Wall clock time and date at job start Tue Mar 31 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 120.00224 * 2 1 4 4 C 1.38210 * 119.99985 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00128 * 0.03039 * 4 3 2 6 6 C 1.50703 * 119.99889 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47216 * 264.99427 * 6 5 4 8 8 C 1.52997 * 109.47211 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47380 * 180.02562 * 8 7 6 10 10 C 1.46899 * 111.00076 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46798 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47555 * 304.99556 * 11 10 9 13 13 O 1.42901 * 109.47612 * 65.00079 * 11 10 9 14 14 C 1.53000 * 109.47000 * 185.00066 * 11 10 9 15 15 N 1.46905 * 109.47114 * 180.02562 * 14 11 10 16 16 C 1.46900 * 110.99850 * 293.94896 * 15 14 11 17 17 C 1.46906 * 111.00051 * 169.99929 * 15 14 11 18 18 C 1.50699 * 109.47140 * 189.99841 * 17 15 14 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 15 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 15 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46946 * 59.99897 * 22 20 18 24 24 H 1.48506 * 109.46938 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99580 * 22 20 18 26 26 C 1.38217 * 120.00101 * 0.24383 * 5 4 3 27 27 C 1.50697 * 119.99892 * 179.72510 * 26 5 4 28 28 C 1.38211 * 119.99600 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47259 * 89.99856 * 1 2 3 30 30 H 1.09001 * 109.47008 * 210.00054 * 1 2 3 31 31 H 1.09004 * 109.46725 * 329.99387 * 1 2 3 32 32 H 1.08003 * 119.99806 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.99551 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47141 * 144.99565 * 6 5 4 35 35 H 1.08998 * 109.46912 * 24.99988 * 6 5 4 36 36 H 1.09005 * 109.46953 * 60.00023 * 7 6 5 37 37 H 1.09001 * 109.47349 * 300.00533 * 7 6 5 38 38 H 1.09005 * 109.47126 * 60.00151 * 8 7 6 39 39 H 1.09001 * 109.47417 * 300.00513 * 8 7 6 40 40 H 1.00903 * 110.99433 * 303.95406 * 9 8 7 41 41 H 1.08995 * 109.47186 * 60.00137 * 10 9 8 42 42 H 1.08998 * 109.47052 * 299.99451 * 10 9 8 43 43 H 0.96697 * 113.99735 * 59.99435 * 13 11 10 44 44 H 1.08997 * 109.47704 * 60.00204 * 14 11 10 45 45 H 1.09000 * 109.47058 * 299.99530 * 14 11 10 46 46 H 1.08996 * 109.47030 * 296.04770 * 16 15 14 47 47 H 1.08999 * 109.46702 * 56.04909 * 16 15 14 48 48 H 1.08996 * 109.46890 * 176.04778 * 16 15 14 49 49 H 1.09004 * 109.47040 * 309.99779 * 17 15 14 50 50 H 1.09000 * 109.47033 * 69.99731 * 17 15 14 51 51 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 52 52 H 1.09002 * 109.46853 * 90.00764 * 27 26 5 53 53 H 1.09002 * 109.47047 * 210.00136 * 27 26 5 54 54 H 1.09000 * 109.47664 * 330.00411 * 27 26 5 55 55 H 1.08001 * 120.00370 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0004 6 6 5.7787 0.0000 0.0004 7 6 6.2887 -0.1258 -1.4365 8 6 7.8187 -0.1251 -1.4366 9 7 8.3084 -0.2453 -2.8163 10 6 9.7769 -0.2487 -2.8553 11 6 10.2482 -0.3755 -4.3054 12 1 9.7994 -1.2601 -4.7573 13 8 9.8533 0.7860 -5.0381 14 6 11.7724 -0.5045 -4.3368 15 7 12.2250 -0.6257 -5.7291 16 6 11.7557 -1.8824 -6.3277 17 6 13.6870 -0.5135 -5.8191 18 6 14.0937 -0.3956 -7.2654 19 1 13.3414 -0.4037 -8.0402 20 6 15.4262 -0.2786 -7.5994 21 7 16.3424 -0.2693 -6.6558 22 14 15.9303 -0.1317 -9.3921 23 1 15.3043 1.0774 -9.9848 24 1 17.4083 -0.0184 -9.4830 25 1 15.4792 -1.3367 -10.1334 26 6 3.5806 -1.1970 -0.0053 27 6 4.3341 -2.5021 -0.0117 28 6 2.1980 -1.1970 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0001 34 1 6.1421 -0.8419 0.5899 35 1 6.1420 0.9313 0.4348 36 1 5.9254 0.7161 -2.0260 37 1 5.9253 -1.0571 -1.8709 38 1 8.1824 -0.9668 -0.8470 39 1 8.1817 0.8064 -1.0024 40 1 7.9332 -1.0687 -3.2627 41 1 10.1538 -1.0915 -2.2761 42 1 10.1538 0.6817 -2.4305 43 1 10.2167 1.6122 -4.6911 44 1 12.0738 -1.3905 -3.7780 45 1 12.2213 0.3801 -3.8850 46 1 12.2039 -2.7251 -5.8014 47 1 10.6701 -1.9398 -6.2475 48 1 12.0447 -1.9147 -7.3781 49 1 14.0177 0.3714 -5.2753 50 1 14.1470 -1.4006 -5.3835 51 1 17.2798 -0.1873 -6.8909 52 1 4.5157 -2.8217 1.0145 53 1 3.7450 -3.2592 -0.5291 54 1 5.2865 -2.3693 -0.5249 55 1 1.6580 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591241642.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:43 Heat of formation + Delta-G solvation = -67.663582 kcal Electronic energy + Delta-G solvation = -27576.658974 eV Core-core repulsion = 23804.363227 eV Total energy + Delta-G solvation = -3772.295747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.65629 -39.57760 -37.74439 -36.75601 -35.35153 -34.60662 -33.38224 -32.49919 -30.89024 -29.18922 -28.41556 -27.99463 -27.08234 -25.50877 -24.20196 -22.96122 -22.80244 -22.26713 -21.66575 -20.82986 -18.55997 -17.64092 -17.09583 -16.97564 -16.88332 -16.68784 -16.13420 -15.95288 -15.81217 -15.56658 -15.28187 -15.18923 -14.77016 -14.72887 -14.34254 -14.02227 -13.99780 -13.90431 -13.77624 -13.43104 -13.28997 -13.12351 -13.04502 -12.87906 -12.81893 -12.65089 -12.55602 -12.53505 -12.43428 -12.37498 -12.12676 -11.98815 -11.85678 -11.60882 -11.54661 -11.49449 -11.39001 -10.62839 -10.61147 -9.62866 -9.31688 -9.25373 -8.95418 -8.20540 -6.30603 0.44362 0.50751 1.41285 1.44712 1.52623 2.40596 2.78073 2.97464 3.11951 3.45262 3.73916 3.84359 3.88031 3.93377 4.02418 4.09604 4.12059 4.19839 4.28746 4.35119 4.42535 4.45192 4.48882 4.53210 4.56509 4.65895 4.69261 4.71465 4.72804 4.76934 4.78308 4.79636 4.84076 4.86666 4.90797 5.01969 5.06305 5.07664 5.15439 5.17895 5.19455 5.31412 5.32760 5.35212 5.45846 5.59508 5.64716 5.72838 5.80523 6.03204 6.07933 6.18990 6.32511 6.44239 6.64316 6.85295 7.05158 7.39247 8.90228 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.031604 B = 0.001392 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.737709 B =20111.533882 C =20194.740528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.099 4.099 6 C -0.073 4.073 7 C -0.100 4.100 8 C 0.062 3.938 9 N -0.689 5.689 10 C 0.039 3.961 11 C 0.129 3.871 12 H 0.091 0.909 13 O -0.554 6.554 14 C 0.024 3.976 15 N -0.539 5.539 16 C 0.042 3.958 17 C 0.208 3.792 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.090 4.090 27 C -0.118 4.118 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.343 0.657 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.378 0.622 44 H 0.032 0.968 45 H 0.068 0.932 46 H 0.010 0.990 47 H 0.076 0.924 48 H 0.053 0.947 49 H 0.004 0.996 50 H -0.039 1.039 51 H 0.265 0.735 52 H 0.076 0.924 53 H 0.071 0.929 54 H 0.072 0.928 55 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.096 -1.719 18.554 35.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.156 4.156 4 C -0.140 4.140 5 C -0.099 4.099 6 C -0.111 4.111 7 C -0.138 4.138 8 C -0.067 4.067 9 N -0.321 5.321 10 C -0.091 4.091 11 C 0.069 3.931 12 H 0.108 0.892 13 O -0.359 6.359 14 C -0.106 4.106 15 N -0.263 5.263 16 C -0.106 4.106 17 C 0.081 3.919 18 C -0.564 4.564 19 H 0.079 0.921 20 C -0.195 4.195 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.193 1.193 26 C -0.090 4.090 27 C -0.175 4.175 28 C -0.153 4.153 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.161 0.839 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.225 0.775 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.028 0.972 47 H 0.095 0.905 48 H 0.072 0.928 49 H 0.022 0.978 50 H -0.022 1.022 51 H 0.073 0.927 52 H 0.095 0.905 53 H 0.090 0.910 54 H 0.091 0.909 55 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -30.479 -1.088 17.839 35.333 hybrid contribution 1.669 -1.001 0.405 1.988 sum -28.810 -2.089 18.244 34.165 Atomic orbital electron populations 1.20817 0.89837 1.03447 1.02821 1.20217 0.97269 0.93130 0.99359 1.21259 0.94374 0.98252 1.01758 1.21267 0.94564 0.98051 1.00085 1.19899 0.96123 0.92804 1.01054 1.20514 0.90241 1.03447 0.96901 1.21418 0.93955 1.02321 0.96129 1.21986 0.95095 1.01016 0.88583 1.60338 1.07029 1.46782 1.17920 1.22516 0.88631 1.01863 0.96094 1.21745 0.90793 0.89562 0.91024 0.89166 1.86548 1.74676 1.16753 1.57961 1.22834 0.97235 1.00665 0.89820 1.61929 1.12700 1.35243 1.16447 1.22207 0.99639 0.89039 0.99761 1.19401 0.82868 0.93328 0.96272 1.21450 0.92203 1.49641 0.93089 0.92133 1.25899 0.96458 0.94802 1.02373 1.70073 1.01256 1.51572 1.34625 0.85440 0.76915 0.79099 0.79184 1.19419 1.20684 1.19270 1.20031 0.93973 0.95605 0.99421 1.20899 1.00303 0.93400 1.02867 1.21162 0.93740 0.98243 1.02176 0.90753 0.90876 0.90838 0.84976 0.85272 0.90211 0.90532 0.92270 0.91918 0.94616 0.91110 0.83931 0.93784 0.90278 0.77452 0.95018 0.91385 0.97197 0.90512 0.92768 0.97781 1.02154 0.92668 0.90524 0.91003 0.90895 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.10 -1.45 5.88 -19.87 -0.12 -1.56 16 3 C -0.14 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.12 -1.92 9.68 22.27 0.22 -1.70 16 5 C -0.10 -1.55 5.13 -19.87 -0.10 -1.65 16 6 C -0.07 -0.95 4.65 29.85 0.14 -0.81 16 7 C -0.10 -1.47 5.26 30.59 0.16 -1.31 16 8 C 0.06 0.97 5.68 86.30 0.49 1.46 16 9 N -0.69 -13.56 6.45 -513.90 -3.32 -16.87 16 10 C 0.04 0.83 5.32 86.30 0.46 1.29 16 11 C 0.13 3.55 3.02 30.59 0.09 3.64 16 12 H 0.09 2.50 6.47 -2.39 -0.02 2.48 16 13 O -0.55 -17.35 13.15 -148.98 -1.96 -19.31 16 14 C 0.02 0.81 4.62 86.30 0.40 1.21 16 15 N -0.54 -23.70 4.62 -927.03 -4.28 -27.98 16 16 C 0.04 1.66 9.16 127.69 1.17 2.83 16 17 C 0.21 11.28 4.72 85.56 0.40 11.68 16 18 C -0.53 -30.50 8.52 25.60 0.22 -30.28 16 19 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 20 C 0.00 0.15 5.46 84.65 0.46 0.61 16 21 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 22 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C -0.09 -1.38 5.88 -19.86 -0.12 -1.50 16 27 C -0.12 -1.35 9.22 71.24 0.66 -0.69 16 28 C -0.14 -2.02 9.36 22.27 0.21 -1.81 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 31 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 32 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.08 0.91 7.01 -2.38 -0.02 0.90 16 35 H 0.08 0.92 8.05 -2.39 -0.02 0.90 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.06 0.93 6.88 -2.39 -0.02 0.91 16 38 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.34 6.40 8.73 -89.69 -0.78 5.62 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.38 10.04 9.04 -74.06 -0.67 9.37 16 44 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 45 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 46 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 47 H 0.08 2.56 6.30 -2.39 -0.02 2.54 16 48 H 0.05 2.33 6.86 -2.39 -0.02 2.32 16 49 H 0.00 0.24 7.93 -2.38 -0.02 0.22 16 50 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 51 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 52 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 54 H 0.07 0.81 5.40 -2.39 -0.01 0.79 16 55 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -68.82 435.48 -2.17 -70.99 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.60 Total: 23.53 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 5.67 Total: -20.82 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -7.31 Total: -101.34 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.96 Total: -19.31 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.82 -2.17 -70.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591241642.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.327 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds