Wall clock time and date at job start Tue Mar 31 2020 18:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99899 * 2 1 4 4 H 1.48497 * 109.47095 * 240.00188 * 3 2 1 5 5 H 1.48499 * 109.46745 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46872 * 119.99708 * 3 2 1 7 7 C 1.37880 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99415 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46712 * 180.02562 * 9 7 2 11 11 C 1.39052 * 120.00048 * 180.02562 * 10 9 7 12 12 N 1.32415 * 119.69353 * 0.02562 * 11 10 9 13 13 C 1.31951 * 121.63375 * 179.97438 * 12 11 10 14 14 C 1.38145 * 120.83787 * 0.02562 * 13 12 11 15 15 Br 1.89101 * 120.34017 * 180.02562 * 14 13 12 16 16 C 1.38905 * 119.31144 * 0.02562 * 14 13 12 17 17 C 1.38349 * 118.49566 * 359.97438 * 16 14 13 18 18 S 1.76195 * 120.44316 * 180.02562 * 17 16 14 19 19 N 1.65604 * 107.21932 * 115.00007 * 18 17 16 20 20 O 1.42094 * 106.40443 * 228.54294 * 18 17 16 21 21 O 1.42108 * 106.40402 * 1.46429 * 18 17 16 22 22 H 0.96998 * 120.00367 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47353 * 60.00778 * 9 7 2 24 24 H 1.08996 * 109.47674 * 300.00032 * 9 7 2 25 25 H 0.97003 * 119.99994 * 359.97438 * 10 9 7 26 26 H 1.07993 * 119.57745 * 180.28193 * 13 12 11 27 27 H 1.07993 * 120.74987 * 179.97438 * 16 14 13 28 28 H 0.97000 * 119.99441 * 359.97438 * 19 18 17 29 29 H 0.96993 * 120.00015 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7397 -4.9237 -0.0011 12 7 0.4366 -5.1587 -0.0021 13 6 -0.0451 -6.3872 -0.0031 14 6 0.8007 -7.4794 -0.0027 15 35 0.0952 -9.2339 -0.0049 16 6 2.1747 -7.2755 -0.0005 17 6 2.6491 -5.9759 0.0005 18 16 4.3822 -5.6581 0.0025 19 7 4.7454 -4.9116 -1.4304 20 8 4.6130 -4.6985 1.0248 21 8 5.0227 -6.9262 -0.0321 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 3.1568 -3.4353 -0.0009 26 1 -1.1141 -6.5406 -0.0086 27 1 2.8571 -8.1125 0.0003 28 1 4.0438 -4.7346 -2.0764 29 1 5.6597 -4.6521 -1.6239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309571182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:43 Heat of formation + Delta-G solvation = -36.192362 kcal Electronic energy + Delta-G solvation = -18768.228200 eV Core-core repulsion = 15478.598099 eV Total energy + Delta-G solvation = -3289.630101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 334.973 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22300 -37.25658 -35.81706 -35.68979 -33.23850 -33.01013 -32.72903 -31.47524 -29.03426 -26.71870 -24.45555 -23.14549 -21.70500 -19.58410 -18.48538 -17.93992 -17.27959 -16.77558 -16.31151 -15.82473 -15.35685 -14.84564 -14.66177 -14.57841 -13.67569 -13.27176 -12.92013 -12.77913 -12.22010 -12.13799 -12.05478 -11.88379 -11.37342 -11.30176 -11.03560 -10.93735 -10.52381 -10.49504 -10.33095 -10.27308 -9.66648 -9.56967 -9.32626 -8.68252 -7.58703 -6.28905 -4.36542 0.39867 0.77552 1.25807 1.62156 3.10015 3.20192 3.25130 3.26485 3.44661 3.53720 3.76261 4.24639 4.50590 4.59491 4.71021 5.08128 5.14827 5.29247 5.45752 5.76969 5.96330 6.22878 6.87430 6.98070 7.27498 7.31960 7.42622 7.76684 7.90723 8.30654 8.70340 9.29746 10.80832 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.004064 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.756559 B = 6888.782837 C = 8443.860717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.249 3.751 10 N -0.676 5.676 11 C 0.494 3.506 12 N -0.526 5.526 13 C 0.247 3.753 14 C -0.250 4.250 15 Br -0.047 7.047 16 C 0.102 3.898 17 C -0.811 4.811 18 S 2.708 3.292 19 N -1.251 6.251 20 O -0.957 6.957 21 O -0.970 6.970 22 H 0.268 0.732 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.407 0.593 26 H 0.168 0.832 27 H 0.156 0.844 28 H 0.419 0.581 29 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -16.525 -3.514 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.084 0.916 9 C 0.129 3.871 10 N -0.298 5.298 11 C 0.249 3.751 12 N -0.244 5.244 13 C 0.079 3.921 14 C -0.336 4.336 15 Br 0.036 6.964 16 C 0.074 3.926 17 C -0.909 4.909 18 S 2.796 3.204 19 N -0.927 5.927 20 O -0.946 6.946 21 O -0.959 6.959 22 H 0.078 0.922 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.246 0.754 26 H 0.185 0.815 27 H 0.174 0.826 28 H 0.246 0.754 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.166 -16.257 -2.645 16.613 hybrid contribution 0.752 0.860 -0.595 1.288 sum 2.918 -15.397 -3.240 16.003 Atomic orbital electron populations 1.69941 1.06068 1.27693 1.48348 1.24902 0.94949 0.99451 0.94336 0.86435 0.79446 0.81950 0.78930 1.19952 1.20974 1.19852 1.21164 0.93515 0.90170 1.54115 0.91628 1.19402 0.87888 0.81089 0.98672 1.46343 1.11697 1.02490 1.69249 1.18039 0.88576 0.85348 0.83095 1.67671 1.12845 1.22398 1.21476 1.22878 1.00050 0.85466 0.83734 1.22353 0.96071 0.92360 1.22803 1.96635 1.85611 1.15800 1.98362 1.20922 0.94194 0.94927 0.82544 1.30483 1.24906 0.99770 1.35769 1.01305 0.72639 0.73739 0.72706 1.53077 1.19352 1.81191 1.39035 1.93647 1.84078 1.61579 1.55266 1.93560 1.73424 1.42615 1.86280 0.92218 0.94357 0.94446 0.75406 0.81454 0.82621 0.75378 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 13.29 55.43 0.74 -24.00 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 7 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 15 8 H 0.07 1.66 7.60 -52.49 -0.40 1.26 15 9 C 0.25 6.13 5.45 -5.19 -0.03 6.11 15 10 N -0.68 -13.73 5.53 -61.60 -0.34 -14.07 15 11 C 0.49 9.02 7.45 -154.98 -1.15 7.87 15 12 N -0.53 -9.59 9.56 -12.41 -0.12 -9.71 15 13 C 0.25 3.58 10.93 -17.53 -0.19 3.39 15 14 C -0.25 -3.35 6.24 -39.37 -0.25 -3.60 15 15 Br -0.05 -0.52 33.73 -68.01 -2.29 -2.82 15 16 C 0.10 1.41 9.42 -39.29 -0.37 1.04 15 17 C -0.81 -12.46 5.91 -39.23 -0.23 -12.69 15 18 S 2.71 38.33 5.55 -107.50 -0.60 37.73 15 19 N -1.25 -13.07 9.19 60.35 0.55 -12.52 15 20 O -0.96 -16.98 16.32 -57.17 -0.93 -17.91 15 21 O -0.97 -14.91 17.05 -57.17 -0.97 -15.88 15 22 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 23 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.41 7.78 5.40 -40.82 -0.22 7.56 15 26 H 0.17 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.16 1.86 7.43 -52.49 -0.39 1.47 15 28 H 0.42 3.91 8.92 -34.47 -0.31 3.60 15 29 H 0.42 3.37 8.96 -34.47 -0.31 3.06 15 LS Contribution 292.17 15.07 4.40 4.40 Total: -1.00 -32.05 292.17 -9.25 -41.30 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.03 Total: 9.08 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.64 Total: -10.98 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.83 Total: -60.29 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.91 Total: -33.79 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 38.33 SS G_CDS: -0.60 Total: 37.73 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.05 -9.25 -41.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309571182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.104 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds