 1.20845 0.91651 1.00029 0.96432 1.43202 1.02038 1.00898 1.00097 1.94574 1.93126 1.07029 1.41148 1.94727 1.10050 1.72898 1.52639 0.92372 0.94488 0.94353 0.85901 0.85203 0.80910 0.81311 0.81557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.66 9.11 -34.44 -0.31 -13.97 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.61 16 10 C -0.60 -10.76 5.41 37.16 0.20 -10.56 16 11 S 2.54 47.96 5.17 -107.50 -0.56 47.40 16 12 O -0.93 -19.09 13.89 -70.39 -0.98 -20.07 16 13 O -0.92 -20.32 18.09 -67.03 -1.21 -21.53 16 14 O -0.68 -10.93 9.81 -51.75 -0.51 -11.44 16 15 C 0.14 1.99 4.79 -39.22 -0.19 1.81 16 16 C -0.12 -1.04 8.47 -39.42 -0.33 -1.37 16 17 C -0.05 -0.29 10.04 -39.61 -0.40 -0.69 16 18 C -0.09 -0.61 9.83 -39.53 -0.39 -0.99 16 19 C 0.01 0.13 6.32 -39.52 -0.25 -0.12 16 20 Cl -0.02 -0.19 28.44 -51.86 -1.47 -1.66 16 21 C -0.01 -0.09 5.46 -79.76 -0.44 -0.52 16 22 N 0.00 0.07 3.38 34.05 0.12 0.18 16 23 O -0.14 -2.49 19.26 -29.46 -0.57 -3.06 16 24 O -0.07 -1.31 16.92 -36.41 -0.62 -1.93 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.12 1.79 6.62 -51.92 -0.34 1.45 16 29 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 30 H 0.17 1.09 7.52 -52.48 -0.39 0.70 16 31 H 0.17 0.29 8.06 -52.49 -0.42 -0.14 16 32 H 0.17 0.53 8.06 -52.48 -0.42 0.10 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -35.58 319.70 -10.00 -45.58 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: -2.39 Total: -4.45 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -2.34 Total: -24.30 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.85 Total: -24.54 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -3.88 Total: -58.02 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 47.96 SS G_CDS: -0.56 Total: 47.40 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.47 Total: -1.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.58 -10.00 -45.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292787700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.374 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds