Wall clock time and date at job start Tue Mar 31 2020 18:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48504 * 109.47092 * 240.00087 * 3 2 1 5 5 H 1.48502 * 109.47428 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47441 * 119.99929 * 3 2 1 7 7 C 1.37878 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99863 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47406 * 180.02562 * 9 7 2 11 11 C 1.42901 * 114.00194 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46999 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.46992 * 64.99670 * 12 11 10 14 14 C 1.35853 * 119.62117 * 90.00117 * 13 12 11 15 15 C 1.35384 * 120.70422 * 179.97438 * 14 13 12 16 16 Br 1.89104 * 120.02556 * 180.02562 * 15 14 13 17 17 C 1.40272 * 119.95077 * 359.97438 * 15 14 13 18 18 C 1.36449 * 119.25808 * 359.97438 * 17 15 14 19 19 Cl 1.73600 * 120.34530 * 180.02562 * 18 17 15 20 20 C 1.34658 * 119.62293 * 269.72248 * 13 12 11 21 21 O 1.22072 * 119.98737 * 0.02562 * 20 13 12 22 22 H 0.97004 * 120.00246 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47095 * 60.00010 * 9 7 2 24 24 H 1.08996 * 109.47468 * 300.00433 * 9 7 2 25 25 H 1.08992 * 109.47320 * 59.99819 * 11 10 9 26 26 H 1.08998 * 109.46759 * 299.99542 * 11 10 9 27 27 H 1.09000 * 109.46884 * 305.00285 * 12 11 10 28 28 H 1.09000 * 109.46955 * 184.99601 * 12 11 10 29 29 H 1.08000 * 119.64624 * 359.97438 * 14 13 12 30 30 H 1.07992 * 120.37236 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5651 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0049 13 7 3.4051 -5.8869 1.2572 14 6 2.9957 -6.6124 2.3304 15 6 3.6792 -6.5651 3.4981 16 35 3.0926 -7.5834 4.9797 17 6 4.8233 -5.7611 3.6079 18 6 5.2336 -5.0340 2.5286 19 17 6.6460 -4.0301 2.6329 20 6 4.5021 -5.1092 1.3297 21 8 4.8600 -4.4669 0.3553 22 1 -0.4851 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8880 24 1 0.6247 -2.5563 0.8919 25 1 0.9452 -4.9830 -0.8868 26 1 0.9447 -4.9819 0.8931 27 1 3.3222 -5.7962 -0.8365 28 1 2.1821 -6.9376 -0.0842 29 1 2.1157 -7.2334 2.2512 30 1 5.3734 -5.7180 4.5363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563128982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:47 Heat of formation + Delta-G solvation = -70.971515 kcal Electronic energy + Delta-G solvation = -18591.412548 eV Core-core repulsion = 15265.937853 eV Total energy + Delta-G solvation = -3325.474695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 334.971 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.53399 -38.71793 -38.23227 -37.70110 -35.82637 -34.86533 -32.59677 -31.30753 -29.71344 -29.01177 -25.76813 -24.71969 -24.27126 -22.99377 -19.04370 -18.82390 -18.58533 -17.66115 -17.31952 -17.17811 -16.58351 -16.37535 -15.76496 -15.55542 -15.12573 -14.17994 -13.95892 -13.78918 -13.69180 -13.65908 -13.28601 -13.14444 -12.82518 -12.72888 -12.52748 -12.16071 -12.13982 -11.54771 -11.36496 -11.32533 -11.17196 -10.90562 -10.72880 -10.26237 -9.00435 -8.36380 -6.47097 -0.49012 0.30380 0.48242 1.04246 1.34191 1.38373 1.47076 1.69212 2.28218 2.32122 2.97113 3.10418 3.41373 3.53567 3.68731 3.97802 4.04146 4.24990 4.27298 4.48419 4.53425 4.68096 4.72216 4.82865 5.13568 5.22164 5.51029 5.73092 5.93641 6.50237 6.80228 6.80976 7.24602 8.75267 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.003813 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.713456 B = 7341.279123 C = 7944.668092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.046 0.954 9 C 0.214 3.786 10 O -0.403 6.403 11 C 0.027 3.973 12 C 0.099 3.901 13 N -0.481 5.481 14 C 0.199 3.801 15 C -0.220 4.220 16 Br 0.004 6.996 17 C 0.031 3.969 18 C -0.189 4.189 19 Cl -0.042 7.042 20 C 0.511 3.489 21 O -0.545 6.545 22 H 0.272 0.728 23 H -0.010 1.010 24 H -0.014 1.014 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.174 0.826 29 H 0.222 0.778 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 -22.417 11.004 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.065 0.935 9 C 0.139 3.861 10 O -0.323 6.323 11 C -0.050 4.050 12 C -0.021 4.021 13 N -0.189 5.189 14 C 0.067 3.933 15 C -0.304 4.304 16 Br 0.087 6.913 17 C 0.008 3.992 18 C -0.221 4.221 19 Cl -0.013 7.013 20 C 0.310 3.690 21 O -0.425 6.425 22 H 0.081 0.919 23 H 0.008 0.992 24 H 0.004 0.996 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.191 0.809 29 H 0.239 0.761 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.607 -22.113 10.830 25.050 hybrid contribution 0.296 1.457 -0.378 1.534 sum 4.903 -20.655 10.452 23.663 Atomic orbital electron populations 1.70022 1.07329 1.28670 1.50422 1.25800 0.95941 1.02852 0.93921 0.85399 0.78355 0.77529 0.79165 1.19410 1.19112 1.19558 1.21278 0.93511 0.91425 1.52314 0.93531 1.19744 0.88316 0.84527 0.93479 1.88026 1.34873 1.14187 1.95223 1.23101 0.95521 0.84514 1.01881 1.22493 0.93877 1.01317 0.84423 1.45583 1.23422 1.36126 1.13795 1.22748 0.96985 0.89609 0.83982 1.20830 1.03045 1.10610 0.95955 1.96758 1.88873 1.68562 1.37075 1.21450 0.92315 0.87849 0.97586 1.21506 0.97621 1.06355 0.96607 1.98343 1.36882 1.68127 1.97965 1.16885 0.81594 0.80913 0.89567 1.91049 1.68682 1.43565 1.39212 0.91926 0.99180 0.99609 0.90607 0.92554 0.88857 0.80877 0.76116 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 2 C 0.01 0.83 5.46 84.66 0.46 1.29 16 3 Si 0.97 46.72 29.54 68.60 2.03 48.74 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.55 -34.39 9.43 25.60 0.24 -34.15 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.21 12.21 5.69 71.24 0.41 12.62 16 10 O -0.40 -19.92 9.10 -141.43 -1.29 -21.21 16 11 C 0.03 0.87 6.28 71.98 0.45 1.32 16 12 C 0.10 2.27 5.80 86.38 0.50 2.77 16 13 N -0.48 -12.46 2.57 -650.73 -1.67 -14.13 16 14 C 0.20 3.40 10.00 83.41 0.83 4.23 16 15 C -0.22 -4.00 6.19 22.11 0.14 -3.87 16 16 Br 0.00 0.05 33.70 -20.37 -0.69 -0.63 16 17 C 0.03 0.70 9.64 22.35 0.22 0.91 16 18 C -0.19 -5.86 6.34 22.44 0.14 -5.72 16 19 Cl -0.04 -1.35 28.56 -2.72 -0.08 -1.43 16 20 C 0.51 18.24 7.03 84.85 0.60 18.84 16 21 O -0.54 -25.05 15.34 2.00 0.03 -25.01 16 22 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.01 -0.56 8.14 -2.38 -0.02 -0.57 16 24 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 2.60 7.38 -2.39 -0.02 2.58 16 28 H 0.17 1.56 8.01 -2.39 -0.02 1.55 16 29 H 0.22 1.51 8.04 -2.91 -0.02 1.49 16 30 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -81.92 305.44 3.77 -78.15 By element: Atomic # 1 Polarization: -7.91 SS G_CDS: 1.17 Total: -6.74 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 3.99 Total: -1.76 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -1.39 Total: -70.11 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -1.26 Total: -46.22 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.63 kcal Total: -81.92 3.77 -78.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563128982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.177 kcal (2) G-P(sol) polarization free energy of solvation -81.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds