Wall clock time and date at job start Tue Mar 31 2020 18:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 C 1.50695 * 109.46962 * 120.00064 * 2 1 3 5 5 C 1.38240 * 120.00147 * 119.99801 * 4 2 1 6 6 C 1.38230 * 119.99970 * 180.02562 * 5 4 2 7 7 C 1.38239 * 120.00392 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00080 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47039 * 90.00213 * 8 7 6 10 10 N 1.46893 * 109.47093 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00024 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47409 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47406 * 59.99712 * 12 11 10 14 14 O 1.42905 * 109.46872 * 299.99796 * 12 11 10 15 15 C 1.52998 * 109.47318 * 179.97438 * 12 11 10 16 16 N 1.46906 * 109.47197 * 182.15693 * 15 12 11 17 17 C 1.46901 * 110.99925 * 199.76710 * 16 15 12 18 18 C 1.46892 * 110.99774 * 75.81142 * 16 15 12 19 19 C 1.50701 * 109.46993 * 189.99771 * 18 16 15 20 20 H 1.07994 * 120.00328 * 0.02562 * 19 18 16 21 21 C 1.37887 * 119.99865 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00027 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99584 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47468 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47108 * 120.00613 * 23 21 19 26 26 H 1.48507 * 109.47091 * 240.00414 * 23 21 19 27 27 C 1.38232 * 119.99634 * 0.25150 * 7 6 5 28 28 C 1.38236 * 120.00116 * 359.49335 * 27 7 6 29 29 H 1.08998 * 109.47281 * 300.00043 * 1 2 3 30 30 H 1.09006 * 109.46910 * 59.99956 * 1 2 3 31 31 H 1.08996 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47281 * 239.99957 * 2 1 3 33 33 H 1.08998 * 109.47113 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46885 * 299.99868 * 3 2 1 35 35 H 1.08998 * 109.46951 * 59.99755 * 3 2 1 36 36 H 1.07999 * 119.99902 * 0.02562 * 5 4 2 37 37 H 1.08002 * 120.00154 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47443 * 330.00500 * 8 7 6 39 39 H 1.08997 * 109.47234 * 210.00159 * 8 7 6 40 40 H 1.09006 * 109.47185 * 59.99492 * 9 8 7 41 41 H 1.08997 * 109.47063 * 300.00051 * 9 8 7 42 42 H 1.00901 * 111.00017 * 303.94996 * 10 9 8 43 43 H 1.08995 * 109.47180 * 59.99940 * 11 10 9 44 44 H 1.09002 * 109.47373 * 300.00035 * 11 10 9 45 45 H 0.96701 * 114.00201 * 299.99769 * 14 12 11 46 46 H 1.09000 * 109.47245 * 62.15773 * 15 12 11 47 47 H 1.09002 * 109.47237 * 302.15962 * 15 12 11 48 48 H 1.08999 * 109.47031 * 291.01429 * 17 16 15 49 49 H 1.09002 * 109.47006 * 51.00954 * 17 16 15 50 50 H 1.08993 * 109.46940 * 171.01218 * 17 16 15 51 51 H 1.08994 * 109.47530 * 310.00139 * 18 16 15 52 52 H 1.09008 * 109.47253 * 70.00012 * 18 16 15 53 53 H 0.97000 * 119.99606 * 179.97438 * 22 21 19 54 54 H 1.07995 * 120.00015 * 179.72885 * 27 7 6 55 55 H 1.08000 * 120.00486 * 180.23079 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2304 5 6 2.8270 -1.8344 1.1036 6 6 3.2872 -2.4863 2.2323 7 6 2.9524 -2.0147 3.4879 8 6 3.4538 -2.7258 4.7183 9 6 4.8014 -2.1337 5.1360 10 7 5.2898 -2.8264 6.3357 11 6 6.5851 -2.2836 6.7665 12 6 7.0606 -3.0288 8.0152 13 1 7.1690 -4.0890 7.7865 14 8 6.1026 -2.8629 9.0626 15 6 8.4099 -2.4638 8.4635 16 7 8.8911 -3.2135 9.6316 17 6 9.9033 -2.4459 10.3693 18 6 9.4129 -4.5280 9.2350 19 6 9.6670 -5.3598 10.4657 20 1 9.4610 -4.9527 11.4446 21 6 10.1614 -6.6410 10.3420 22 7 10.4118 -7.1369 9.1499 23 14 10.4757 -7.6721 11.8675 24 1 10.1146 -6.8898 13.0769 25 1 9.6492 -8.9046 11.8108 26 1 11.9127 -8.0421 11.9276 27 6 2.1530 -0.8941 3.6147 28 6 1.6971 -0.2390 2.4860 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.0882 -2.2032 0.1227 37 1 3.9078 -3.3647 2.1333 38 1 3.5750 -3.7869 4.5007 39 1 2.7353 -2.6008 5.5283 40 1 4.6802 -1.0725 5.3536 41 1 5.5199 -2.2587 4.3260 42 1 4.6117 -2.7797 7.0815 43 1 6.4768 -1.2233 6.9949 44 1 7.3159 -2.4104 5.9678 45 1 5.9552 -1.9422 9.3186 46 1 8.2938 -1.4130 8.7288 47 1 9.1305 -2.5558 7.6507 48 1 10.8121 -2.3747 9.7718 49 1 9.5231 -1.4448 10.5729 50 1 10.1257 -2.9485 11.3105 51 1 8.6841 -5.0318 8.6001 52 1 10.3453 -4.3982 8.6854 53 1 10.7600 -8.0380 9.0630 54 1 1.8879 -0.5281 4.5955 55 1 1.0756 0.6387 2.5850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578422117.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:22 Heat of formation + Delta-G solvation = -66.936018 kcal Electronic energy + Delta-G solvation = -27718.478289 eV Core-core repulsion = 23946.214091 eV Total energy + Delta-G solvation = -3772.264198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.62675 -39.59661 -37.77323 -36.95813 -35.87925 -34.60388 -33.02260 -31.80597 -31.01944 -29.39002 -28.62417 -27.97844 -26.66617 -25.26154 -24.06020 -23.53722 -22.80580 -22.29692 -21.66853 -20.74570 -18.61858 -17.61735 -17.39005 -17.19348 -16.62766 -16.51626 -16.33830 -16.09775 -15.77505 -15.58848 -15.09143 -15.02393 -14.84211 -14.61326 -14.42711 -14.38391 -14.09423 -13.98083 -13.82215 -13.56428 -13.25826 -13.11775 -12.99448 -12.86813 -12.65142 -12.56425 -12.49066 -12.46501 -12.30846 -12.30370 -12.14745 -11.96503 -11.86535 -11.53379 -11.52340 -11.46792 -11.31038 -10.76754 -10.60905 -9.80165 -9.40015 -9.34614 -8.94999 -8.20031 -6.29630 0.42938 0.52349 1.39918 1.41556 1.55007 2.40829 2.78824 2.98910 3.12734 3.44162 3.70300 3.76079 3.85226 3.98174 4.02337 4.11652 4.15284 4.18194 4.29602 4.31713 4.33337 4.37246 4.44926 4.54257 4.58545 4.60006 4.61910 4.62548 4.68620 4.77662 4.79348 4.80839 4.95589 4.98850 4.99422 5.05949 5.07959 5.11963 5.15030 5.21733 5.24725 5.28504 5.31387 5.35119 5.38588 5.56793 5.65635 5.75944 5.77652 6.02798 6.08021 6.14480 6.35005 6.46928 6.65375 6.86657 7.05674 7.39905 8.91442 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.001539 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.224911 B =18188.672287 C =18661.101076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.087 4.087 5 C -0.127 4.127 6 C -0.125 4.125 7 C -0.093 4.093 8 C -0.072 4.072 9 C 0.074 3.926 10 N -0.699 5.699 11 C 0.045 3.955 12 C 0.126 3.874 13 H 0.062 0.938 14 O -0.557 6.557 15 C 0.026 3.974 16 N -0.542 5.542 17 C 0.042 3.958 18 C 0.209 3.791 19 C -0.523 4.523 20 H 0.061 0.939 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.277 1.277 27 C -0.122 4.122 28 C -0.119 4.119 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.350 0.650 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.379 0.621 46 H 0.098 0.902 47 H 0.027 0.973 48 H 0.007 0.993 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.003 0.997 52 H -0.042 1.042 53 H 0.264 0.736 54 H 0.131 0.869 55 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.496 19.582 -17.641 32.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.145 4.145 6 C -0.143 4.143 7 C -0.094 4.094 8 C -0.110 4.110 9 C -0.055 4.055 10 N -0.332 5.332 11 C -0.085 4.085 12 C 0.066 3.934 13 H 0.080 0.920 14 O -0.363 6.363 15 C -0.103 4.103 16 N -0.266 5.266 17 C -0.106 4.106 18 C 0.083 3.917 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.795 3.205 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.202 1.202 27 C -0.140 4.140 28 C -0.137 4.137 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.170 0.830 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.227 0.773 46 H 0.116 0.884 47 H 0.045 0.955 48 H 0.025 0.975 49 H 0.102 0.898 50 H 0.072 0.928 51 H 0.021 0.979 52 H -0.024 1.024 53 H 0.073 0.927 54 H 0.149 0.851 55 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.570 18.201 -17.799 32.110 hybrid contribution 1.099 0.405 0.306 1.211 sum -18.472 18.606 -17.492 31.518 Atomic orbital electron populations 1.21843 0.93729 1.01829 1.02533 1.20163 0.96406 0.96241 0.94724 1.21844 1.00813 0.94776 1.02532 1.20106 0.97485 0.95651 0.95419 1.21268 0.98380 0.95916 0.98931 1.21232 1.00311 1.00469 0.92324 1.19896 0.98299 0.96472 0.94686 1.20477 0.95932 0.99573 0.95021 1.21851 0.95798 0.95342 0.92485 1.60258 1.05233 1.58826 1.08886 1.22438 0.92305 0.96836 0.96967 1.21684 0.86811 0.99246 0.85692 0.91965 1.86652 1.61434 1.32269 1.55930 1.22804 0.96462 0.98572 0.92459 1.61935 1.37801 1.03539 1.23290 1.22218 0.92556 0.97636 0.98171 1.19392 0.90970 0.86363 0.94967 1.21521 1.41903 0.99011 0.93683 0.92060 1.25938 0.95354 0.99120 0.99430 1.70098 1.46189 1.16975 1.24341 0.85322 0.77761 0.78244 0.79206 1.18712 1.20499 1.20215 1.21236 0.97968 0.95373 0.99405 1.21149 1.00402 1.00332 0.91803 0.92331 0.91282 0.93149 0.90226 0.93241 0.91269 0.92342 0.85106 0.85852 0.91003 0.90366 0.94561 0.91863 0.83049 0.92722 0.90813 0.77322 0.88425 0.95518 0.97460 0.89784 0.92753 0.97911 1.02394 0.92747 0.85081 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.01 71.98 0.65 -0.68 16 2 C -0.06 -0.62 3.09 -11.54 -0.04 -0.66 16 3 C -0.14 -1.37 9.01 71.98 0.65 -0.72 16 4 C -0.09 -1.29 4.78 -19.87 -0.09 -1.38 16 5 C -0.13 -2.07 9.67 22.27 0.22 -1.86 16 6 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 7 C -0.09 -1.69 5.13 -19.87 -0.10 -1.79 16 8 C -0.07 -1.33 5.61 29.85 0.17 -1.16 16 9 C 0.07 1.48 5.67 86.31 0.49 1.97 16 10 N -0.70 -17.01 6.50 -513.89 -3.34 -20.35 16 11 C 0.04 1.11 5.39 86.30 0.47 1.57 16 12 C 0.13 4.15 3.31 30.59 0.10 4.25 16 13 H 0.06 2.68 6.73 -2.39 -0.02 2.66 16 14 O -0.56 -17.82 12.58 -148.98 -1.87 -19.70 16 15 C 0.03 0.89 4.65 86.30 0.40 1.29 16 16 N -0.54 -23.74 4.59 -927.06 -4.25 -27.99 16 17 C 0.04 1.62 9.31 127.69 1.19 2.81 16 18 C 0.21 11.59 4.55 85.56 0.39 11.98 16 19 C -0.52 -30.87 8.58 25.60 0.22 -30.65 16 20 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 21 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 22 N -0.94 -58.09 13.29 21.45 0.28 -57.81 16 23 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 27 C -0.12 -1.97 9.70 22.27 0.22 -1.76 16 28 C -0.12 -1.76 8.71 22.27 0.19 -1.57 16 29 H 0.06 0.53 7.39 -2.39 -0.02 0.51 16 30 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.81 7.88 -2.39 -0.02 0.79 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.54 7.39 -2.39 -0.02 0.52 16 36 H 0.13 1.72 7.95 -2.91 -0.02 1.69 16 37 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 39 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 40 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.35 8.18 8.12 -89.69 -0.73 7.45 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.38 8.38 9.05 -74.06 -0.67 7.71 16 46 H 0.10 2.57 7.75 -2.39 -0.02 2.55 16 47 H 0.03 0.95 8.00 -2.39 -0.02 0.93 16 48 H 0.01 0.27 8.08 -2.39 -0.02 0.25 16 49 H 0.08 2.49 7.85 -2.39 -0.02 2.47 16 50 H 0.05 2.25 7.01 -2.39 -0.02 2.23 16 51 H 0.00 0.17 6.60 -2.39 -0.02 0.16 16 52 H -0.04 -2.49 8.07 -2.38 -0.02 -2.51 16 53 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 54 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 55 H 0.13 1.50 7.10 -2.91 -0.02 1.48 16 Total: -1.00 -70.92 436.94 -1.92 -72.83 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.55 Total: 25.22 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 5.79 Total: -20.00 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -7.31 Total: -106.15 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.87 Total: -19.70 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.92 -1.92 -72.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578422117.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.897 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds