Wall clock time and date at job start Tue Mar 31 2020 18:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46903 * 110.99771 * 2 1 4 4 C 1.50695 * 109.47165 * 66.04557 * 3 2 1 5 5 H 1.08000 * 120.00447 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99889 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99898 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00133 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47061 * 59.99935 * 8 6 4 10 10 H 1.48498 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47313 * 299.99964 * 8 6 4 12 12 C 1.46899 * 110.99961 * 236.04475 * 2 1 3 13 13 C 1.53004 * 109.46990 * 293.95347 * 12 2 1 14 14 H 1.08999 * 109.47056 * 60.00025 * 13 12 2 15 15 O 1.42898 * 109.47242 * 300.00424 * 13 12 2 16 16 C 1.52997 * 109.47053 * 180.02562 * 13 12 2 17 17 N 1.46897 * 109.47346 * 185.00088 * 16 13 12 18 18 C 1.46895 * 111.00259 * 180.02562 * 17 16 13 19 19 C 1.52993 * 109.47337 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.78656 * 305.48531 * 19 18 17 21 21 C 1.54248 * 109.62930 * 184.99849 * 19 18 17 22 22 C 1.45546 * 112.39985 * 160.30695 * 21 19 18 23 23 C 1.54236 * 112.40892 * 61.93871 * 22 21 19 24 24 C 1.50473 * 108.51943 * 280.00286 * 23 22 21 25 25 C 1.54076 * 112.49469 * 94.15360 * 24 23 22 26 26 F 1.39900 * 108.81077 * 79.14746 * 25 24 23 27 27 F 1.39897 * 108.81192 * 197.42334 * 25 24 23 28 28 C 1.50476 * 109.62758 * 65.96486 * 19 18 17 29 29 H 1.08989 * 109.46882 * 183.95408 * 1 2 3 30 30 H 1.08997 * 109.47146 * 303.95726 * 1 2 3 31 31 H 1.09001 * 109.46348 * 63.95606 * 1 2 3 32 32 H 1.09000 * 109.46495 * 186.04579 * 3 2 1 33 33 H 1.09005 * 109.47073 * 306.04478 * 3 2 1 34 34 H 0.97003 * 120.00001 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.46766 * 173.95632 * 12 2 1 36 36 H 1.08995 * 109.46951 * 53.95484 * 12 2 1 37 37 H 0.96711 * 113.99370 * 300.00059 * 15 13 12 38 38 H 1.09008 * 109.47032 * 64.99544 * 16 13 12 39 39 H 1.09004 * 109.47085 * 305.00210 * 16 13 12 40 40 H 1.00896 * 110.99675 * 303.95301 * 17 16 13 41 41 H 1.08998 * 109.47162 * 59.99884 * 18 17 16 42 42 H 1.09004 * 109.47053 * 300.00226 * 18 17 16 43 43 H 1.08995 * 108.89711 * 39.55439 * 21 19 18 44 44 H 1.08994 * 108.89437 * 281.05866 * 21 19 18 45 45 H 1.09003 * 108.89162 * 182.68642 * 22 21 19 46 46 H 1.08995 * 108.89582 * 301.27819 * 22 21 19 47 47 H 1.08999 * 109.62981 * 39.71090 * 23 22 21 48 48 H 1.08997 * 109.63229 * 160.29581 * 23 22 21 49 49 H 1.08998 * 108.87927 * 214.92911 * 24 23 22 50 50 H 1.09003 * 108.88056 * 333.37723 * 24 23 22 51 51 H 1.09003 * 108.87444 * 93.08210 * 28 19 18 52 52 H 1.09000 * 108.87638 * 334.64330 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5116 2.0485 6 6 2.0277 3.3492 1.5288 7 7 2.7137 4.0012 0.6157 8 14 1.5827 4.1870 3.1380 9 1 2.1734 3.4294 4.2704 10 1 2.1149 5.5733 3.1380 11 1 0.1054 4.2245 3.2846 12 6 1.9955 -0.7660 -1.1376 13 6 1.6315 -2.2427 -0.9702 14 1 0.5473 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2428 16 6 2.1803 -3.0406 -2.1547 17 7 1.7299 -4.4353 -2.0564 18 6 2.2395 -5.2335 -3.1793 19 6 1.7511 -6.6769 -3.0422 20 1 2.0290 -7.0691 -2.0639 21 6 2.3849 -7.5457 -4.1479 22 6 2.3476 -8.9650 -3.8278 23 6 0.9073 -9.4974 -3.6825 24 6 0.3967 -9.1277 -2.3162 25 6 -0.3971 -7.8072 -2.3210 26 9 -1.6877 -8.0584 -2.7991 27 9 -0.4898 -7.3318 -1.0086 28 6 0.2550 -6.7213 -3.1979 29 1 -0.3633 -1.0251 0.0709 30 1 -0.3633 0.5740 0.8524 31 1 -0.3632 0.4512 -0.9234 32 1 3.0798 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8310 34 1 2.9889 4.9171 0.7779 35 1 3.0798 -0.6611 -1.1755 36 1 1.5612 -0.3873 -2.0627 37 1 3.1653 -2.6771 0.2788 38 1 3.2699 -3.0087 -2.1407 39 1 1.8161 -2.6059 -3.0856 40 1 2.0000 -4.8410 -1.1729 41 1 3.3293 -5.2169 -3.1720 42 1 1.8761 -4.8142 -4.1176 43 1 3.4226 -7.2418 -4.2843 44 1 1.8450 -7.3798 -5.0801 45 1 2.8503 -9.5190 -4.6206 46 1 2.8795 -9.1296 -2.8908 47 1 0.2719 -9.0471 -4.4451 48 1 0.9048 -10.5817 -3.7933 49 1 -0.2500 -9.9266 -1.9534 50 1 1.2442 -9.0272 -1.6382 51 1 0.0150 -6.9202 -4.2424 52 1 -0.1572 -5.7506 -2.9221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570083809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:29 Heat of formation + Delta-G solvation = -191.021629 kcal Electronic energy + Delta-G solvation = -29849.190315 eV Core-core repulsion = 25517.315832 eV Total energy + Delta-G solvation = -4331.874483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.217 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.91537 -47.86864 -40.04650 -39.41137 -37.42238 -36.16344 -34.62199 -33.44922 -32.40864 -31.01958 -29.11923 -27.99483 -26.69783 -25.79146 -24.84802 -23.20108 -22.67893 -21.76478 -21.42754 -20.61439 -18.57252 -18.19429 -17.89578 -17.72780 -17.37546 -17.17235 -16.72526 -16.26939 -15.99711 -15.88538 -15.64325 -15.09820 -15.05400 -14.94996 -14.74992 -14.44668 -14.29156 -14.26439 -13.87509 -13.78863 -13.73375 -13.64520 -13.35656 -13.20725 -13.01177 -12.79952 -12.68430 -12.56515 -12.52348 -12.38357 -12.27592 -12.01889 -11.87944 -11.60973 -11.54653 -11.45685 -11.37719 -11.30621 -11.12775 -10.67597 -10.62080 -9.33527 -8.97193 -8.21345 -6.31200 1.40496 1.43793 1.51795 2.39736 2.80940 2.92952 3.10734 3.13806 3.39332 3.45494 3.51688 3.71364 3.94581 3.97608 4.03115 4.06085 4.12434 4.19643 4.24039 4.28188 4.34219 4.44403 4.55057 4.59518 4.67100 4.69606 4.72100 4.74822 4.83112 4.86119 4.88462 4.97891 5.04206 5.05791 5.11502 5.15265 5.16955 5.23238 5.31224 5.31467 5.35195 5.40086 5.52766 5.63933 6.02692 6.08203 6.31274 6.45377 6.63068 6.84442 6.96848 7.38291 8.89323 Molecular weight = 334.22amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.001923 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.100556 B =14556.551275 C =15145.475691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.540 5.540 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.127 3.873 14 H 0.090 0.910 15 O -0.560 6.560 16 C 0.042 3.958 17 N -0.693 5.693 18 C 0.066 3.934 19 C -0.072 4.072 20 H 0.074 0.926 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.153 4.153 25 C 0.277 3.723 26 F -0.221 7.221 27 F -0.219 7.219 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.010 0.990 32 H 0.005 0.995 33 H -0.040 1.040 34 H 0.265 0.735 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.379 0.621 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.346 0.654 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.097 0.903 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -30.156 -13.143 32.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.104 4.104 13 C 0.067 3.933 14 H 0.108 0.892 15 O -0.366 6.366 16 C -0.089 4.089 17 N -0.325 5.325 18 C -0.063 4.063 19 C -0.091 4.091 20 H 0.092 0.908 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.191 4.191 25 C 0.241 3.759 26 F -0.202 7.202 27 F -0.201 7.201 28 C -0.182 4.182 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.023 0.977 33 H -0.022 1.022 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.227 0.773 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.165 0.835 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.117 0.883 51 H 0.116 0.884 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.739 -30.197 -12.890 32.841 hybrid contribution 0.726 1.557 0.211 1.731 sum -0.013 -28.640 -12.679 31.321 Atomic orbital electron populations 1.22204 0.87991 1.00930 0.99566 1.61938 1.07852 1.14889 1.41673 1.19390 0.93659 0.83900 0.94863 1.21437 1.34878 0.97541 1.02427 0.92184 1.25921 0.95034 0.98024 1.00769 1.70073 1.39260 1.11932 1.36166 0.85431 0.78788 0.77184 0.79183 1.19355 1.20656 1.19370 1.22823 1.00254 0.95368 0.92001 1.21783 0.98422 0.89078 0.83986 0.89201 1.86576 1.26062 1.84738 1.39227 1.22461 0.98047 0.89577 0.98775 1.60341 1.64032 1.01732 1.06399 1.22032 0.97395 0.92363 0.94506 1.20818 0.92755 0.95009 1.00547 0.90763 1.20544 1.01805 0.94946 0.97710 1.20516 0.96081 0.95940 1.03049 1.21328 0.96956 1.02353 0.94518 1.22368 1.01298 0.93546 1.01877 1.22348 0.79581 0.96721 0.77202 1.92961 1.43317 1.95427 1.88525 1.92995 1.96489 1.90252 1.40328 1.22302 0.97489 0.97925 1.00453 0.90826 0.92699 0.97100 0.97673 1.02203 0.92654 0.91239 0.95006 0.77332 0.93795 0.89989 0.83480 0.93915 0.90645 0.90768 0.91164 0.90307 0.91598 0.91221 0.89320 0.89812 0.88305 0.88422 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.70 9.14 127.69 1.17 2.87 16 2 N -0.54 -23.98 4.62 -927.04 -4.28 -28.27 16 3 C 0.21 11.34 4.72 85.55 0.40 11.75 16 4 C -0.52 -30.56 8.46 25.60 0.22 -30.34 16 5 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 6 C 0.00 0.03 5.46 84.65 0.46 0.49 16 7 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 8 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 C 0.02 0.85 4.62 86.30 0.40 1.25 16 13 C 0.13 3.54 3.08 30.59 0.09 3.63 16 14 H 0.09 2.76 6.55 -2.39 -0.02 2.74 16 15 O -0.56 -16.57 12.72 -148.98 -1.90 -18.47 16 16 C 0.04 0.86 5.36 86.30 0.46 1.32 16 17 N -0.69 -13.08 5.75 -513.90 -2.96 -16.03 16 18 C 0.07 0.90 4.92 86.30 0.42 1.32 16 19 C -0.07 -0.84 2.01 -11.19 -0.02 -0.87 16 20 H 0.07 0.96 6.98 -2.39 -0.02 0.94 16 21 C -0.11 -0.83 4.68 28.74 0.13 -0.69 16 22 C -0.12 -0.72 5.26 28.74 0.15 -0.57 16 23 C -0.11 -0.87 5.61 30.20 0.17 -0.70 16 24 C -0.15 -1.78 4.75 30.14 0.14 -1.64 16 25 C 0.28 4.96 1.88 31.32 0.06 5.02 16 26 F -0.22 -4.82 17.00 44.97 0.76 -4.05 16 27 F -0.22 -5.28 17.00 44.97 0.76 -4.52 16 28 C -0.14 -2.17 4.26 30.14 0.13 -2.04 16 29 H 0.07 2.63 6.47 -2.39 -0.02 2.62 16 30 H 0.05 2.44 6.76 -2.39 -0.02 2.42 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 33 H -0.04 -2.34 8.12 -2.38 -0.02 -2.36 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 36 H 0.03 1.08 8.12 -2.39 -0.02 1.07 16 37 H 0.38 8.98 9.05 -74.05 -0.67 8.31 16 38 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.35 6.92 8.29 -89.70 -0.74 6.18 16 41 H 0.04 0.52 8.04 -2.39 -0.02 0.50 16 42 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.07 0.47 7.90 -2.39 -0.02 0.45 16 44 H 0.07 0.48 7.47 -2.39 -0.02 0.46 16 45 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.07 0.41 7.46 -2.39 -0.02 0.39 16 47 H 0.07 0.60 6.98 -2.39 -0.02 0.58 16 48 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.10 1.03 6.63 -2.39 -0.02 1.02 16 51 H 0.10 1.22 6.63 -2.39 -0.02 1.20 16 52 H 0.08 1.66 7.13 -2.39 -0.02 1.64 16 Total: -1.00 -69.14 402.31 -1.40 -70.54 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.50 Total: 19.33 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 4.39 Total: -9.21 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -6.95 Total: -100.81 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.90 Total: -18.47 kcal Atomic # 9 Polarization: -10.10 SS G_CDS: 1.53 Total: -8.57 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.14 -1.40 -70.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570083809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.478 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds