Wall clock time and date at job start Tue Mar 31 2020 19:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99688 * 2 1 4 4 H 1.48501 * 109.47139 * 269.99687 * 3 2 1 5 5 H 1.48502 * 109.47321 * 29.99604 * 3 2 1 6 6 H 1.48501 * 109.47375 * 149.99461 * 3 2 1 7 7 C 1.38943 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99956 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00285 * 180.02562 * 7 2 1 10 10 C 1.34772 * 120.00270 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99869 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00219 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47212 * 180.02562 * 12 10 9 14 14 S 1.65602 * 119.99612 * 164.72359 * 13 12 10 15 15 O 1.42104 * 106.40175 * 178.81816 * 14 13 12 16 16 O 1.42095 * 106.40656 * 311.73868 * 14 13 12 17 17 C 1.76203 * 107.21635 * 65.28001 * 14 13 12 18 18 C 1.33391 * 125.20116 * 89.72101 * 17 14 13 19 19 C 1.38422 * 114.91918 * 179.79720 * 18 17 14 20 20 C 1.33396 * 114.91892 * 0.48937 * 19 18 17 21 21 N 1.48041 * 125.20234 * 179.77494 * 20 19 18 22 22 O 1.21803 * 119.99650 * 359.97438 * 21 20 19 23 23 O 1.21796 * 120.00064 * 179.97438 * 21 20 19 24 24 S 1.75876 * 125.20154 * 270.02133 * 17 14 13 25 25 H 0.96999 * 120.00967 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00002 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47013 * 60.00525 * 12 10 9 28 28 H 1.08999 * 109.47128 * 300.00738 * 12 10 9 29 29 H 0.97001 * 120.00384 * 345.00836 * 13 12 10 30 30 H 1.08003 * 122.54079 * 359.97184 * 18 17 14 31 31 H 1.07996 * 122.54352 * 180.23420 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3703 0.0021 11 8 3.4474 -3.4208 0.0021 12 6 5.5608 -2.3703 0.0033 13 7 6.0492 -3.7515 0.0037 14 16 7.6299 -4.0708 -0.3730 15 8 7.7936 -5.4777 -0.2578 16 8 7.9118 -3.3507 -1.5651 17 6 8.6232 -3.3492 0.8909 18 6 9.0008 -3.9601 2.0150 19 6 9.7849 -3.1940 2.8601 20 6 10.0356 -1.9574 2.4270 21 7 10.8421 -0.9475 3.1490 22 8 11.3362 -1.2209 4.2282 23 8 11.0115 0.1568 2.6639 24 16 9.2623 -1.7108 0.8667 25 1 -0.4851 0.8400 -0.0004 26 1 3.8649 -0.3631 0.0014 27 1 5.9234 -1.8561 0.8933 28 1 5.9249 -1.8567 -0.8866 29 1 5.4458 -4.4793 0.2205 30 1 8.7185 -4.9765 2.2467 31 1 10.1616 -3.5676 3.8007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352533783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:36 Heat of formation + Delta-G solvation = -60.537218 kcal Electronic energy + Delta-G solvation = -23496.472943 eV Core-core repulsion = 19422.258563 eV Total energy + Delta-G solvation = -4074.214381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 335.017 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.61020 -38.91324 -38.80966 -37.59836 -37.07218 -36.29535 -35.02097 -33.98134 -31.90417 -31.73204 -27.63550 -27.46903 -24.44445 -24.32550 -21.55431 -20.95389 -19.86314 -19.58359 -18.94038 -18.87023 -18.15617 -17.89968 -17.48973 -16.82885 -16.30645 -15.74983 -15.23707 -15.07269 -14.75228 -14.63357 -14.21934 -13.56455 -13.35054 -12.87716 -12.72872 -12.59646 -12.52456 -12.43019 -12.37479 -12.16464 -12.05236 -11.91648 -11.72351 -11.68884 -11.33747 -10.74295 -10.61873 -10.15585 -9.89428 -9.78229 -9.56096 -8.90548 -8.41051 -6.49565 -4.03085 -1.23017 -0.27442 -0.03660 0.38504 0.57987 0.98235 1.46810 2.56023 2.89295 2.95327 3.05286 3.23036 3.41248 3.91838 3.94527 3.97378 4.26429 4.39171 4.60125 4.79114 4.95505 5.00722 5.11497 5.32861 5.41760 5.63714 5.74671 6.84294 7.00318 7.34225 7.90358 8.34099 8.72203 9.18866 9.51033 10.62372 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003680 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.385955 B = 7607.639538 C = 9233.960277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.047 3.953 3 Si 0.878 3.122 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.312 4.312 8 H 0.123 0.877 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.570 6.570 12 C 0.096 3.904 13 N -1.086 6.086 14 S 2.719 3.281 15 O -0.936 6.936 16 O -0.938 6.938 17 C -0.762 4.762 18 C -0.005 4.005 19 C -0.062 4.062 20 C -0.153 4.153 21 N 0.053 4.947 22 O -0.130 6.130 23 O -0.144 6.144 24 S 0.371 5.629 25 H 0.277 0.723 26 H 0.374 0.626 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.434 0.566 30 H 0.181 0.819 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.930 -3.258 4.315 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.158 4.158 3 Si 0.704 3.296 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.441 4.441 8 H 0.140 0.860 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.453 6.453 12 C -0.035 4.035 13 N -0.854 5.854 14 S 2.799 3.201 15 O -0.926 6.926 16 O -0.928 6.928 17 C -0.961 4.961 18 C -0.040 4.040 19 C -0.099 4.099 20 C -0.356 4.356 21 N 0.577 4.423 22 O -0.351 6.351 23 O -0.360 6.360 24 S 0.641 5.359 25 H 0.087 0.913 26 H 0.207 0.793 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.275 0.725 30 H 0.198 0.802 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 20.260 -3.302 2.158 20.640 hybrid contribution 0.760 0.595 2.093 2.305 sum 21.019 -2.707 4.251 21.615 Atomic orbital electron populations 1.69608 1.05731 1.27949 1.47661 1.25070 0.95528 0.98173 0.97022 0.86694 0.79824 0.83822 0.79243 1.19219 1.19890 1.19345 1.19447 0.78825 0.96884 1.48936 0.85968 1.42140 1.07810 1.06010 1.65350 1.19314 0.87396 0.85006 0.85650 1.90566 1.68617 1.30857 1.55274 1.21099 0.97154 0.82142 1.03072 1.55059 1.27046 1.15398 1.87853 1.01647 0.72075 0.73428 0.72951 1.93640 1.85267 1.27470 1.86198 1.93648 1.84165 1.74441 1.40538 1.37130 1.24696 1.10945 1.23342 1.19909 0.92908 1.01711 0.89467 1.20604 0.96316 0.90548 1.02465 1.26780 1.09662 0.95818 1.03319 1.42548 0.98895 1.00623 1.00283 1.94593 1.48776 1.84880 1.06811 1.94629 1.64200 1.06929 1.70288 1.84824 1.39889 1.04205 1.06937 0.91255 0.79302 0.90093 0.88189 0.72519 0.80157 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.07 13.96 55.50 0.77 -23.29 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 17.99 27.74 -169.99 -4.71 13.27 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -4.88 6.52 56.52 0.37 -4.52 16 7 C -0.31 -8.21 10.16 -14.93 -0.15 -8.37 16 8 H 0.12 3.69 7.39 -52.48 -0.39 3.30 16 9 N -0.58 -12.37 5.09 -10.96 -0.06 -12.43 16 10 C 0.44 8.84 7.85 -10.99 -0.09 8.75 16 11 O -0.57 -13.56 15.30 5.54 0.08 -13.48 16 12 C 0.10 1.30 6.71 -5.19 -0.03 1.27 16 13 N -1.09 -13.54 5.93 -11.66 -0.07 -13.61 16 14 S 2.72 30.13 5.88 -107.50 -0.63 29.50 16 15 O -0.94 -11.92 17.80 -57.17 -1.02 -12.94 16 16 O -0.94 -12.48 17.37 -57.17 -0.99 -13.47 16 17 C -0.76 -6.73 6.55 29.04 0.19 -6.54 16 18 C -0.01 -0.04 9.84 -41.21 -0.41 -0.44 16 19 C -0.06 -0.44 9.81 -41.21 -0.40 -0.84 16 20 C -0.15 -1.42 7.50 -11.31 -0.08 -1.51 16 21 N 0.05 0.58 4.46 33.44 0.15 0.73 16 22 O -0.13 -1.47 18.94 -29.46 -0.56 -2.03 16 23 O -0.14 -1.73 19.08 -29.46 -0.56 -2.30 16 24 S 0.37 3.31 23.01 -107.50 -2.47 0.84 16 25 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.37 6.88 5.76 -40.82 -0.24 6.65 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.17 7.74 -51.93 -0.40 0.77 16 29 H 0.43 5.68 7.70 -34.47 -0.27 5.41 16 30 H 0.18 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.18 0.83 8.01 -52.49 -0.42 0.41 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -33.61 320.32 -8.04 -41.65 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -1.72 Total: 9.29 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.07 Total: -6.57 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.80 Total: -48.59 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -3.05 Total: -44.21 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -4.71 Total: 13.27 kcal Atomic # 16 Polarization: 33.44 SS G_CDS: -3.11 Total: 30.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.61 -8.04 -41.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352533783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.886 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds