Wall clock time and date at job start Tue Mar 31 2020 18:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99899 * 2 1 4 4 H 1.48497 * 109.47095 * 240.00188 * 3 2 1 5 5 H 1.48499 * 109.46745 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46872 * 119.99708 * 3 2 1 7 7 C 1.37880 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99415 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46712 * 180.02562 * 9 7 2 11 11 C 1.39052 * 120.00048 * 180.02562 * 10 9 7 12 12 N 1.32415 * 119.69353 * 0.02562 * 11 10 9 13 13 C 1.31951 * 121.63375 * 179.97438 * 12 11 10 14 14 C 1.38145 * 120.83787 * 0.02562 * 13 12 11 15 15 Br 1.89101 * 120.34017 * 180.02562 * 14 13 12 16 16 C 1.38905 * 119.31144 * 0.02562 * 14 13 12 17 17 C 1.38349 * 118.49566 * 359.97438 * 16 14 13 18 18 S 1.76195 * 120.44316 * 180.02562 * 17 16 14 19 19 N 1.65604 * 107.21932 * 115.00007 * 18 17 16 20 20 O 1.42094 * 106.40443 * 228.54294 * 18 17 16 21 21 O 1.42108 * 106.40402 * 1.46429 * 18 17 16 22 22 H 0.96998 * 120.00367 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47353 * 60.00778 * 9 7 2 24 24 H 1.08996 * 109.47674 * 300.00032 * 9 7 2 25 25 H 0.97003 * 119.99994 * 359.97438 * 10 9 7 26 26 H 1.07993 * 119.57745 * 180.28193 * 13 12 11 27 27 H 1.07993 * 120.74987 * 179.97438 * 16 14 13 28 28 H 0.97000 * 119.99441 * 359.97438 * 19 18 17 29 29 H 0.96993 * 120.00015 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7397 -4.9237 -0.0011 12 7 0.4366 -5.1587 -0.0021 13 6 -0.0451 -6.3872 -0.0031 14 6 0.8007 -7.4794 -0.0027 15 35 0.0952 -9.2339 -0.0049 16 6 2.1747 -7.2755 -0.0005 17 6 2.6491 -5.9759 0.0005 18 16 4.3822 -5.6581 0.0025 19 7 4.7454 -4.9116 -1.4304 20 8 4.6130 -4.6985 1.0248 21 8 5.0227 -6.9262 -0.0321 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 3.1568 -3.4353 -0.0009 26 1 -1.1141 -6.5406 -0.0086 27 1 2.8571 -8.1125 0.0003 28 1 4.0438 -4.7346 -2.0764 29 1 5.6597 -4.6521 -1.6239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309571182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:43 Heat of formation + Delta-G solvation = -61.873302 kcal Electronic energy + Delta-G solvation = -18769.341809 eV Core-core repulsion = 15478.598099 eV Total energy + Delta-G solvation = -3290.743710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 334.973 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51761 -38.52007 -37.21285 -37.04594 -34.88394 -34.16917 -34.00040 -32.77819 -30.44929 -28.38911 -25.80653 -24.72601 -23.24635 -20.72809 -19.86760 -19.11294 -18.50146 -18.14259 -17.96844 -16.94048 -16.68695 -16.53892 -16.03926 -15.89537 -15.17626 -14.62343 -14.44990 -14.11728 -14.06521 -13.32043 -13.30547 -13.16693 -12.91750 -12.85453 -12.51663 -12.46449 -12.23263 -11.53577 -11.52980 -11.47487 -11.44963 -11.03779 -10.59985 -10.58290 -9.02834 -8.31290 -6.46486 -0.74848 -0.44544 0.02163 0.52022 1.42231 1.45303 1.53082 1.98538 2.05310 2.28545 2.39708 2.56979 3.04023 3.27252 3.34842 3.60942 3.93387 4.08575 4.24758 4.61317 4.90354 5.15811 5.16844 5.25314 5.45627 5.75596 5.85530 6.23097 6.25264 6.61348 6.95814 7.25173 8.79465 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.004064 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.756559 B = 6888.782837 C = 8443.860717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.273 3.727 10 N -0.690 5.690 11 C 0.480 3.520 12 N -0.564 5.564 13 C 0.241 3.759 14 C -0.240 4.240 15 Br -0.015 7.015 16 C 0.099 3.901 17 C -0.804 4.804 18 S 2.731 3.269 19 N -1.236 6.236 20 O -0.993 6.993 21 O -0.978 6.978 22 H 0.270 0.730 23 H 0.015 0.985 24 H 0.001 0.999 25 H 0.411 0.589 26 H 0.195 0.805 27 H 0.180 0.820 28 H 0.426 0.574 29 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -17.680 -4.086 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.605 4.605 8 H 0.091 0.909 9 C 0.151 3.849 10 N -0.316 5.316 11 C 0.238 3.762 12 N -0.282 5.282 13 C 0.075 3.925 14 C -0.325 4.325 15 Br 0.069 6.931 16 C 0.071 3.929 17 C -0.901 4.901 18 S 2.818 3.182 19 N -0.917 5.917 20 O -0.982 6.982 21 O -0.967 6.967 22 H 0.079 0.921 23 H 0.033 0.967 24 H 0.019 0.981 25 H 0.250 0.750 26 H 0.212 0.788 27 H 0.197 0.803 28 H 0.256 0.744 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.088 -17.496 -3.229 18.057 hybrid contribution 0.396 0.959 -0.434 1.125 sum 3.484 -16.537 -3.663 17.292 Atomic orbital electron populations 1.70068 1.07716 1.28666 1.49341 1.25847 0.95774 1.03175 0.93738 0.85364 0.78180 0.77326 0.79369 1.18518 1.20627 1.19478 1.21555 0.94086 0.91112 1.53785 0.90905 1.18758 0.87937 0.82391 0.95817 1.45882 1.10958 1.02451 1.72310 1.18181 0.89281 0.85043 0.83743 1.67625 1.13316 1.24634 1.22638 1.23345 1.01516 0.84663 0.82930 1.22564 0.95973 0.93765 1.20239 1.96684 1.85211 1.13016 1.98192 1.21288 0.94894 0.94886 0.81825 1.30576 1.25060 0.99637 1.34797 1.00512 0.71715 0.73213 0.72740 1.52718 1.20474 1.80713 1.37815 1.93609 1.84411 1.62610 1.57529 1.93548 1.73325 1.43148 1.86676 0.92080 0.96701 0.98080 0.74956 0.78837 0.80289 0.74412 0.73232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.76 13.29 21.45 0.28 -52.47 15 2 C 0.02 0.84 5.46 84.66 0.46 1.30 15 3 Si 0.97 41.77 29.54 68.60 2.03 43.79 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 15 7 C -0.57 -30.45 9.28 25.60 0.24 -30.21 15 8 H 0.07 3.70 7.60 -2.91 -0.02 3.68 15 9 C 0.27 14.03 5.45 85.63 0.47 14.49 15 10 N -0.69 -28.82 5.53 -348.79 -1.93 -30.75 15 11 C 0.48 17.71 7.45 133.03 0.99 18.70 15 12 N -0.56 -20.83 9.56 -193.18 -1.85 -22.68 15 13 C 0.24 6.75 10.93 84.65 0.93 7.67 15 14 C -0.24 -5.95 6.24 22.41 0.14 -5.81 15 15 Br -0.01 -0.28 33.73 -20.37 -0.69 -0.97 15 16 C 0.10 2.54 9.42 22.46 0.21 2.75 15 17 C -0.80 -24.01 5.91 22.50 0.13 -23.88 15 18 S 2.73 74.40 5.55 -56.49 -0.31 74.09 15 19 N -1.24 -24.12 9.19 37.02 0.34 -23.78 15 20 O -0.99 -34.95 16.32 -128.00 -2.09 -37.04 15 21 O -0.98 -28.20 17.05 -128.00 -2.18 -30.38 15 22 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 23 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 25 H 0.41 15.97 5.40 -92.71 -0.50 15.47 15 26 H 0.19 4.17 8.06 -2.91 -0.02 4.15 15 27 H 0.18 3.75 7.43 -2.91 -0.02 3.73 15 28 H 0.43 7.42 8.92 -96.75 -0.86 6.55 15 29 H 0.43 6.19 8.96 -96.75 -0.87 5.32 15 Total: -1.00 -69.39 292.17 -3.82 -73.20 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.99 Total: 21.97 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.57 Total: -14.98 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -3.15 Total: -129.68 kcal Atomic # 8 Polarization: -63.15 SS G_CDS: -4.27 Total: -67.42 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 74.40 SS G_CDS: -0.31 Total: 74.09 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -0.69 Total: -0.97 kcal Total: -69.39 -3.82 -73.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309571182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.330 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds