Wall clock time and date at job start Tue Mar 31 2020 19:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99688 * 2 1 4 4 H 1.48501 * 109.47139 * 269.99687 * 3 2 1 5 5 H 1.48502 * 109.47321 * 29.99604 * 3 2 1 6 6 H 1.48501 * 109.47375 * 149.99461 * 3 2 1 7 7 C 1.38943 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99956 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00285 * 180.02562 * 7 2 1 10 10 C 1.34772 * 120.00270 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99869 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00219 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47212 * 180.02562 * 12 10 9 14 14 S 1.65602 * 119.99612 * 164.72359 * 13 12 10 15 15 O 1.42104 * 106.40175 * 178.81816 * 14 13 12 16 16 O 1.42095 * 106.40656 * 311.73868 * 14 13 12 17 17 C 1.76203 * 107.21635 * 65.28001 * 14 13 12 18 18 C 1.33391 * 125.20116 * 89.72101 * 17 14 13 19 19 C 1.38422 * 114.91918 * 179.79720 * 18 17 14 20 20 C 1.33396 * 114.91892 * 0.48937 * 19 18 17 21 21 N 1.48041 * 125.20234 * 179.77494 * 20 19 18 22 22 O 1.21803 * 119.99650 * 359.97438 * 21 20 19 23 23 O 1.21796 * 120.00064 * 179.97438 * 21 20 19 24 24 S 1.75876 * 125.20154 * 270.02133 * 17 14 13 25 25 H 0.96999 * 120.00967 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00002 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47013 * 60.00525 * 12 10 9 28 28 H 1.08999 * 109.47128 * 300.00738 * 12 10 9 29 29 H 0.97001 * 120.00384 * 345.00836 * 13 12 10 30 30 H 1.08003 * 122.54079 * 359.97184 * 18 17 14 31 31 H 1.07996 * 122.54352 * 180.23420 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3703 0.0021 11 8 3.4474 -3.4208 0.0021 12 6 5.5608 -2.3703 0.0033 13 7 6.0492 -3.7515 0.0037 14 16 7.6299 -4.0708 -0.3730 15 8 7.7936 -5.4777 -0.2578 16 8 7.9118 -3.3507 -1.5651 17 6 8.6232 -3.3492 0.8909 18 6 9.0008 -3.9601 2.0150 19 6 9.7849 -3.1940 2.8601 20 6 10.0356 -1.9574 2.4270 21 7 10.8421 -0.9475 3.1490 22 8 11.3362 -1.2209 4.2282 23 8 11.0115 0.1568 2.6639 24 16 9.2623 -1.7108 0.8667 25 1 -0.4851 0.8400 -0.0004 26 1 3.8649 -0.3631 0.0014 27 1 5.9234 -1.8561 0.8933 28 1 5.9249 -1.8567 -0.8866 29 1 5.4458 -4.4793 0.2205 30 1 8.7185 -4.9765 2.2467 31 1 10.1616 -3.5676 3.8007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352533783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:35 Heat of formation + Delta-G solvation = -88.425876 kcal Electronic energy + Delta-G solvation = -23497.682286 eV Core-core repulsion = 19422.258563 eV Total energy + Delta-G solvation = -4075.423724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 335.017 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.39851 -40.45325 -39.55085 -38.55561 -37.88698 -37.25625 -36.43957 -35.53672 -33.81210 -32.42892 -29.03533 -28.20454 -26.03871 -25.12221 -22.26824 -21.69854 -21.50894 -20.60160 -20.43690 -19.75402 -19.01364 -18.91279 -18.27273 -17.63473 -17.36761 -17.29625 -16.67328 -16.28185 -15.94651 -15.45617 -15.02129 -14.88737 -14.42891 -14.28065 -14.11845 -14.05477 -13.50312 -13.42136 -13.32358 -13.16286 -12.97862 -12.96364 -12.74520 -12.53906 -12.42847 -12.41250 -11.99073 -11.56243 -11.31089 -10.89966 -10.58792 -10.30533 -10.17377 -8.43757 -6.06293 -1.94513 -1.10315 -0.78021 -0.37793 -0.07494 0.27395 0.85923 1.31003 1.36071 1.45226 1.66835 1.82189 2.22143 2.37833 2.76288 3.11903 3.16872 3.35489 3.70681 3.79885 4.00775 4.22780 4.30072 4.31924 4.52753 4.59992 4.84852 5.50078 5.76790 5.93057 6.14903 6.51273 6.81240 7.31067 7.82211 8.72818 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003680 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.385955 B = 7607.639538 C = 9233.960277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.956 3.044 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.224 1.224 7 C -0.332 4.332 8 H 0.061 0.939 9 N -0.580 5.580 10 C 0.447 3.553 11 O -0.613 6.613 12 C 0.100 3.900 13 N -1.094 6.094 14 S 2.744 3.256 15 O -0.952 6.952 16 O -0.961 6.961 17 C -0.767 4.767 18 C 0.010 3.990 19 C -0.044 4.044 20 C -0.166 4.166 21 N 0.053 4.947 22 O -0.129 6.129 23 O -0.176 6.176 24 S 0.365 5.635 25 H 0.280 0.720 26 H 0.393 0.607 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.431 0.569 30 H 0.209 0.791 31 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.931 -2.556 5.250 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.209 4.209 3 Si 0.776 3.224 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.147 1.147 7 C -0.461 4.461 8 H 0.079 0.921 9 N -0.221 5.221 10 C 0.233 3.767 11 O -0.498 6.498 12 C -0.030 4.030 13 N -0.859 5.859 14 S 2.827 3.173 15 O -0.943 6.943 16 O -0.951 6.951 17 C -0.969 4.969 18 C -0.025 4.025 19 C -0.082 4.082 20 C -0.369 4.369 21 N 0.574 4.426 22 O -0.352 6.352 23 O -0.385 6.385 24 S 0.636 5.364 25 H 0.090 0.910 26 H 0.230 0.770 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.271 0.729 30 H 0.226 0.774 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 23.280 -2.572 3.037 23.618 hybrid contribution -0.137 0.135 1.860 1.870 sum 23.144 -2.437 4.897 23.781 Atomic orbital electron populations 1.69785 1.08197 1.29425 1.49437 1.26086 0.96389 1.02680 0.95745 0.85494 0.79885 0.76907 0.80140 1.18110 1.20245 1.14716 1.19018 0.81190 0.95149 1.50724 0.92056 1.41950 1.06043 1.07562 1.66544 1.20499 0.90186 0.83740 0.82239 1.90555 1.70673 1.32531 1.56025 1.21215 0.91632 0.83554 1.06585 1.55100 1.27720 1.14846 1.88257 1.00637 0.71354 0.72692 0.72585 1.93620 1.85371 1.28671 1.86598 1.93619 1.84322 1.74776 1.42418 1.36720 1.25334 1.11352 1.23529 1.20307 0.91309 1.02663 0.88231 1.20975 0.94744 0.89374 1.03104 1.26855 1.10345 0.96108 1.03598 1.42745 0.98833 1.00816 1.00242 1.94574 1.48704 1.84833 1.07070 1.94632 1.65407 1.07878 1.70620 1.84902 1.40410 1.04089 1.07032 0.91015 0.77043 0.85647 0.85528 0.72912 0.77372 0.77651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.42 13.96 21.66 0.30 -53.12 16 2 C -0.01 -0.48 5.50 84.92 0.47 -0.02 16 3 Si 0.96 35.89 27.74 68.60 1.90 37.79 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.22 -6.76 6.52 99.48 0.65 -6.11 16 7 C -0.33 -18.04 10.16 84.04 0.85 -17.18 16 8 H 0.06 4.00 7.39 -2.91 -0.02 3.97 16 9 N -0.58 -24.44 5.09 -306.98 -1.56 -26.00 16 10 C 0.45 17.46 7.85 87.66 0.69 18.15 16 11 O -0.61 -29.77 15.30 -3.09 -0.05 -29.82 16 12 C 0.10 2.41 6.71 85.63 0.57 2.99 16 13 N -1.09 -24.79 5.93 -190.79 -1.13 -25.92 16 14 S 2.74 53.93 5.88 -56.49 -0.33 53.60 16 15 O -0.95 -22.15 17.80 -128.00 -2.28 -24.43 16 16 O -0.96 -23.45 17.37 -128.00 -2.22 -25.67 16 17 C -0.77 -10.92 6.55 66.72 0.44 -10.49 16 18 C 0.01 0.10 9.84 21.22 0.21 0.31 16 19 C -0.04 -0.44 9.81 21.22 0.21 -0.23 16 20 C -0.17 -2.58 7.50 80.82 0.61 -1.97 16 21 N 0.05 1.07 4.46 -48.12 -0.21 0.86 16 22 O -0.13 -2.62 18.94 18.88 0.36 -2.26 16 23 O -0.18 -4.03 19.08 18.89 0.36 -3.67 16 24 S 0.37 5.47 23.01 -56.49 -1.30 4.17 16 25 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 26 H 0.39 13.28 5.76 -92.71 -0.53 12.74 16 27 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.13 2.47 7.74 -2.39 -0.02 2.45 16 29 H 0.43 10.75 7.70 -96.74 -0.75 10.00 16 30 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.21 0.90 8.01 -2.91 -0.02 0.88 16 Total: -1.00 -78.31 320.32 -2.22 -80.52 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.09 Total: 22.41 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.04 Total: -8.45 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -2.61 Total: -104.19 kcal Atomic # 8 Polarization: -82.02 SS G_CDS: -3.83 Total: -85.85 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 1.90 Total: 37.79 kcal Atomic # 16 Polarization: 59.40 SS G_CDS: -1.63 Total: 57.77 kcal Total: -78.31 -2.22 -80.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352533783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.904 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds