Wall clock time and date at job start Tue Mar 31 2020 18:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47144 * 2 1 4 4 C 1.50701 * 109.47399 * 240.00453 * 2 1 3 5 5 N 1.32164 * 119.91080 * 287.03317 * 4 2 1 6 6 C 1.33092 * 120.08999 * 179.97438 * 5 4 2 7 7 N 1.37991 * 120.04639 * 180.02562 * 6 5 4 8 8 N 1.32867 * 119.91096 * 359.97438 * 6 5 4 9 9 C 1.32842 * 119.82527 * 0.02562 * 8 6 5 10 10 N 1.38000 * 120.04265 * 180.02562 * 9 8 6 11 11 C 1.46491 * 119.99859 * 0.02562 * 10 9 8 12 12 C 1.46500 * 119.99460 * 179.97438 * 10 9 8 13 13 N 1.32132 * 119.91264 * 106.75678 * 4 2 1 14 14 N 1.46895 * 109.47174 * 119.99990 * 2 1 3 15 15 C 1.46855 * 111.00098 * 174.73497 * 14 2 1 16 16 C 1.53036 * 109.52323 * 185.84098 * 15 14 2 17 17 C 1.53116 * 109.27805 * 300.81636 * 16 15 14 18 18 C 1.52997 * 109.52171 * 177.55952 * 17 16 15 19 19 C 1.50696 * 109.47234 * 65.32079 * 18 17 16 20 20 H 1.08002 * 119.99868 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00204 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99763 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00059 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47110 * 89.99893 * 23 21 19 25 25 H 1.48505 * 109.47504 * 210.00215 * 23 21 19 26 26 H 1.48506 * 109.47256 * 330.00350 * 23 21 19 27 27 C 1.53120 * 109.16039 * 57.65518 * 17 16 15 28 28 C 1.46847 * 111.00171 * 298.94158 * 14 2 1 29 29 H 1.09002 * 109.47553 * 299.99808 * 1 2 3 30 30 H 1.09008 * 109.47308 * 60.00378 * 1 2 3 31 31 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99878 * 359.97438 * 7 6 5 33 33 H 0.97004 * 120.00306 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47473 * 89.99686 * 11 10 9 35 35 H 1.09008 * 109.47107 * 209.99489 * 11 10 9 36 36 H 1.09003 * 109.47489 * 329.99452 * 11 10 9 37 37 H 1.08998 * 109.47208 * 60.00527 * 12 10 9 38 38 H 1.09002 * 109.46390 * 180.02562 * 12 10 9 39 39 H 1.08997 * 109.47377 * 299.99697 * 12 10 9 40 40 H 1.09005 * 109.46004 * 305.85666 * 15 14 2 41 41 H 1.08999 * 109.46210 * 65.82097 * 15 14 2 42 42 H 1.08996 * 109.50398 * 60.75808 * 16 15 14 43 43 H 1.08998 * 109.50216 * 180.87697 * 16 15 14 44 44 H 1.08996 * 109.52879 * 297.75394 * 17 16 15 45 45 H 1.09005 * 109.47270 * 185.31891 * 18 17 16 46 46 H 1.08995 * 109.47691 * 305.31461 * 18 17 16 47 47 H 0.97004 * 119.99356 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.50841 * 182.40449 * 27 17 16 49 49 H 1.09004 * 109.50238 * 62.28935 * 27 17 16 50 50 H 1.08998 * 109.46090 * 294.17616 * 28 14 2 51 51 H 1.09004 * 109.45732 * 54.14420 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.9357 -2.0255 -1.3179 6 6 2.3778 -2.6564 -2.4032 7 7 2.2759 -4.0296 -2.4937 8 7 2.9164 -1.9622 -3.3999 9 6 3.0118 -0.6404 -3.3084 10 7 3.5700 0.0852 -4.3411 11 6 4.0572 -0.6023 -5.5394 12 6 3.6742 1.5429 -4.2393 13 7 2.5633 -0.0160 -2.2214 14 7 2.0196 -0.6925 1.1994 15 6 3.4822 -0.8220 1.1721 16 6 3.9426 -1.6719 2.3586 17 6 3.4949 -1.0049 3.6621 18 6 3.8992 -1.8807 4.8496 19 6 5.4022 -1.9439 4.9385 20 1 6.0085 -1.4121 4.2201 21 6 6.0034 -2.6796 5.9376 22 7 7.3151 -2.7343 6.0155 23 14 4.9549 -3.5976 7.1815 24 1 4.6783 -4.9679 6.6804 25 1 5.6798 -3.6805 8.4749 26 1 3.6729 -2.8743 7.3780 27 6 1.9729 -0.8378 3.6442 28 6 1.5696 -0.0121 2.4205 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8822 -4.5357 -1.7659 33 1 2.5986 -4.4888 -3.2849 34 1 3.2510 -0.6755 -6.2694 35 1 4.8864 -0.0399 -5.9691 36 1 4.3969 -1.6028 -5.2716 37 1 4.2840 1.8041 -3.3744 38 1 4.1374 1.9379 -5.1435 39 1 2.6786 1.9713 -4.1247 40 1 3.7870 -1.3015 0.2418 41 1 3.9356 0.1672 1.2362 42 1 3.5004 -2.6656 2.2877 43 1 5.0293 -1.7548 2.3468 44 1 3.9676 -0.0269 3.7520 45 1 3.4985 -1.4538 5.7691 46 1 3.5008 -2.8859 4.7121 47 1 7.7381 -3.2516 6.7186 48 1 1.6524 -0.3248 4.5510 49 1 1.4997 -1.8185 3.5936 50 1 2.0320 0.9731 2.4787 51 1 0.4852 0.0965 2.3969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579587330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:58 Heat of formation + Delta-G solvation = 60.790632 kcal Electronic energy + Delta-G solvation = -29800.898946 eV Core-core repulsion = 25962.925799 eV Total energy + Delta-G solvation = -3837.973147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.218 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.55378 -40.28110 -38.33122 -37.27099 -35.95026 -34.64506 -33.70928 -32.58810 -32.15219 -31.57177 -29.33283 -29.01147 -27.33872 -26.26784 -25.11061 -23.71324 -23.46020 -22.49945 -21.44034 -20.54479 -19.97430 -18.84732 -18.77941 -17.40381 -17.22699 -16.85399 -16.64717 -16.33989 -15.94860 -15.64437 -15.40751 -15.28942 -15.16896 -14.97174 -14.88432 -14.76259 -14.31757 -13.85419 -13.64925 -13.49551 -13.35945 -13.29838 -13.07702 -12.94597 -12.83908 -12.71975 -12.49410 -12.40491 -12.22292 -12.06099 -11.87895 -11.75271 -11.64459 -11.26563 -10.93178 -10.75869 -10.70508 -10.52696 -10.38304 -9.90731 -9.26163 -9.24176 -8.25732 -6.27978 0.11535 0.41643 1.37003 1.38384 1.50878 1.51526 2.17793 2.38795 2.63618 2.86505 3.05050 3.09935 3.45735 3.79188 3.95414 3.99123 4.07044 4.17364 4.24270 4.31499 4.37369 4.43472 4.50626 4.52850 4.55382 4.71300 4.74226 4.74659 4.81725 4.83530 4.89012 4.91653 5.02359 5.04468 5.09107 5.13515 5.27824 5.28664 5.37515 5.37985 5.43575 5.51437 5.54865 5.72088 5.75982 5.96481 6.05458 6.15586 6.22989 6.34211 6.35800 6.73506 6.79329 7.35656 7.62204 8.91292 Molecular weight = 334.22amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.002805 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.530510 B = 9979.432565 C =10456.360117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.151 3.849 3 H 0.069 0.931 4 C 0.429 3.571 5 N -0.621 5.621 6 C 0.608 3.392 7 N -0.789 5.789 8 N -0.664 5.664 9 C 0.603 3.397 10 N -0.584 5.584 11 C 0.100 3.900 12 C 0.106 3.894 13 N -0.647 5.647 14 N -0.517 5.517 15 C 0.081 3.919 16 C -0.087 4.087 17 C -0.069 4.069 18 C -0.004 4.004 19 C -0.519 4.519 20 H 0.029 0.971 21 C -0.001 4.001 22 N -0.956 5.956 23 Si 0.950 3.050 24 H -0.270 1.270 25 H -0.286 1.286 26 H -0.243 1.243 27 C -0.105 4.105 28 C 0.060 3.940 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.425 0.575 33 H 0.424 0.576 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.021 0.979 46 H 0.015 0.985 47 H 0.264 0.736 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.035 0.965 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 5.786 -23.307 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.041 3.959 3 H 0.086 0.914 4 C 0.151 3.849 5 N -0.356 5.356 6 C 0.241 3.759 7 N -0.340 5.340 8 N -0.405 5.405 9 C 0.239 3.761 10 N -0.301 5.301 11 C -0.042 4.042 12 C -0.036 4.036 13 N -0.382 5.382 14 N -0.243 5.243 15 C -0.047 4.047 16 C -0.125 4.125 17 C -0.088 4.088 18 C -0.041 4.041 19 C -0.557 4.557 20 H 0.047 0.953 21 C -0.196 4.196 22 N -0.598 5.598 23 Si 0.774 3.226 24 H -0.195 1.195 25 H -0.212 1.212 26 H -0.166 1.166 27 C -0.142 4.142 28 C -0.067 4.067 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.258 0.742 33 H 0.257 0.743 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.053 0.947 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.907 5.343 -23.435 28.823 hybrid contribution 1.109 -0.329 0.497 1.259 sum -14.797 5.015 -22.938 27.754 Atomic orbital electron populations 1.21770 0.90051 1.03384 1.03366 1.20385 0.97707 0.93934 0.83888 0.91377 1.22973 0.84035 0.85729 0.92202 1.68491 1.30117 1.11331 1.25637 1.19504 0.83877 0.88598 0.83968 1.41654 1.66749 1.00298 1.25292 1.67933 1.32103 1.07460 1.33047 1.19332 0.85431 0.84845 0.86509 1.46236 1.61151 1.07346 1.15384 1.21838 0.99794 0.98287 0.84261 1.21752 1.02355 0.76008 1.03445 1.68387 1.24609 1.41264 1.03977 1.61882 1.09760 1.51343 1.01331 1.21788 0.88017 0.97468 0.97456 1.21325 0.98794 0.98733 0.93681 1.20971 0.95881 0.97739 0.94219 1.19554 0.93868 0.95600 0.95118 1.21487 0.92373 1.29366 1.12488 0.95266 1.26036 0.96061 0.97505 1.00039 1.70090 1.10943 1.43530 1.35189 0.85657 0.79788 0.79351 0.77843 1.19485 1.21185 1.16650 1.21628 0.94113 1.01012 0.97475 1.22237 1.01738 0.94766 0.87955 0.89052 0.91597 0.91682 0.74150 0.74280 0.91965 0.88304 0.91486 0.93134 0.87121 0.92254 0.93919 0.96045 0.92567 0.94495 0.93738 0.96090 0.96707 0.92738 0.90303 0.91403 0.94669 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.98 71.98 0.65 -1.84 16 2 C 0.15 3.87 2.50 44.17 0.11 3.98 16 3 H 0.07 1.72 8.13 -2.38 -0.02 1.70 16 4 C 0.43 12.61 4.90 138.54 0.68 13.29 16 5 N -0.62 -18.59 9.93 -190.36 -1.89 -20.48 16 6 C 0.61 16.57 8.76 261.26 2.29 18.86 16 7 N -0.79 -14.74 9.05 -59.47 -0.54 -15.28 16 8 N -0.66 -18.16 9.29 -200.59 -1.86 -20.03 16 9 C 0.60 16.59 8.19 261.25 2.14 18.73 16 10 N -0.58 -11.79 3.36 -760.56 -2.56 -14.35 16 11 C 0.10 1.37 10.42 127.77 1.33 2.70 16 12 C 0.11 1.57 10.17 127.77 1.30 2.87 16 13 N -0.65 -18.84 9.63 -190.35 -1.83 -20.67 16 14 N -0.52 -14.99 4.39 -875.50 -3.84 -18.83 16 15 C 0.08 2.84 5.20 86.32 0.45 3.29 16 16 C -0.09 -3.57 5.15 30.64 0.16 -3.42 16 17 C -0.07 -2.79 2.20 -10.72 -0.02 -2.82 16 18 C 0.00 -0.20 3.52 29.85 0.11 -0.09 16 19 C -0.52 -30.73 9.00 25.60 0.23 -30.50 16 20 H 0.03 1.91 7.33 -2.91 -0.02 1.89 16 21 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 22 N -0.96 -61.77 13.96 21.45 0.30 -61.47 16 23 Si 0.95 45.54 27.47 68.60 1.88 47.43 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.24 -10.71 6.54 99.48 0.65 -10.06 16 27 C -0.10 -3.19 5.38 30.65 0.16 -3.03 16 28 C 0.06 1.52 5.24 86.32 0.45 1.98 16 29 H 0.09 1.39 6.30 -2.39 -0.02 1.37 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.43 6.89 8.95 -92.71 -0.83 6.06 16 33 H 0.42 5.85 8.95 -92.71 -0.83 5.02 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.78 7.92 -2.38 -0.02 0.76 16 36 H 0.07 1.13 7.37 -2.39 -0.02 1.11 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 0.82 7.79 -2.39 -0.02 0.80 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.04 1.61 6.45 -2.38 -0.02 1.60 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 43 H 0.04 1.74 7.05 -2.39 -0.02 1.73 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.02 0.98 7.20 -2.38 -0.02 0.96 16 46 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 47 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 48 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 50 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.11 2.08 6.04 -2.39 -0.01 2.07 16 Total: -1.00 -77.27 397.83 -0.62 -77.89 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.77 Total: 21.36 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 10.49 Total: 24.43 kcal Atomic # 7 Polarization: -158.89 SS G_CDS: -12.22 Total: -171.11 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -77.27 -0.62 -77.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579587330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.678 kcal (2) G-P(sol) polarization free energy of solvation -77.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds