Wall clock time and date at job start Tue Mar 31 2020 18:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47053 * 2 1 4 4 C 1.30996 * 120.00039 * 120.00149 * 3 2 1 5 5 N 1.34563 * 119.89448 * 359.97438 * 4 3 2 6 6 C 1.31515 * 121.25312 * 179.97438 * 5 4 3 7 7 N 1.36664 * 119.51906 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00237 * 2.30298 * 7 6 5 9 9 C 1.52998 * 109.47334 * 59.58285 * 8 7 6 10 10 C 1.53005 * 109.47441 * 179.58338 * 8 7 6 11 11 C 1.53002 * 109.47158 * 299.58211 * 8 7 6 12 12 N 1.36958 * 120.96103 * 0.02562 * 6 5 4 13 13 H 0.97004 * 120.14597 * 180.02562 * 12 6 5 14 14 C 1.38094 * 119.71374 * 359.97438 * 12 6 5 15 15 N 1.30237 * 120.59316 * 179.97438 * 14 12 6 16 16 C 1.46498 * 119.99978 * 186.02454 * 15 14 12 17 17 C 1.52996 * 109.47307 * 120.24450 * 16 15 14 18 18 C 1.50702 * 115.55313 * 330.30453 * 17 16 15 19 19 H 1.08004 * 119.99781 * 269.44691 * 18 17 16 20 20 C 1.37872 * 119.99829 * 89.43528 * 18 17 16 21 21 N 1.31518 * 119.99824 * 184.64339 * 20 18 17 22 22 Si 1.86802 * 120.00102 * 4.65305 * 20 18 17 23 23 H 1.48502 * 109.47284 * 84.88662 * 22 20 18 24 24 H 1.48503 * 109.46904 * 204.88333 * 22 20 18 25 25 H 1.48493 * 109.47059 * 324.88133 * 22 20 18 26 26 C 1.53008 * 117.49814 * 184.63413 * 17 16 15 27 27 C 1.53000 * 60.03015 * 252.47578 * 26 17 16 28 28 N 1.38033 * 118.81579 * 0.25751 * 14 12 6 29 29 H 0.97005 * 120.47716 * 179.72326 * 28 14 12 30 30 H 1.08999 * 109.47259 * 300.00134 * 1 2 3 31 31 H 1.08997 * 109.47009 * 60.00252 * 1 2 3 32 32 H 1.09005 * 109.46935 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47259 * 239.99866 * 2 1 3 34 34 H 1.09001 * 109.47449 * 119.99961 * 2 1 3 35 35 H 0.97008 * 119.99790 * 182.30152 * 7 6 5 36 36 H 1.09002 * 109.47511 * 64.74540 * 9 8 7 37 37 H 1.08994 * 109.47294 * 184.75271 * 9 8 7 38 38 H 1.09000 * 109.46929 * 304.75051 * 9 8 7 39 39 H 1.09000 * 109.47155 * 59.99800 * 10 8 7 40 40 H 1.09000 * 109.47422 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.46608 * 299.99855 * 10 8 7 42 42 H 1.08997 * 109.46904 * 66.14573 * 11 8 7 43 43 H 1.08996 * 109.46992 * 186.14923 * 11 8 7 44 44 H 1.09003 * 109.47197 * 306.14958 * 11 8 7 45 45 H 1.09001 * 109.47424 * 0.24087 * 16 15 14 46 46 H 1.09002 * 109.46773 * 240.24220 * 16 15 14 47 47 H 0.97001 * 119.99701 * 180.02562 * 21 20 18 48 48 H 1.09000 * 117.49871 * 359.97438 * 26 17 16 49 49 H 1.08994 * 117.49414 * 144.97637 * 26 17 16 50 50 H 1.08996 * 117.50034 * 107.50545 * 27 26 17 51 51 H 1.08997 * 117.49853 * 252.52265 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.7714 1.8097 0.9825 5 7 3.0948 0.9794 1.9909 6 6 3.8495 1.3813 2.9902 7 7 4.1556 0.5084 3.9962 8 6 3.6862 -0.8778 3.9313 9 6 4.2398 -1.5454 2.6709 10 6 4.1715 -1.6390 5.1667 11 6 2.1569 -0.8969 3.8888 12 7 4.3322 2.6621 3.0379 13 1 4.8881 2.9458 3.7805 14 6 4.0249 3.5476 2.0238 15 7 4.4743 4.7697 2.0521 16 6 4.0347 5.7354 1.0420 17 6 3.3455 6.9152 1.7302 18 6 2.6486 6.5944 3.0274 19 1 1.6090 6.3018 3.0238 20 6 3.3383 6.6744 4.2185 21 7 2.7582 6.3071 5.3402 22 14 5.0967 7.3046 4.2391 23 1 5.0901 8.7882 4.3048 24 1 5.8039 6.7598 5.4259 25 1 5.7940 6.8668 3.0033 26 6 2.7158 7.9852 0.8358 27 6 4.0036 8.2914 1.6031 28 7 3.2280 3.1162 0.9825 29 1 2.9939 3.7192 0.2597 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.6838 0.8067 4.7532 36 1 5.3259 -1.6076 2.7398 37 1 3.8236 -2.5484 2.5783 38 1 3.9644 -0.9556 1.7966 39 1 3.7771 -1.1635 6.0647 40 1 3.8218 -2.6703 5.1187 41 1 5.2610 -1.6254 5.1969 42 1 1.8138 -0.4510 2.9552 43 1 1.8046 -1.9265 3.9507 44 1 1.7628 -0.3268 4.7301 45 1 3.3349 5.2537 0.3591 46 1 4.8986 6.0950 0.4830 47 1 3.2433 6.3638 6.1782 48 1 2.7931 7.8487 -0.2428 49 1 1.7975 8.4567 1.1855 50 1 4.9280 8.3564 1.0293 51 1 3.9324 8.9641 2.4578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343042733.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:55 Heat of formation + Delta-G solvation = 134.074025 kcal Electronic energy + Delta-G solvation = -30597.291255 eV Core-core repulsion = 26762.495915 eV Total energy + Delta-G solvation = -3834.795340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.218 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.97003 -38.54622 -37.17794 -36.20029 -35.07964 -33.16556 -31.97056 -31.67958 -31.07218 -29.24346 -27.53469 -27.27333 -26.58093 -25.27324 -23.44824 -22.59136 -21.64347 -20.78526 -19.98911 -19.15827 -18.93495 -18.32679 -17.22333 -16.16886 -16.08090 -15.69213 -15.56153 -14.90780 -14.54047 -14.49726 -14.34096 -13.93587 -13.84027 -13.67198 -13.30302 -12.74715 -12.59918 -12.52080 -12.43797 -12.26532 -12.05865 -11.89667 -11.84083 -11.71196 -11.38509 -11.13073 -11.09341 -11.07665 -10.81100 -10.65438 -10.32770 -10.13788 -9.89574 -9.65695 -9.17731 -9.13427 -8.85456 -8.74308 -8.48001 -8.21736 -7.68061 -7.46012 -5.99228 -4.03071 1.69468 2.14050 2.73293 3.18710 3.43785 3.47771 3.50440 3.70874 4.09707 4.54846 4.62896 4.67785 4.75496 4.84646 4.92471 5.25290 5.31117 5.33798 5.38795 5.46515 5.58592 5.64994 5.69576 5.69711 5.80428 5.81800 5.86227 5.91002 5.92353 5.95175 6.12133 6.17134 6.21657 6.30533 6.34703 6.37965 6.40171 6.47493 6.51016 6.56746 6.63605 6.73379 6.88602 7.07223 7.12819 7.15159 7.20914 7.63610 7.84764 8.44212 8.55722 8.56433 8.87985 9.00242 9.67723 11.11500 Molecular weight = 334.22amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.004185 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.182272 B = 6689.305537 C = 8052.086799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 N -0.616 5.616 4 C 0.572 3.428 5 N -0.637 5.637 6 C 0.678 3.322 7 N -0.695 5.695 8 C 0.191 3.809 9 C -0.166 4.166 10 C -0.157 4.157 11 C -0.167 4.167 12 N -0.650 5.650 13 H 0.427 0.573 14 C 0.589 3.411 15 N -0.546 5.546 16 C 0.108 3.892 17 C 0.010 3.990 18 C -0.479 4.479 19 H 0.068 0.932 20 C 0.094 3.906 21 N -0.905 5.905 22 Si 0.894 3.106 23 H -0.294 1.294 24 H -0.306 1.306 25 H -0.244 1.244 26 C -0.183 4.183 27 C -0.203 4.203 28 N -0.685 5.685 29 H 0.426 0.574 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.409 0.591 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.260 0.740 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -16.812 -2.721 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 N -0.350 5.350 4 C 0.203 3.797 5 N -0.388 5.388 6 C 0.315 3.685 7 N -0.334 5.334 8 C 0.106 3.894 9 C -0.224 4.224 10 C -0.215 4.215 11 C -0.226 4.226 12 N -0.289 5.289 13 H 0.266 0.734 14 C 0.223 3.777 15 N -0.276 5.276 16 C -0.023 4.023 17 C 0.009 3.991 18 C -0.516 4.516 19 H 0.086 0.914 20 C -0.108 4.108 21 N -0.543 5.543 22 Si 0.723 3.277 23 H -0.221 1.221 24 H -0.234 1.234 25 H -0.168 1.168 26 C -0.221 4.221 27 C -0.240 4.240 28 N -0.334 5.334 29 H 0.268 0.732 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.091 0.909 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.264 -16.912 -3.191 17.731 hybrid contribution 1.179 1.062 0.769 1.763 sum 5.442 -15.850 -2.422 16.933 Atomic orbital electron populations 1.21733 0.96133 1.00231 1.01773 1.21518 0.94330 0.89567 1.00582 1.72636 1.21525 1.17238 1.23636 1.19853 0.89855 0.81523 0.88460 1.69416 1.29680 1.32849 1.06822 1.18954 0.83753 0.78499 0.87278 1.44334 1.57755 1.09969 1.21300 1.20289 0.95040 0.78062 0.96013 1.22289 1.00076 1.00871 0.99179 1.22114 1.01639 1.00907 0.96801 1.22325 0.93588 1.01852 1.04796 1.41937 1.53427 1.08717 1.24845 0.73366 1.18580 0.88075 0.88167 0.82911 1.72227 1.28831 0.97020 1.29484 1.21436 0.96610 0.92964 0.91283 1.19445 0.97436 0.85301 0.96964 1.20031 0.97563 1.46773 0.87252 0.91388 1.24823 0.97605 0.93488 0.94903 1.69960 1.37855 1.48036 0.98418 0.86649 0.85798 0.77435 0.77780 1.22109 1.23394 1.16766 1.22887 0.96665 1.06639 0.95884 1.23051 0.95178 1.03248 1.02503 1.43542 1.52463 1.12119 1.25254 0.73165 0.93312 0.92865 0.93156 0.92710 0.92148 0.75380 0.93211 0.91867 0.89089 0.91746 0.90467 0.91955 0.88797 0.92148 0.92823 0.95346 0.92028 0.93113 0.91038 0.89544 0.90945 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.07 1.06 7.05 -4.04 -0.03 1.03 16 3 N -0.62 -10.90 10.66 -62.16 -0.66 -11.56 16 4 C 0.57 10.08 8.45 -321.99 -2.72 7.35 16 5 N -0.64 -9.70 3.86 -14.45 -0.06 -9.76 16 6 C 0.68 9.41 7.93 -320.53 -2.54 6.86 16 7 N -0.70 -6.96 5.17 -49.15 -0.25 -7.21 16 8 C 0.19 1.69 1.06 -131.82 -0.14 1.55 16 9 C -0.17 -1.52 8.45 37.16 0.31 -1.20 16 10 C -0.16 -0.98 8.59 37.16 0.32 -0.66 16 11 C -0.17 -1.72 8.31 37.16 0.31 -1.41 16 12 N -0.65 -10.13 5.47 -13.86 -0.08 -10.21 16 13 H 0.43 6.02 8.88 -40.82 -0.36 5.66 16 14 C 0.59 11.03 8.54 -318.56 -2.72 8.31 16 15 N -0.55 -11.40 8.13 -61.48 -0.50 -11.90 16 16 C 0.11 2.20 6.32 -4.04 -0.03 2.18 16 17 C 0.01 0.23 1.40 -155.62 -0.22 0.01 16 18 C -0.48 -13.26 8.67 -34.44 -0.30 -13.55 16 19 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 20 C 0.09 2.64 5.25 -17.82 -0.09 2.55 16 21 N -0.91 -27.03 13.96 55.43 0.77 -26.25 16 22 Si 0.89 22.36 23.79 -169.99 -4.04 18.31 16 23 H -0.29 -7.38 6.91 56.52 0.39 -6.99 16 24 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.24 -5.90 6.46 56.52 0.37 -5.54 16 26 C -0.18 -3.73 9.95 -26.73 -0.27 -4.00 16 27 C -0.20 -4.37 7.31 -26.69 -0.20 -4.56 16 28 N -0.69 -12.38 5.41 -14.10 -0.08 -12.46 16 29 H 0.43 7.59 6.30 -40.82 -0.26 7.33 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.87 5.20 -51.93 -0.27 0.60 16 35 H 0.41 3.18 8.53 -40.82 -0.35 2.83 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.08 5.53 -51.93 -0.29 0.80 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 1.22 4.97 -51.93 -0.26 0.96 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.54 5.44 -51.93 -0.28 0.26 16 46 H 0.06 1.18 7.88 -51.93 -0.41 0.77 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 50 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 51 H 0.09 1.98 6.50 -51.93 -0.34 1.64 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -32.69 393.95 -15.22 -47.91 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -8.33 Total: 14.27 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -7.93 Total: 2.93 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -0.85 Total: -89.36 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.04 Total: 18.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.69 -15.22 -47.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343042733.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.979 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds