Wall clock time and date at job start Tue Mar 31 2020 18:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47053 * 2 1 4 4 C 1.30996 * 120.00039 * 120.00149 * 3 2 1 5 5 N 1.34563 * 119.89448 * 359.97438 * 4 3 2 6 6 C 1.31515 * 121.25312 * 179.97438 * 5 4 3 7 7 N 1.36664 * 119.51906 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00237 * 2.30298 * 7 6 5 9 9 C 1.52998 * 109.47334 * 59.58285 * 8 7 6 10 10 C 1.53005 * 109.47441 * 179.58338 * 8 7 6 11 11 C 1.53002 * 109.47158 * 299.58211 * 8 7 6 12 12 N 1.36958 * 120.96103 * 0.02562 * 6 5 4 13 13 H 0.97004 * 120.14597 * 180.02562 * 12 6 5 14 14 C 1.38094 * 119.71374 * 359.97438 * 12 6 5 15 15 N 1.30237 * 120.59316 * 179.97438 * 14 12 6 16 16 C 1.46498 * 119.99978 * 186.02454 * 15 14 12 17 17 C 1.52996 * 109.47307 * 120.24450 * 16 15 14 18 18 C 1.50702 * 115.55313 * 330.30453 * 17 16 15 19 19 H 1.08004 * 119.99781 * 269.44691 * 18 17 16 20 20 C 1.37872 * 119.99829 * 89.43528 * 18 17 16 21 21 N 1.31518 * 119.99824 * 184.64339 * 20 18 17 22 22 Si 1.86802 * 120.00102 * 4.65305 * 20 18 17 23 23 H 1.48502 * 109.47284 * 84.88662 * 22 20 18 24 24 H 1.48503 * 109.46904 * 204.88333 * 22 20 18 25 25 H 1.48493 * 109.47059 * 324.88133 * 22 20 18 26 26 C 1.53008 * 117.49814 * 184.63413 * 17 16 15 27 27 C 1.53000 * 60.03015 * 252.47578 * 26 17 16 28 28 N 1.38033 * 118.81579 * 0.25751 * 14 12 6 29 29 H 0.97005 * 120.47716 * 179.72326 * 28 14 12 30 30 H 1.08999 * 109.47259 * 300.00134 * 1 2 3 31 31 H 1.08997 * 109.47009 * 60.00252 * 1 2 3 32 32 H 1.09005 * 109.46935 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47259 * 239.99866 * 2 1 3 34 34 H 1.09001 * 109.47449 * 119.99961 * 2 1 3 35 35 H 0.97008 * 119.99790 * 182.30152 * 7 6 5 36 36 H 1.09002 * 109.47511 * 64.74540 * 9 8 7 37 37 H 1.08994 * 109.47294 * 184.75271 * 9 8 7 38 38 H 1.09000 * 109.46929 * 304.75051 * 9 8 7 39 39 H 1.09000 * 109.47155 * 59.99800 * 10 8 7 40 40 H 1.09000 * 109.47422 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.46608 * 299.99855 * 10 8 7 42 42 H 1.08997 * 109.46904 * 66.14573 * 11 8 7 43 43 H 1.08996 * 109.46992 * 186.14923 * 11 8 7 44 44 H 1.09003 * 109.47197 * 306.14958 * 11 8 7 45 45 H 1.09001 * 109.47424 * 0.24087 * 16 15 14 46 46 H 1.09002 * 109.46773 * 240.24220 * 16 15 14 47 47 H 0.97001 * 119.99701 * 180.02562 * 21 20 18 48 48 H 1.09000 * 117.49871 * 359.97438 * 26 17 16 49 49 H 1.08994 * 117.49414 * 144.97637 * 26 17 16 50 50 H 1.08996 * 117.50034 * 107.50545 * 27 26 17 51 51 H 1.08997 * 117.49853 * 252.52265 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.7714 1.8097 0.9825 5 7 3.0948 0.9794 1.9909 6 6 3.8495 1.3813 2.9902 7 7 4.1556 0.5084 3.9962 8 6 3.6862 -0.8778 3.9313 9 6 4.2398 -1.5454 2.6709 10 6 4.1715 -1.6390 5.1667 11 6 2.1569 -0.8969 3.8888 12 7 4.3322 2.6621 3.0379 13 1 4.8881 2.9458 3.7805 14 6 4.0249 3.5476 2.0238 15 7 4.4743 4.7697 2.0521 16 6 4.0347 5.7354 1.0420 17 6 3.3455 6.9152 1.7302 18 6 2.6486 6.5944 3.0274 19 1 1.6090 6.3018 3.0238 20 6 3.3383 6.6744 4.2185 21 7 2.7582 6.3071 5.3402 22 14 5.0967 7.3046 4.2391 23 1 5.0901 8.7882 4.3048 24 1 5.8039 6.7598 5.4259 25 1 5.7940 6.8668 3.0033 26 6 2.7158 7.9852 0.8358 27 6 4.0036 8.2914 1.6031 28 7 3.2280 3.1162 0.9825 29 1 2.9939 3.7192 0.2597 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.6838 0.8067 4.7532 36 1 5.3259 -1.6076 2.7398 37 1 3.8236 -2.5484 2.5783 38 1 3.9644 -0.9556 1.7966 39 1 3.7771 -1.1635 6.0647 40 1 3.8218 -2.6703 5.1187 41 1 5.2610 -1.6254 5.1969 42 1 1.8138 -0.4510 2.9552 43 1 1.8046 -1.9265 3.9507 44 1 1.7628 -0.3268 4.7301 45 1 3.3349 5.2537 0.3591 46 1 4.8986 6.0950 0.4830 47 1 3.2433 6.3638 6.1782 48 1 2.7931 7.8487 -0.2428 49 1 1.7975 8.4567 1.1855 50 1 4.9280 8.3564 1.0293 51 1 3.9324 8.9641 2.4578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343042733.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:54 Heat of formation + Delta-G solvation = 117.917381 kcal Electronic energy + Delta-G solvation = -30597.991860 eV Core-core repulsion = 26762.495915 eV Total energy + Delta-G solvation = -3835.495945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.218 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20350 -39.62483 -38.74765 -37.49328 -36.32804 -34.42905 -34.12214 -32.85653 -32.22163 -30.47143 -28.23928 -28.13866 -28.06154 -27.23128 -24.62336 -23.86511 -23.30268 -21.98967 -21.09359 -20.71688 -20.34652 -19.68561 -18.32331 -18.10039 -17.43775 -16.87473 -16.81329 -16.45133 -15.81038 -15.73660 -15.57243 -15.31007 -15.15304 -14.76292 -14.63607 -14.48915 -13.91687 -13.78529 -13.59728 -13.16244 -12.99135 -12.96553 -12.91552 -12.81651 -12.75122 -12.59018 -12.32568 -12.16143 -12.03871 -12.00216 -11.85935 -11.81919 -11.57766 -11.05144 -10.94108 -10.62934 -10.54491 -10.15913 -10.01628 -9.91891 -9.10376 -8.74528 -8.17644 -6.24256 0.49768 0.96183 1.32279 1.45467 1.47867 1.72137 1.87972 2.37783 2.55119 2.79636 3.16893 3.22764 3.57119 3.89135 3.93225 4.05584 4.07210 4.21031 4.23571 4.30630 4.43261 4.51776 4.64161 4.67273 4.74180 4.76705 4.79219 4.84614 4.86148 4.88245 4.96916 4.98771 5.03677 5.07606 5.10177 5.12336 5.26020 5.32981 5.37764 5.39667 5.45894 5.47843 5.56346 5.58207 5.69276 5.80390 5.96885 6.07295 6.33723 6.47747 6.79621 7.12383 7.24779 7.49479 7.56360 8.97216 Molecular weight = 334.22amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.004185 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.182272 B = 6689.305537 C = 8052.086799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 N -0.639 5.639 4 C 0.558 3.442 5 N -0.633 5.633 6 C 0.672 3.328 7 N -0.676 5.676 8 C 0.187 3.813 9 C -0.160 4.160 10 C -0.150 4.150 11 C -0.165 4.165 12 N -0.650 5.650 13 H 0.433 0.567 14 C 0.593 3.407 15 N -0.580 5.580 16 C 0.112 3.888 17 C -0.019 4.019 18 C -0.474 4.474 19 H 0.013 0.987 20 C 0.051 3.949 21 N -0.951 5.951 22 Si 0.952 3.048 23 H -0.295 1.295 24 H -0.308 1.308 25 H -0.226 1.226 26 C -0.167 4.167 27 C -0.197 4.197 28 N -0.688 5.688 29 H 0.423 0.577 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.422 0.578 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.081 0.919 47 H 0.260 0.740 48 H 0.108 0.892 49 H 0.073 0.927 50 H 0.102 0.898 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 -18.279 -3.297 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 N -0.375 5.375 4 C 0.190 3.810 5 N -0.385 5.385 6 C 0.310 3.690 7 N -0.315 5.315 8 C 0.103 3.897 9 C -0.219 4.219 10 C -0.207 4.207 11 C -0.223 4.223 12 N -0.290 5.290 13 H 0.273 0.727 14 C 0.226 3.774 15 N -0.312 5.312 16 C -0.018 4.018 17 C -0.020 4.020 18 C -0.511 4.511 19 H 0.031 0.969 20 C -0.147 4.147 21 N -0.591 5.591 22 Si 0.780 3.220 23 H -0.222 1.222 24 H -0.236 1.236 25 H -0.148 1.148 26 C -0.204 4.204 27 C -0.234 4.234 28 N -0.336 5.336 29 H 0.265 0.735 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.099 0.901 47 H 0.069 0.931 48 H 0.126 0.874 49 H 0.092 0.908 50 H 0.120 0.880 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.108 -18.429 -3.749 19.773 hybrid contribution 0.457 1.399 0.957 1.755 sum 6.565 -17.030 -2.793 18.464 Atomic orbital electron populations 1.21676 0.95230 1.01683 1.00480 1.21614 0.94999 0.88386 1.01066 1.72576 1.21824 1.18866 1.24221 1.20078 0.90184 0.81464 0.89298 1.69485 1.30246 1.31923 1.06827 1.19237 0.83512 0.78387 0.87902 1.44548 1.56671 1.09928 1.20341 1.20509 0.94207 0.77349 0.97616 1.22216 1.00629 1.01186 0.97828 1.22082 1.02453 1.01147 0.95047 1.22280 0.94653 1.02702 1.02657 1.41975 1.53594 1.09009 1.24395 0.72695 1.18778 0.87209 0.88241 0.83174 1.72188 1.30603 0.97906 1.30523 1.21336 0.97246 0.91986 0.91253 1.19443 0.99304 0.87223 0.96065 1.20072 0.95320 1.45828 0.89900 0.96872 1.25487 1.01221 0.93676 0.94318 1.70091 1.39635 1.50231 0.99161 0.85720 0.81468 0.76520 0.78280 1.22225 1.23582 1.14844 1.22931 0.95775 1.04161 0.97569 1.23060 0.96911 1.01019 1.02384 1.43616 1.52376 1.12490 1.25084 0.73451 0.95233 0.93387 0.90334 0.91889 0.91858 0.73900 0.92427 0.90248 0.91861 0.91560 0.88903 0.90680 0.91557 0.90023 0.94041 0.94516 0.90137 0.93136 0.87391 0.90795 0.87972 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.07 2.06 7.05 86.38 0.61 2.67 16 3 N -0.64 -22.85 10.66 -350.56 -3.74 -26.58 16 4 C 0.56 19.91 8.45 261.20 2.21 22.12 16 5 N -0.63 -19.33 3.86 -199.62 -0.77 -20.10 16 6 C 0.67 18.41 7.93 260.69 2.07 20.48 16 7 N -0.68 -12.65 5.17 -309.43 -1.60 -14.25 16 8 C 0.19 2.95 1.06 3.61 0.00 2.95 16 9 C -0.16 -2.61 8.45 71.98 0.61 -2.00 16 10 C -0.15 -1.41 8.59 71.98 0.62 -0.79 16 11 C -0.16 -3.20 8.31 71.98 0.60 -2.60 16 12 N -0.65 -20.18 5.47 -197.75 -1.08 -21.26 16 13 H 0.43 12.07 8.88 -92.71 -0.82 11.25 16 14 C 0.59 22.25 8.54 260.00 2.22 24.48 16 15 N -0.58 -23.94 8.13 -348.42 -2.83 -26.77 16 16 C 0.11 4.46 6.32 86.38 0.55 5.00 16 17 C -0.02 -0.86 1.40 -52.90 -0.07 -0.93 16 18 C -0.47 -26.95 8.67 25.60 0.22 -26.73 16 19 H 0.01 0.86 8.06 -2.91 -0.02 0.84 16 20 C 0.05 2.90 5.25 84.65 0.44 3.34 16 21 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 22 Si 0.95 46.22 23.79 68.60 1.63 47.85 16 23 H -0.29 -14.24 6.91 99.48 0.69 -13.55 16 24 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 25 H -0.23 -10.25 6.46 99.48 0.64 -9.60 16 26 C -0.17 -6.52 9.95 30.60 0.30 -6.21 16 27 C -0.20 -8.04 7.31 30.62 0.22 -7.82 16 28 N -0.69 -25.14 5.41 -198.52 -1.07 -26.22 16 29 H 0.42 15.28 6.30 -92.70 -0.58 14.69 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.82 5.20 -2.39 -0.01 1.81 16 35 H 0.42 5.81 8.53 -92.70 -0.79 5.02 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.44 5.53 -2.39 -0.01 1.42 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 1.70 4.97 -2.39 -0.01 1.69 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.04 1.36 5.44 -2.39 -0.01 1.35 16 46 H 0.08 2.85 7.88 -2.39 -0.02 2.83 16 47 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 48 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 49 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 50 H 0.10 3.58 8.04 -2.39 -0.02 3.56 16 51 H 0.07 2.98 6.50 -2.39 -0.02 2.96 16 Total: -1.00 -73.27 393.95 0.87 -72.40 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -1.31 Total: 42.04 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 11.34 Total: 31.16 kcal Atomic # 7 Polarization: -182.66 SS G_CDS: -10.79 Total: -193.46 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.63 Total: 47.85 kcal Total: -73.27 0.87 -72.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343042733.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.322 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds