Wall clock time and date at job start Tue Mar 31 2020 18:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47027 * 2 1 4 4 C 1.53000 * 109.47686 * 120.00077 * 2 1 3 5 5 H 1.08991 * 109.47352 * 182.10909 * 4 2 1 6 6 C 1.53004 * 109.46885 * 62.10913 * 4 2 1 7 7 N 1.46892 * 109.47140 * 65.64281 * 6 4 2 8 8 C 1.46903 * 110.99912 * 183.46771 * 7 6 4 9 9 C 1.53007 * 109.47011 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47305 * 60.00180 * 9 8 7 11 11 O 1.42898 * 109.46949 * 299.99939 * 9 8 7 12 12 C 1.52998 * 109.47012 * 180.02562 * 9 8 7 13 13 N 1.46900 * 109.47111 * 184.15101 * 12 9 8 14 14 C 1.46903 * 110.99983 * 199.43823 * 13 12 9 15 15 C 1.46898 * 111.00225 * 75.48677 * 13 12 9 16 16 C 1.50702 * 109.47416 * 189.99908 * 15 13 12 17 17 H 1.07996 * 119.99596 * 0.02562 * 16 15 13 18 18 C 1.37873 * 119.99924 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00355 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99858 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47182 * 60.00263 * 20 18 16 22 22 H 1.48494 * 109.47304 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47196 * 300.00444 * 20 18 16 24 24 C 1.50702 * 109.47111 * 302.11390 * 4 2 1 25 25 C 1.38230 * 120.00371 * 76.70064 * 24 4 2 26 26 C 1.38238 * 120.00134 * 179.79233 * 25 24 4 27 27 C 1.38234 * 119.99635 * 0.43464 * 26 25 24 28 28 C 1.38235 * 120.00026 * 359.81983 * 27 26 25 29 29 C 1.38231 * 120.00486 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47391 * 66.75027 * 1 2 3 31 31 H 1.09004 * 109.46925 * 186.75053 * 1 2 3 32 32 H 1.09001 * 109.46930 * 306.74364 * 1 2 3 33 33 H 1.08999 * 109.47497 * 240.00244 * 2 1 3 34 34 H 1.08997 * 109.47577 * 184.41366 * 3 2 1 35 35 H 1.09002 * 109.47234 * 304.41981 * 3 2 1 36 36 H 1.09003 * 109.46845 * 64.41636 * 3 2 1 37 37 H 1.08997 * 109.46887 * 185.64680 * 6 4 2 38 38 H 1.09007 * 109.47052 * 305.64638 * 6 4 2 39 39 H 1.00898 * 111.00467 * 307.42062 * 7 6 4 40 40 H 1.08995 * 109.47240 * 300.00249 * 8 7 6 41 41 H 1.08996 * 109.46953 * 60.00597 * 8 7 6 42 42 H 0.96695 * 114.00384 * 299.99783 * 11 9 8 43 43 H 1.08999 * 109.46992 * 304.14725 * 12 9 8 44 44 H 1.08997 * 109.47688 * 64.14867 * 12 9 8 45 45 H 1.09001 * 109.46521 * 64.59118 * 14 13 12 46 46 H 1.09001 * 109.47129 * 184.58800 * 14 13 12 47 47 H 1.08998 * 109.47580 * 304.59130 * 14 13 12 48 48 H 1.09002 * 109.47239 * 310.00347 * 15 13 12 49 49 H 1.09005 * 109.47325 * 70.00026 * 15 13 12 50 50 H 0.96996 * 120.00078 * 179.97438 * 19 18 16 51 51 H 1.08002 * 120.00109 * 359.97438 * 25 24 4 52 52 H 1.07997 * 119.99875 * 180.27201 * 26 25 24 53 53 H 1.08002 * 119.99890 * 179.83224 * 27 26 25 54 54 H 1.08001 * 119.99662 * 180.02562 * 28 27 26 55 55 H 1.07997 * 120.00531 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1294 -0.6886 1.2682 6 6 1.5740 -2.1783 1.2229 7 7 2.2125 -2.8765 0.0993 8 6 1.7252 -4.2582 -0.0073 9 6 2.4120 -4.9518 -1.1856 10 1 3.4901 -4.9581 -1.0254 11 8 2.1139 -4.2471 -2.3925 12 6 1.9040 -6.3906 -1.2970 13 7 2.6346 -7.0866 -2.3646 14 6 1.8994 -8.2751 -2.8174 15 6 3.9918 -7.4416 -1.9288 16 6 4.7887 -7.9269 -3.1122 17 1 4.3327 -7.9671 -4.0903 18 6 6.1002 -8.3184 -2.9463 19 7 6.6557 -8.2689 -1.7553 20 14 7.0882 -8.9193 -4.4134 21 1 7.1614 -7.8439 -5.4348 22 1 8.4601 -9.2782 -3.9728 23 1 6.4283 -10.1139 -4.9988 24 6 1.4955 -0.0418 2.4792 25 6 0.1829 -0.2494 2.8596 26 6 -0.3154 0.3705 3.9902 27 6 0.4965 1.2051 4.7354 28 6 1.8076 1.4169 4.3520 29 6 2.3071 0.7936 3.2238 30 1 -0.3634 0.4056 -0.9442 31 1 -0.3633 -1.0206 0.1208 32 1 -0.3633 0.6148 0.8235 33 1 1.8934 -0.5138 -0.8900 34 1 3.1271 1.4436 -0.0791 35 1 1.6134 1.9787 -0.8477 36 1 1.7426 1.9330 0.9270 37 1 1.8508 -2.6652 2.1579 38 1 0.4910 -2.2112 1.1028 39 1 2.0712 -2.3756 -0.7651 40 1 1.9529 -4.7958 0.9131 41 1 0.6471 -4.2519 -0.1672 42 1 1.1702 -4.2017 -2.5987 43 1 2.0646 -6.9069 -0.3506 44 1 0.8393 -6.3831 -1.5307 45 1 0.9585 -7.9681 -3.2741 46 1 2.4990 -8.8163 -3.5493 47 1 1.6951 -8.9227 -1.9648 48 1 4.4765 -6.5648 -1.4992 49 1 3.9379 -8.2308 -1.1788 50 1 7.5783 -8.5448 -1.6386 51 1 -0.4526 -0.8982 2.2751 52 1 -1.3396 0.2049 4.2899 53 1 0.1064 1.6916 5.6172 54 1 2.4420 2.0686 4.9344 55 1 3.3316 0.9587 2.9245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574138556.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:10 Heat of formation + Delta-G solvation = -55.573796 kcal Electronic energy + Delta-G solvation = -29134.766535 eV Core-core repulsion = 25362.995040 eV Total energy + Delta-G solvation = -3771.771495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.98006 -39.55910 -38.13179 -37.12728 -35.25899 -34.60066 -32.28220 -31.86049 -31.23837 -29.44016 -28.76776 -28.10046 -26.65184 -25.23508 -24.08827 -23.12867 -22.92393 -22.47946 -21.70929 -20.03364 -18.61131 -17.71573 -17.53336 -17.21767 -16.63691 -16.46614 -16.39262 -16.17930 -15.91376 -15.54964 -15.48267 -15.08028 -14.92347 -14.76935 -14.21730 -14.17595 -14.03965 -13.93061 -13.47064 -13.36087 -13.33716 -13.11684 -12.97730 -12.88871 -12.73015 -12.61869 -12.56964 -12.52014 -12.29893 -12.19310 -12.10411 -11.80825 -11.62716 -11.54944 -11.45238 -11.33565 -11.19517 -10.73814 -10.59747 -9.73261 -9.51434 -9.29048 -8.94569 -8.19473 -6.29198 0.51096 0.55469 1.40126 1.44293 1.51930 2.40857 2.88777 2.98911 3.12905 3.44553 3.69773 3.75670 3.84056 3.96320 4.05632 4.13338 4.17657 4.20839 4.25176 4.30970 4.34740 4.40559 4.42853 4.54676 4.57606 4.63472 4.66533 4.69018 4.75364 4.78163 4.80710 4.83326 4.92230 5.02675 5.07166 5.08655 5.09506 5.14264 5.16675 5.22718 5.26811 5.31017 5.32047 5.43876 5.48447 5.64438 5.65345 5.68380 5.80342 6.05542 6.09521 6.17780 6.35365 6.49922 6.65646 6.86535 7.05505 7.39966 8.91510 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.002038 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.417853 B =13736.085228 C =14044.011121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.040 4.040 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.698 5.698 8 C 0.044 3.956 9 C 0.127 3.873 10 H 0.062 0.938 11 O -0.557 6.557 12 C 0.027 3.973 13 N -0.543 5.543 14 C 0.039 3.961 15 C 0.209 3.791 16 C -0.524 4.524 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.265 1.265 24 C -0.072 4.072 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.133 4.133 28 C -0.128 4.128 29 C -0.128 4.128 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.349 0.651 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.379 0.621 43 H 0.027 0.973 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.011 0.989 48 H 0.003 0.997 49 H -0.042 1.042 50 H 0.264 0.736 51 H 0.129 0.871 52 H 0.137 0.863 53 H 0.137 0.863 54 H 0.134 0.866 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 20.414 10.505 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.058 4.058 5 H 0.091 0.909 6 C -0.058 4.058 7 N -0.331 5.331 8 C -0.086 4.086 9 C 0.067 3.933 10 H 0.080 0.920 11 O -0.363 6.363 12 C -0.102 4.102 13 N -0.266 5.266 14 C -0.109 4.109 15 C 0.083 3.917 16 C -0.562 4.562 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.190 1.190 24 C -0.073 4.073 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.151 4.151 28 C -0.146 4.146 29 C -0.147 4.147 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.170 0.830 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.226 0.774 43 H 0.045 0.955 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.030 0.970 48 H 0.021 0.979 49 H -0.024 1.024 50 H 0.073 0.927 51 H 0.147 0.853 52 H 0.154 0.846 53 H 0.155 0.845 54 H 0.152 0.848 55 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.638 20.581 10.533 28.485 hybrid contribution -0.377 -1.053 0.059 1.120 sum -17.015 19.529 10.592 27.983 Atomic orbital electron populations 1.22071 0.94650 1.01895 1.02173 1.21068 0.96455 0.96410 0.96574 1.21817 1.00803 0.95620 1.01880 1.20150 1.00199 0.92953 0.92528 0.90903 1.22043 0.96704 0.93009 0.94043 1.60292 1.61780 1.02495 1.08579 1.22445 0.97502 0.90155 0.98526 1.21675 0.98990 0.88955 0.83730 0.91999 1.86651 1.30246 1.76807 1.42584 1.22789 0.98956 0.95301 0.93169 1.61951 1.02836 1.25252 1.36598 1.22247 0.98139 0.91513 0.99026 1.19372 0.85721 0.92616 0.93976 1.21450 0.96958 1.42414 0.95357 0.92023 1.25943 0.98930 0.96051 0.98983 1.70084 1.14131 1.49296 1.24033 0.85434 0.77289 0.78952 0.78932 1.19492 1.20783 1.19022 1.19757 0.94299 0.97314 0.95912 1.21259 0.95130 1.00440 0.97247 1.21416 1.00727 0.97305 0.95182 1.21416 0.94175 0.99010 1.00522 1.21377 0.96304 1.00039 0.96873 1.21230 0.99990 0.97658 0.95777 0.92356 0.92374 0.91964 0.91197 0.93022 0.92263 0.92655 0.92181 0.93357 0.82997 0.90906 0.92613 0.77372 0.95524 0.88476 0.89977 0.92685 0.97001 0.97927 1.02445 0.92735 0.85338 0.84555 0.84527 0.84785 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.64 71.98 0.55 -1.57 16 2 C -0.09 -1.43 2.56 -10.79 -0.03 -1.45 16 3 C -0.14 -2.29 9.00 71.98 0.65 -1.64 16 4 C -0.04 -0.73 2.13 -11.54 -0.02 -0.75 16 5 H 0.07 1.57 7.97 -2.39 -0.02 1.55 16 6 C 0.07 1.39 4.46 86.31 0.38 1.77 16 7 N -0.70 -16.87 6.52 -513.89 -3.35 -20.22 16 8 C 0.04 1.08 5.39 86.30 0.47 1.54 16 9 C 0.13 4.16 3.32 30.60 0.10 4.26 16 10 H 0.06 2.68 6.67 -2.39 -0.02 2.66 16 11 O -0.56 -17.65 12.61 -148.98 -1.88 -19.53 16 12 C 0.03 0.92 4.63 86.30 0.40 1.32 16 13 N -0.54 -23.76 4.62 -927.04 -4.28 -28.04 16 14 C 0.04 1.49 9.37 127.69 1.20 2.69 16 15 C 0.21 11.58 4.55 85.56 0.39 11.96 16 16 C -0.52 -30.81 8.39 25.60 0.21 -30.59 16 17 H 0.06 3.56 7.16 -2.91 -0.02 3.54 16 18 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 19 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 20 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.07 -1.25 3.67 -19.86 -0.07 -1.33 16 25 C -0.12 -1.92 6.91 22.27 0.15 -1.76 16 26 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 27 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 28 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 29 C -0.13 -2.20 8.85 22.27 0.20 -2.01 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.78 5.72 -2.39 -0.01 0.77 16 32 H 0.06 0.88 5.99 -2.39 -0.01 0.87 16 33 H 0.07 1.28 6.54 -2.39 -0.02 1.27 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.90 6.55 -2.39 -0.02 0.88 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 0.81 4.95 -2.38 -0.01 0.80 16 39 H 0.35 8.21 6.26 -89.70 -0.56 7.65 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.38 8.25 9.04 -74.06 -0.67 7.58 16 43 H 0.03 0.95 8.00 -2.39 -0.02 0.93 16 44 H 0.10 2.56 7.94 -2.39 -0.02 2.54 16 45 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.05 2.33 6.67 -2.39 -0.02 2.31 16 47 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 48 H 0.00 0.16 6.56 -2.39 -0.02 0.15 16 49 H -0.04 -2.51 8.12 -2.38 -0.02 -2.53 16 50 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 51 H 0.13 1.76 5.56 -2.91 -0.02 1.74 16 52 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 53 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 54 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 55 H 0.12 1.96 8.01 -2.91 -0.02 1.93 16 Total: -1.00 -70.31 419.70 -1.86 -72.17 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.36 Total: 27.76 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 5.71 Total: -22.06 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -7.35 Total: -106.04 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.88 Total: -19.53 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.31 -1.86 -72.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574138556.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.594 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds