Wall clock time and date at job start Tue Mar 31 2020 18:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00248 * 2 1 4 4 C 1.50703 * 109.46753 * 66.04584 * 3 2 1 5 5 H 1.07995 * 120.00408 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99925 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00043 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00012 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47217 * 269.99702 * 8 6 4 10 10 H 1.48507 * 109.47024 * 29.99682 * 8 6 4 11 11 H 1.48499 * 109.47296 * 149.99415 * 8 6 4 12 12 C 1.46901 * 111.00048 * 236.04744 * 2 1 3 13 13 C 1.53001 * 109.47384 * 199.76858 * 12 2 1 14 14 H 1.09000 * 109.46760 * 302.15553 * 13 12 2 15 15 O 1.42895 * 109.47380 * 62.15613 * 13 12 2 16 16 C 1.53006 * 109.47183 * 182.16007 * 13 12 2 17 17 N 1.46900 * 109.47081 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00075 * 179.97438 * 17 16 13 19 19 C 1.52999 * 109.47330 * 179.97438 * 18 17 16 20 20 H 1.08997 * 108.86890 * 56.39946 * 19 18 17 21 21 C 1.45547 * 108.89563 * 175.00063 * 19 18 17 22 22 C 1.54242 * 112.40318 * 182.69284 * 21 19 18 23 23 C 1.50474 * 108.51978 * 280.00354 * 22 21 19 24 24 C 1.54065 * 112.49490 * 94.15632 * 23 22 21 25 25 C 1.54065 * 112.81821 * 318.28747 * 24 23 22 26 26 F 1.39895 * 108.87852 * 79.05902 * 25 24 23 27 27 F 1.39900 * 108.87970 * 197.60336 * 25 24 23 28 28 C 1.50478 * 112.49711 * 318.27989 * 25 24 23 29 29 H 1.08998 * 109.47253 * 54.96442 * 1 2 3 30 30 H 1.09003 * 109.47101 * 174.96153 * 1 2 3 31 31 H 1.09001 * 109.47068 * 294.96135 * 1 2 3 32 32 H 1.08994 * 109.47236 * 306.04949 * 3 2 1 33 33 H 1.09000 * 109.47456 * 186.04834 * 3 2 1 34 34 H 0.97005 * 120.00577 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47046 * 319.77012 * 12 2 1 36 36 H 1.08996 * 109.47151 * 79.76734 * 12 2 1 37 37 H 0.96704 * 113.99860 * 60.00048 * 15 13 12 38 38 H 1.09001 * 109.46597 * 299.99909 * 16 13 12 39 39 H 1.09002 * 109.46997 * 59.99653 * 16 13 12 40 40 H 1.00896 * 110.99653 * 56.04253 * 17 16 13 41 41 H 1.09001 * 109.47328 * 300.00482 * 18 17 16 42 42 H 1.09003 * 109.47195 * 59.99667 * 18 17 16 43 43 H 1.08994 * 108.89417 * 303.44175 * 21 19 18 44 44 H 1.08997 * 108.89199 * 61.93912 * 21 19 18 45 45 H 1.08995 * 109.62987 * 39.71623 * 22 21 19 46 46 H 1.09005 * 109.62452 * 160.29725 * 22 21 19 47 47 H 1.08995 * 108.87722 * 214.93685 * 23 22 21 48 48 H 1.09002 * 108.87655 * 333.48357 * 23 22 21 49 49 H 1.09002 * 108.81622 * 79.14756 * 24 23 22 50 50 H 1.09005 * 108.81782 * 197.53287 * 24 23 22 51 51 H 1.09002 * 109.63130 * 334.44010 * 28 25 24 52 52 H 1.08995 * 109.62831 * 213.86034 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0747 1.5112 2.0488 6 6 2.0277 3.3490 1.5290 7 7 1.7144 3.9388 2.6619 8 14 3.0010 4.2757 0.2315 9 1 4.4533 4.0623 0.4558 10 1 2.6296 3.7759 -1.1167 11 1 2.6936 5.7256 0.3239 12 6 1.9955 -0.7660 -1.1376 13 6 3.4456 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6749 15 8 3.4926 -2.0097 0.2950 16 6 4.0110 -1.9161 -2.0637 17 7 5.4035 -2.2986 -1.7941 18 6 5.9802 -3.0240 -2.9337 19 6 7.4279 -3.4042 -2.6165 20 1 7.4457 -3.9860 -1.6950 21 6 7.9486 -4.2232 -3.7012 22 6 9.3877 -4.7089 -3.4324 23 6 10.3387 -3.5893 -3.7581 24 6 10.6988 -2.7433 -2.5219 25 6 9.4837 -2.4575 -1.6189 26 9 9.2236 -3.5891 -0.8386 27 9 9.7902 -1.3860 -0.7733 28 6 8.2485 -2.1151 -2.4071 29 1 -0.3634 0.5899 -0.8414 30 1 -0.3633 -1.0237 -0.0903 31 1 -0.3633 0.4337 0.9317 32 1 1.5612 1.9273 -0.8308 33 1 3.0798 1.3443 -0.1083 34 1 1.9890 4.8549 2.8240 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0380 37 1 2.9843 -2.8273 0.2040 38 1 3.4165 -2.8114 -2.2454 39 1 3.9751 -1.2716 -2.9421 40 1 5.4713 -2.8431 -0.9474 41 1 5.3996 -3.9273 -3.1209 42 1 5.9575 -2.3878 -3.8186 43 1 7.3016 -5.0908 -3.8303 44 1 7.9394 -3.6382 -4.6208 45 1 9.4913 -4.9837 -2.3827 46 1 9.6069 -5.5707 -4.0628 47 1 11.2528 -4.0128 -4.1742 48 1 9.8788 -2.9419 -4.5048 49 1 11.4521 -3.2743 -1.9399 50 1 11.1180 -1.7940 -2.8555 51 1 8.5341 -1.7017 -3.3744 52 1 7.6527 -1.3873 -1.8563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570083805.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:18 Heat of formation + Delta-G solvation = -181.260553 kcal Electronic energy + Delta-G solvation = -30326.030699 eV Core-core repulsion = 25994.579487 eV Total energy + Delta-G solvation = -4331.451211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.217 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.05075 -47.96774 -39.93199 -39.30831 -37.44875 -36.13629 -34.60146 -33.65720 -32.25438 -31.10551 -29.91020 -27.91893 -26.51976 -25.65433 -24.69987 -23.21351 -22.72511 -21.63439 -21.20393 -20.90354 -19.06443 -18.40584 -17.96811 -17.50568 -17.42097 -17.21636 -16.51916 -16.24950 -16.05148 -15.69368 -15.58343 -15.34239 -15.11110 -14.91959 -14.71942 -14.52620 -14.40429 -14.28351 -14.08057 -14.01462 -13.73568 -13.64246 -13.28214 -13.09803 -13.03773 -12.92817 -12.58813 -12.58055 -12.43680 -12.37699 -12.24492 -11.87422 -11.67878 -11.66975 -11.49616 -11.42822 -11.38573 -11.32246 -11.25495 -10.78690 -10.71660 -9.30552 -8.95749 -8.29187 -6.31969 1.31908 1.34481 1.43725 2.32891 2.87678 2.92013 3.04278 3.28506 3.35544 3.41882 3.48159 3.72060 3.90294 3.91452 4.01066 4.08358 4.16600 4.19271 4.24574 4.33420 4.39383 4.43940 4.55095 4.59127 4.63305 4.70135 4.71118 4.75712 4.80579 4.84588 4.85863 4.89315 4.96917 4.99989 5.01509 5.13299 5.18216 5.19354 5.22596 5.30075 5.35618 5.43834 5.54932 5.55618 5.96734 6.11534 6.37950 6.44483 6.65882 6.74246 7.05075 7.31260 8.87765 Molecular weight = 334.22amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.002602 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.795946 B =10758.192579 C =11955.950229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.544 5.544 3 C 0.174 3.826 4 C -0.515 4.515 5 H 0.036 0.964 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.249 1.249 11 H -0.278 1.278 12 C 0.025 3.975 13 C 0.119 3.881 14 H 0.067 0.933 15 O -0.562 6.562 16 C 0.044 3.956 17 N -0.700 5.700 18 C 0.067 3.933 19 C -0.080 4.080 20 H 0.070 0.930 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.111 4.111 24 C -0.154 4.154 25 C 0.282 3.718 26 F -0.212 7.212 27 F -0.227 7.227 28 C -0.152 4.152 29 H 0.017 0.983 30 H 0.084 0.916 31 H 0.042 0.958 32 H -0.013 1.013 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.378 0.622 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.345 0.655 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.107 0.893 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.129 -21.017 -21.433 34.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.267 5.267 3 C 0.047 3.953 4 C -0.553 4.553 5 H 0.054 0.946 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.769 3.231 9 H -0.194 1.194 10 H -0.173 1.173 11 H -0.204 1.204 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.085 0.915 15 O -0.367 6.367 16 C -0.086 4.086 17 N -0.332 5.332 18 C -0.062 4.062 19 C -0.099 4.099 20 H 0.089 0.911 21 C -0.150 4.150 22 C -0.170 4.170 23 C -0.148 4.148 24 C -0.192 4.192 25 C 0.246 3.754 26 F -0.193 7.193 27 F -0.208 7.208 28 C -0.190 4.190 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.004 0.996 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.226 0.774 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.163 0.837 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.102 0.898 50 H 0.118 0.882 51 H 0.125 0.875 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.918 -20.001 -20.843 33.477 hybrid contribution -0.871 0.224 -0.158 0.913 sum 16.048 -19.777 -21.000 33.010 Atomic orbital electron populations 1.22188 0.87268 1.01062 0.99923 1.61709 1.08025 1.14564 1.42428 1.19937 0.94859 0.86009 0.94486 1.21280 1.34715 0.97431 1.01884 0.94609 1.25865 0.97025 0.98506 0.97733 1.70050 1.48709 1.13913 1.26303 0.85741 0.79328 0.77808 0.80241 1.19368 1.17304 1.20361 1.22854 0.96956 0.98828 0.91751 1.21816 0.94033 0.92940 0.85298 0.91457 1.86673 1.74512 1.35506 1.40031 1.22456 0.88927 0.99480 0.97707 1.60309 1.18057 1.48549 1.06265 1.22080 0.93769 0.96657 0.93696 1.19982 0.94130 0.94885 1.00918 0.91143 1.20508 0.96705 0.99682 0.98140 1.21523 0.94272 0.98566 1.02617 1.21311 1.01068 0.96903 0.95524 1.22942 0.94738 1.03903 0.97616 1.21454 0.98457 0.72014 0.83461 1.92893 1.95289 1.53017 1.78085 1.92995 1.94782 1.58072 1.74942 1.22435 0.93858 1.00568 1.02103 0.96419 0.89785 0.93879 0.99559 0.95962 0.92445 0.88486 0.94161 0.77411 0.92881 0.89873 0.83658 0.93900 0.90419 0.91046 0.90527 0.91988 0.89917 0.89511 0.90233 0.89847 0.88199 0.87459 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 9.31 127.69 1.19 2.84 16 2 N -0.54 -22.64 4.59 -927.06 -4.25 -26.89 16 3 C 0.17 8.68 3.62 85.56 0.31 8.99 16 4 C -0.51 -31.15 9.13 25.60 0.23 -30.91 16 5 H 0.04 2.41 7.34 -2.91 -0.02 2.39 16 6 C 0.01 0.35 5.47 84.66 0.46 0.81 16 7 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 8 Si 0.95 45.84 27.47 68.60 1.88 47.73 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.02 0.75 4.65 86.30 0.40 1.15 16 13 C 0.12 3.51 3.31 30.60 0.10 3.61 16 14 H 0.07 2.53 6.73 -2.39 -0.02 2.51 16 15 O -0.56 -17.47 12.58 -148.98 -1.87 -19.34 16 16 C 0.04 0.91 5.39 86.31 0.47 1.37 16 17 N -0.70 -14.61 5.55 -513.89 -2.85 -17.46 16 18 C 0.07 1.00 4.99 86.30 0.43 1.43 16 19 C -0.08 -1.17 1.77 -12.65 -0.02 -1.20 16 20 H 0.07 1.29 6.40 -2.39 -0.02 1.28 16 21 C -0.11 -1.11 4.44 28.74 0.13 -0.98 16 22 C -0.13 -1.27 5.61 30.20 0.17 -1.10 16 23 C -0.11 -0.91 5.32 30.14 0.16 -0.75 16 24 C -0.15 -1.94 5.36 31.31 0.17 -1.77 16 25 C 0.28 5.52 1.97 30.14 0.06 5.58 16 26 F -0.21 -4.81 12.88 44.97 0.58 -4.24 16 27 F -0.23 -5.98 16.92 44.97 0.76 -5.22 16 28 C -0.15 -2.66 4.68 30.20 0.14 -2.51 16 29 H 0.02 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.08 2.48 7.85 -2.39 -0.02 2.46 16 31 H 0.04 1.90 7.01 -2.39 -0.02 1.88 16 32 H -0.01 -0.65 7.13 -2.39 -0.02 -0.66 16 33 H 0.02 1.12 6.03 -2.39 -0.01 1.11 16 34 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 35 H 0.10 2.27 7.75 -2.39 -0.02 2.25 16 36 H 0.04 1.17 8.00 -2.39 -0.02 1.16 16 37 H 0.38 8.27 9.05 -74.05 -0.67 7.60 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.34 7.79 8.12 -89.70 -0.73 7.06 16 41 H 0.04 0.55 8.07 -2.39 -0.02 0.53 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 0.63 8.06 -2.39 -0.02 0.61 16 44 H 0.08 0.59 7.47 -2.39 -0.02 0.57 16 45 H 0.06 0.84 5.89 -2.39 -0.01 0.82 16 46 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.08 0.52 6.63 -2.39 -0.02 0.50 16 49 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 51 H 0.11 1.42 6.97 -2.39 -0.02 1.40 16 52 H 0.08 1.99 7.08 -2.39 -0.02 1.97 16 Total: -1.00 -75.37 394.68 -1.60 -76.96 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.54 Total: 23.05 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.40 Total: -13.45 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -6.81 Total: -105.50 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.87 Total: -19.34 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 1.34 Total: -9.45 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.73 kcal Total: -75.37 -1.60 -76.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570083805.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.297 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds