Wall clock time and date at job start Tue Mar 31 2020 18:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46820 * 2 1 4 4 C 1.50698 * 109.46914 * 240.00179 * 2 1 3 5 5 C 1.38232 * 120.00157 * 59.72857 * 4 2 1 6 6 C 1.38239 * 120.00142 * 179.76780 * 5 4 2 7 7 C 1.38237 * 119.99684 * 0.49959 * 6 5 4 8 8 C 1.50703 * 120.00058 * 179.72823 * 7 6 5 9 9 C 1.53004 * 109.46771 * 270.02509 * 8 7 6 10 10 N 1.46904 * 109.46616 * 180.02562 * 9 8 7 11 11 C 1.46902 * 110.99758 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46788 * 305.00107 * 12 11 10 14 14 O 1.42901 * 109.47145 * 64.99746 * 12 11 10 15 15 C 1.52999 * 109.47253 * 184.99768 * 12 11 10 16 16 N 1.46894 * 109.47328 * 178.50966 * 15 12 11 17 17 C 1.46892 * 111.00255 * 164.01133 * 16 15 12 18 18 C 1.46904 * 111.00146 * 287.96665 * 16 15 12 19 19 C 1.50700 * 109.47118 * 169.99817 * 18 16 15 20 20 H 1.07996 * 119.99906 * 359.97438 * 19 18 16 21 21 C 1.37882 * 119.99644 * 180.02562 * 19 18 16 22 22 N 1.31512 * 120.00092 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99633 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47380 * 90.00188 * 23 21 19 25 25 H 1.48503 * 109.47207 * 209.99700 * 23 21 19 26 26 H 1.48495 * 109.47626 * 329.99989 * 23 21 19 27 27 C 1.38243 * 120.00099 * 359.75220 * 7 6 5 28 28 C 1.38234 * 119.99717 * 359.97438 * 27 7 6 29 29 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46965 * 300.00223 * 1 2 3 31 31 H 1.09001 * 109.47236 * 59.99865 * 1 2 3 32 32 H 1.09001 * 109.47236 * 120.00135 * 2 1 3 33 33 H 1.08996 * 109.46883 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47326 * 300.00079 * 3 2 1 35 35 H 1.08994 * 109.47463 * 60.00342 * 3 2 1 36 36 H 1.08001 * 120.00441 * 359.97438 * 5 4 2 37 37 H 1.07996 * 120.00236 * 180.23124 * 6 5 4 38 38 H 1.08992 * 109.47133 * 30.02362 * 8 7 6 39 39 H 1.08998 * 109.47251 * 150.02618 * 8 7 6 40 40 H 1.09000 * 109.46865 * 299.99741 * 9 8 7 41 41 H 1.08998 * 109.47144 * 60.00044 * 9 8 7 42 42 H 1.00895 * 111.00024 * 56.04250 * 10 9 8 43 43 H 1.09000 * 109.46860 * 299.99970 * 11 10 9 44 44 H 1.09006 * 109.47000 * 59.99496 * 11 10 9 45 45 H 0.96702 * 113.99574 * 59.99680 * 14 12 11 46 46 H 1.09001 * 109.46989 * 298.51109 * 15 12 11 47 47 H 1.09000 * 109.47183 * 58.50954 * 15 12 11 48 48 H 1.08994 * 109.47298 * 65.48684 * 17 16 15 49 49 H 1.09001 * 109.47341 * 185.48606 * 17 16 15 50 50 H 1.08999 * 109.47326 * 305.48802 * 17 16 15 51 51 H 1.08994 * 109.47134 * 289.99914 * 18 16 15 52 52 H 1.08998 * 109.46803 * 49.99909 * 18 16 15 53 53 H 0.97003 * 119.99877 * 180.02562 * 22 21 19 54 54 H 1.07990 * 119.99947 * 179.97438 * 27 7 6 55 55 H 1.07998 * 120.00021 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6938 -0.2414 -2.4860 6 6 2.1584 -0.8902 -3.6147 7 6 2.9532 -2.0141 -3.4879 8 6 3.4548 -2.7250 -4.7184 9 6 2.4464 -3.7980 -5.1340 10 7 2.9356 -4.4914 -6.3331 11 6 1.9905 -5.5308 -6.7626 12 6 2.5329 -6.2288 -8.0114 13 1 2.7413 -5.4858 -8.7813 14 8 3.7368 -6.9250 -7.6830 15 6 1.4937 -7.2242 -8.5312 16 7 1.9998 -7.8685 -9.7505 17 6 1.2275 -9.0775 -10.0664 18 6 1.9964 -6.9311 -10.8815 19 6 2.7420 -7.5401 -12.0409 20 1 3.1755 -8.5247 -11.9468 21 6 2.8717 -6.8396 -13.2215 22 7 2.3443 -5.6403 -13.3358 23 14 3.7966 -7.5941 -14.6583 24 1 2.8509 -8.3624 -15.5072 25 1 4.4222 -6.5159 -15.4654 26 1 4.8520 -8.5039 -14.1449 27 6 3.2876 -2.4862 -2.2323 28 6 2.8275 -1.8340 -1.1037 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.0689 0.6339 -2.5851 37 1 1.8970 -0.5216 -4.5956 38 1 3.5759 -2.0067 -5.5291 39 1 4.4149 -3.1933 -4.5015 40 1 2.3254 -4.5164 -4.3233 41 1 1.4863 -3.3298 -5.3509 42 1 3.8539 -4.8793 -6.1771 43 1 1.8655 -6.2610 -5.9631 44 1 1.0275 -5.0741 -6.9913 45 1 3.6259 -7.6030 -7.0025 46 1 1.3049 -7.9824 -7.7712 47 1 0.5667 -6.6972 -8.7568 48 1 0.2035 -8.7997 -10.3156 49 1 1.6824 -9.5876 -10.9155 50 1 1.2237 -9.7423 -9.2027 51 1 0.9684 -6.7244 -11.1790 52 1 2.4825 -6.0018 -10.5847 53 1 2.4352 -5.1477 -14.1665 54 1 3.9081 -3.3644 -2.1333 55 1 3.0883 -2.2030 -0.1228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578422116.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:18 Heat of formation + Delta-G solvation = -66.765312 kcal Electronic energy + Delta-G solvation = -27743.867794 eV Core-core repulsion = 23971.610999 eV Total energy + Delta-G solvation = -3772.256795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.62767 -39.60566 -37.76935 -36.95382 -35.89241 -34.60009 -33.02894 -31.80872 -31.00612 -29.39000 -28.62783 -27.98241 -26.65948 -25.26028 -24.03302 -23.57929 -22.84308 -22.29083 -21.63192 -20.74773 -18.61819 -17.64958 -17.31407 -17.19526 -16.71193 -16.50827 -16.32065 -16.05486 -15.82105 -15.58909 -15.12996 -14.94552 -14.84894 -14.63133 -14.43581 -14.33949 -14.14282 -13.97075 -13.85058 -13.52446 -13.27311 -13.10463 -12.99828 -12.86056 -12.66922 -12.59314 -12.51382 -12.45905 -12.30742 -12.29208 -12.15353 -11.96509 -11.86635 -11.52714 -11.49637 -11.46964 -11.31017 -10.76535 -10.59685 -9.80260 -9.40337 -9.35577 -8.95292 -8.19373 -6.29011 0.42812 0.52257 1.40143 1.42532 1.54194 2.41120 2.78866 2.99384 3.13261 3.42985 3.70598 3.76539 3.84441 3.96824 4.03198 4.11944 4.14655 4.18735 4.28819 4.31809 4.33075 4.36386 4.45527 4.54376 4.58813 4.59807 4.61769 4.62625 4.67890 4.77718 4.78934 4.80305 4.95988 4.99047 4.99185 5.04980 5.07967 5.11757 5.14859 5.22212 5.24649 5.28158 5.32264 5.35668 5.38062 5.56703 5.65558 5.75832 5.77531 6.03081 6.08299 6.14355 6.35350 6.45317 6.65418 6.86898 7.05482 7.40300 8.91870 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.001561 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.980094 B =17938.459222 C =18392.419931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.093 4.093 8 C -0.073 4.073 9 C 0.074 3.926 10 N -0.700 5.700 11 C 0.045 3.955 12 C 0.124 3.876 13 H 0.064 0.936 14 O -0.558 6.558 15 C 0.027 3.973 16 N -0.542 5.542 17 C 0.041 3.959 18 C 0.209 3.791 19 C -0.524 4.524 20 H 0.061 0.939 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.266 1.266 27 C -0.122 4.122 28 C -0.125 4.125 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.349 0.651 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.379 0.621 46 H 0.098 0.902 47 H 0.026 0.974 48 H 0.007 0.993 49 H 0.054 0.946 50 H 0.083 0.917 51 H -0.043 1.043 52 H 0.004 0.996 53 H 0.264 0.736 54 H 0.131 0.869 55 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 9.005 30.784 32.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.094 4.094 8 C -0.110 4.110 9 C -0.055 4.055 10 N -0.333 5.333 11 C -0.085 4.085 12 C 0.064 3.936 13 H 0.082 0.918 14 O -0.364 6.364 15 C -0.102 4.102 16 N -0.265 5.265 17 C -0.107 4.107 18 C 0.083 3.917 19 C -0.562 4.562 20 H 0.079 0.921 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.794 3.206 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.190 1.190 27 C -0.140 4.140 28 C -0.143 4.143 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.168 0.832 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.227 0.773 46 H 0.116 0.884 47 H 0.044 0.956 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.102 0.898 51 H -0.025 1.025 52 H 0.023 0.977 53 H 0.072 0.928 54 H 0.149 0.851 55 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.053 9.867 29.867 31.522 hybrid contribution -0.697 -0.744 -0.398 1.094 sum -2.750 9.123 29.469 30.972 Atomic orbital electron populations 1.21851 0.93942 1.01821 1.02427 1.20164 0.96239 0.96240 0.94792 1.21846 1.00912 0.94823 1.02427 1.20106 0.97526 0.95866 0.95170 1.21126 1.00361 1.00378 0.91955 1.21236 0.98067 0.95890 0.99189 1.19896 0.98467 0.96131 0.94857 1.20480 0.98464 0.97400 0.94700 1.21852 0.98193 0.95399 0.90009 1.60287 1.06195 1.31182 1.35628 1.22452 0.96338 0.93525 0.96170 1.21715 0.84698 0.92040 0.95176 0.91825 1.86653 1.32556 1.54635 1.62568 1.22787 0.95766 0.97984 0.93702 1.61943 1.53250 1.07426 1.03923 1.22219 0.94269 0.92648 1.01561 1.19383 0.92773 0.91324 0.88219 1.21490 1.34211 1.02999 0.97507 0.92061 1.25936 0.96774 0.95307 1.01819 1.70093 1.46767 1.13172 1.27534 0.85374 0.78772 0.78033 0.78381 1.19602 1.20739 1.19030 1.21230 1.00505 1.00328 0.91889 1.21290 0.98198 0.95700 0.99116 0.93106 0.91233 0.92641 0.89865 0.93037 0.92641 0.91233 0.85266 0.85866 0.91007 0.90434 0.94554 0.91775 0.83155 0.92672 0.90685 0.77283 0.88389 0.95585 0.97423 0.92684 0.89812 1.02511 0.97748 0.92752 0.85104 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.00 71.98 0.65 -0.78 16 2 C -0.06 -0.61 3.09 -11.54 -0.04 -0.65 16 3 C -0.14 -1.40 9.01 71.98 0.65 -0.75 16 4 C -0.09 -1.29 4.78 -19.87 -0.09 -1.39 16 5 C -0.12 -1.95 8.71 22.27 0.19 -1.76 16 6 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 7 C -0.09 -1.70 5.13 -19.86 -0.10 -1.81 16 8 C -0.07 -1.36 5.60 29.85 0.17 -1.19 16 9 C 0.07 1.50 5.67 86.30 0.49 1.99 16 10 N -0.70 -17.30 6.50 -513.86 -3.34 -20.64 16 11 C 0.05 1.13 5.36 86.30 0.46 1.59 16 12 C 0.12 4.11 3.23 30.59 0.10 4.21 16 13 H 0.06 2.76 6.56 -2.39 -0.02 2.75 16 14 O -0.56 -18.16 12.75 -148.98 -1.90 -20.06 16 15 C 0.03 0.91 4.63 86.30 0.40 1.31 16 16 N -0.54 -23.75 4.60 -927.10 -4.27 -28.02 16 17 C 0.04 1.58 9.32 127.69 1.19 2.77 16 18 C 0.21 11.60 4.57 85.56 0.39 11.99 16 19 C -0.52 -30.94 8.54 25.60 0.22 -30.72 16 20 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 21 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 22 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 23 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 28 C -0.13 -1.88 9.67 22.27 0.22 -1.67 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.58 7.37 -2.39 -0.02 0.56 16 32 H 0.08 0.78 7.88 -2.39 -0.02 0.77 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.56 7.41 -2.39 -0.02 0.55 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.13 1.73 7.10 -2.91 -0.02 1.71 16 37 H 0.12 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 39 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 40 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.35 8.40 8.29 -89.70 -0.74 7.65 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.38 8.59 9.05 -74.06 -0.67 7.92 16 46 H 0.10 2.59 7.88 -2.39 -0.02 2.57 16 47 H 0.03 0.92 8.05 -2.39 -0.02 0.91 16 48 H 0.01 0.28 8.13 -2.39 -0.02 0.26 16 49 H 0.05 2.29 6.90 -2.39 -0.02 2.28 16 50 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 51 H -0.04 -2.56 8.11 -2.39 -0.02 -2.58 16 52 H 0.00 0.27 6.38 -2.39 -0.02 0.26 16 53 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 54 H 0.13 1.77 8.06 -2.92 -0.02 1.74 16 55 H 0.14 1.50 7.95 -2.91 -0.02 1.47 16 Total: -1.00 -70.93 437.03 -1.98 -72.91 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.57 Total: 26.17 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 5.78 Total: -20.29 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -7.32 Total: -106.53 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -1.90 Total: -20.06 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.93 -1.98 -72.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578422116.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.142 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds