Wall clock time and date at job start Tue Mar 31 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38261 * 120.00171 * 2 1 4 4 C 1.38208 * 119.99762 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00170 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99625 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46735 * 264.99666 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47515 * 180.02562 * 8 7 6 10 10 C 1.46900 * 111.00559 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47220 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47319 * 60.00163 * 11 10 9 13 13 O 1.42894 * 109.47339 * 299.99666 * 11 10 9 14 14 C 1.53006 * 109.46894 * 179.97438 * 11 10 9 15 15 N 1.46900 * 109.47003 * 184.99794 * 14 11 10 16 16 C 1.46896 * 110.99755 * 66.05022 * 15 14 11 17 17 C 1.46908 * 110.99800 * 189.99988 * 15 14 11 18 18 C 1.50701 * 109.46741 * 169.99953 * 17 15 14 19 19 H 1.07998 * 120.00089 * 0.02562 * 18 17 15 20 20 C 1.37872 * 119.99723 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00187 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00099 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46955 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47388 * 120.00368 * 22 20 18 25 25 H 1.48505 * 109.47047 * 240.00663 * 22 20 18 26 26 C 1.38215 * 120.00117 * 0.25385 * 5 4 3 27 27 C 1.50698 * 120.00001 * 179.72559 * 26 5 4 28 28 C 1.38213 * 119.99960 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47373 * 89.99991 * 1 2 3 30 30 H 1.09000 * 109.47201 * 210.00404 * 1 2 3 31 31 H 1.08999 * 109.47261 * 330.00278 * 1 2 3 32 32 H 1.08003 * 119.99712 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99551 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46797 * 145.00014 * 6 5 4 35 35 H 1.08992 * 109.47518 * 25.00011 * 6 5 4 36 36 H 1.09002 * 109.47398 * 300.00410 * 7 6 5 37 37 H 1.09001 * 109.47194 * 60.00591 * 7 6 5 38 38 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 40 40 H 1.00905 * 110.99991 * 56.04757 * 9 8 7 41 41 H 1.09003 * 109.46962 * 299.99965 * 10 9 8 42 42 H 1.09005 * 109.46918 * 59.99862 * 10 9 8 43 43 H 0.96704 * 114.00212 * 300.00323 * 13 11 10 44 44 H 1.09002 * 109.47288 * 305.00381 * 14 11 10 45 45 H 1.09004 * 109.47030 * 64.99923 * 14 11 10 46 46 H 1.09000 * 109.47691 * 59.99958 * 16 15 14 47 47 H 1.09004 * 109.46896 * 179.97438 * 16 15 14 48 48 H 1.09000 * 109.47126 * 299.99798 * 16 15 14 49 49 H 1.08999 * 109.47006 * 289.99885 * 17 15 14 50 50 H 1.08995 * 109.46852 * 50.00569 * 17 15 14 51 51 H 0.97005 * 120.00221 * 179.97438 * 21 20 18 52 52 H 1.08998 * 109.47428 * 90.00256 * 27 26 5 53 53 H 1.09003 * 109.47281 * 210.00534 * 27 26 5 54 54 H 1.09005 * 109.47109 * 330.00011 * 27 26 5 55 55 H 1.08008 * 119.99586 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.2886 -0.1259 -1.4365 8 6 7.8186 -0.1265 -1.4365 9 7 8.3082 -0.2466 -2.8162 10 6 9.7767 -0.2512 -2.8553 11 6 10.2479 -0.3768 -4.3055 12 1 9.8718 0.4668 -4.8841 13 8 9.7529 -1.5957 -4.8633 14 6 11.7774 -0.3810 -4.3461 15 7 12.2301 -0.3809 -5.7436 16 6 11.8661 0.8741 -6.4148 17 6 13.6766 -0.6229 -5.8285 18 6 14.0628 -0.8600 -7.2657 19 1 13.3091 -0.8331 -8.0388 20 6 15.3783 -1.1102 -7.5938 21 7 16.2961 -1.1424 -6.6524 22 14 15.8572 -1.4033 -9.3754 23 1 14.6488 -1.3139 -10.2339 24 1 16.8418 -0.3756 -9.7989 25 1 16.4616 -2.7531 -9.5099 26 6 3.5805 -1.1970 -0.0053 27 6 4.3340 -2.5021 -0.0116 28 6 2.1980 -1.1970 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6583 2.1327 0.0004 33 1 4.1204 2.1326 0.0010 34 1 6.1420 -0.8419 0.5900 35 1 6.1420 0.9312 0.4348 36 1 5.9252 -1.0572 -1.8708 37 1 5.9253 0.7160 -2.0260 38 1 8.1823 0.8047 -1.0021 39 1 8.1816 -0.9684 -0.8472 40 1 7.9330 0.4873 -3.3983 41 1 10.1544 0.6787 -2.4302 42 1 10.1529 -1.0946 -2.2762 43 1 10.0482 -2.3900 -4.3975 44 1 12.1568 0.5075 -3.8412 45 1 12.1519 -1.2725 -3.8429 46 1 12.3323 1.7119 -5.8964 47 1 12.2134 0.8477 -7.4477 48 1 10.7829 0.9940 -6.3983 49 1 14.2133 0.2455 -5.4465 50 1 13.9338 -1.4995 -5.2339 51 1 17.2217 -1.3188 -6.8832 52 1 4.5156 -2.8218 1.0146 53 1 3.7450 -3.2593 -0.5292 54 1 5.2865 -2.3693 -0.5247 55 1 1.6579 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591241643.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:46 Heat of formation + Delta-G solvation = -67.823473 kcal Electronic energy + Delta-G solvation = -27579.999496 eV Core-core repulsion = 23807.696815 eV Total energy + Delta-G solvation = -3772.302680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.65324 -39.57629 -37.74624 -36.76220 -35.34335 -34.61546 -33.37328 -32.49343 -30.89446 -29.18563 -28.41747 -27.98624 -27.09669 -25.50741 -24.19380 -22.96602 -22.77937 -22.26437 -21.68266 -20.82478 -18.56675 -17.64094 -17.07002 -16.99949 -16.91144 -16.67608 -16.13044 -15.96961 -15.76776 -15.58377 -15.26889 -15.17254 -14.79659 -14.74632 -14.31917 -14.02801 -13.99571 -13.87853 -13.75631 -13.45364 -13.30824 -13.15502 -13.04558 -12.86504 -12.79765 -12.65793 -12.58220 -12.51426 -12.40314 -12.37001 -12.12614 -11.99043 -11.84620 -11.61610 -11.56207 -11.48407 -11.36250 -10.62832 -10.62493 -9.62675 -9.31682 -9.25139 -8.95611 -8.21164 -6.30979 0.44563 0.50937 1.40697 1.41595 1.55547 2.40274 2.78227 2.97258 3.11520 3.45505 3.73287 3.84612 3.88057 3.94006 4.04700 4.08279 4.12095 4.19505 4.30131 4.35154 4.41558 4.45297 4.49173 4.54284 4.55896 4.66161 4.69046 4.70473 4.72701 4.77911 4.80255 4.82440 4.85460 4.85974 4.89252 5.03187 5.06093 5.07856 5.15641 5.17988 5.19798 5.31165 5.31321 5.36087 5.47821 5.59573 5.64844 5.72931 5.81092 6.03141 6.07950 6.19147 6.32095 6.43818 6.64130 6.85414 7.05486 7.38953 8.90059 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.001393 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.495299 B =20101.237162 C =20131.115981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.121 4.121 5 C -0.099 4.099 6 C -0.073 4.073 7 C -0.101 4.101 8 C 0.062 3.938 9 N -0.688 5.688 10 C 0.039 3.961 11 C 0.129 3.871 12 H 0.090 0.910 13 O -0.554 6.554 14 C 0.025 3.975 15 N -0.541 5.541 16 C 0.040 3.960 17 C 0.207 3.793 18 C -0.523 4.523 19 H 0.061 0.939 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.090 4.090 27 C -0.119 4.119 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.342 0.658 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.378 0.622 44 H 0.032 0.968 45 H 0.068 0.932 46 H 0.011 0.989 47 H 0.054 0.946 48 H 0.076 0.924 49 H -0.039 1.039 50 H 0.004 0.996 51 H 0.264 0.736 52 H 0.076 0.924 53 H 0.070 0.930 54 H 0.072 0.928 55 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.920 3.534 18.385 35.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.156 4.156 4 C -0.139 4.139 5 C -0.099 4.099 6 C -0.111 4.111 7 C -0.139 4.139 8 C -0.067 4.067 9 N -0.319 5.319 10 C -0.091 4.091 11 C 0.068 3.932 12 H 0.108 0.892 13 O -0.359 6.359 14 C -0.105 4.105 15 N -0.265 5.265 16 C -0.108 4.108 17 C 0.081 3.919 18 C -0.562 4.562 19 H 0.079 0.921 20 C -0.196 4.196 21 N -0.576 5.576 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.090 4.090 27 C -0.176 4.176 28 C -0.154 4.154 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.160 0.840 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.226 0.774 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.095 0.905 49 H -0.021 1.021 50 H 0.022 0.978 51 H 0.073 0.927 52 H 0.095 0.905 53 H 0.089 0.911 54 H 0.091 0.909 55 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -30.310 2.845 17.745 35.238 hybrid contribution 1.710 1.167 0.270 2.087 sum -28.601 4.012 18.016 34.039 Atomic orbital electron populations 1.20816 0.89845 1.03445 1.02820 1.20217 0.97263 0.93129 0.99357 1.21258 0.94387 0.98210 1.01775 1.21258 0.94532 0.97977 1.00152 1.19901 0.96124 0.92797 1.01076 1.20513 0.90239 1.03417 0.96926 1.21423 0.93960 1.02372 0.96110 1.21987 0.95099 1.00397 0.89193 1.60312 1.06980 1.53807 1.10805 1.22513 0.88670 1.01476 0.96482 1.21746 0.89973 0.88365 0.93085 0.89237 1.86551 1.74623 1.15628 1.59102 1.22841 0.97076 1.00666 0.89871 1.61936 1.16148 1.34411 1.13966 1.22232 1.00187 0.89081 0.99331 1.19404 0.82875 0.93257 0.96398 1.21505 0.93275 1.47707 0.93677 0.92123 1.25899 0.96363 0.95057 1.02266 1.70086 1.02014 1.50831 1.34628 0.85330 0.78252 0.77834 0.79178 1.18890 1.20311 1.20304 1.20032 0.93979 0.95632 0.99316 1.20903 1.00368 0.93458 1.02831 1.21162 0.93738 0.98274 1.02187 0.90755 0.90931 0.90789 0.84900 0.85131 0.90257 0.90487 0.91775 0.92371 0.94859 0.90901 0.83984 0.93898 0.90216 0.77432 0.95015 0.91366 0.97022 0.92679 0.90540 1.02112 0.97768 0.92672 0.90491 0.91138 0.90901 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.10 -1.45 5.88 -19.87 -0.12 -1.56 16 3 C -0.14 -2.02 9.70 22.27 0.22 -1.80 16 4 C -0.12 -1.84 9.68 22.27 0.22 -1.63 16 5 C -0.10 -1.55 5.13 -19.86 -0.10 -1.65 16 6 C -0.07 -0.95 4.65 29.85 0.14 -0.81 16 7 C -0.10 -1.48 5.26 30.59 0.16 -1.32 16 8 C 0.06 0.97 5.68 86.30 0.49 1.46 16 9 N -0.69 -13.51 6.37 -513.90 -3.27 -16.79 16 10 C 0.04 0.82 5.35 86.30 0.46 1.28 16 11 C 0.13 3.54 3.13 30.60 0.10 3.64 16 12 H 0.09 2.52 6.33 -2.39 -0.02 2.50 16 13 O -0.55 -17.18 13.15 -148.98 -1.96 -19.13 16 14 C 0.02 0.85 4.60 86.31 0.40 1.25 16 15 N -0.54 -23.79 4.70 -927.02 -4.36 -28.15 16 16 C 0.04 1.58 9.14 127.69 1.17 2.75 16 17 C 0.21 11.24 4.72 85.56 0.40 11.64 16 18 C -0.52 -30.37 8.46 25.60 0.22 -30.15 16 19 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 20 C 0.00 0.11 5.46 84.65 0.46 0.58 16 21 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 22 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C -0.09 -1.42 5.88 -19.87 -0.12 -1.54 16 27 C -0.12 -1.52 9.22 71.24 0.66 -0.86 16 28 C -0.14 -2.08 9.36 22.27 0.21 -1.87 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 31 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 32 H 0.13 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.08 0.95 7.01 -2.39 -0.02 0.93 16 35 H 0.08 0.88 8.05 -2.39 -0.02 0.86 16 36 H 0.06 1.10 6.88 -2.39 -0.02 1.09 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.34 6.54 8.73 -89.69 -0.78 5.76 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.38 9.84 9.05 -74.05 -0.67 9.17 16 44 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 45 H 0.07 2.35 7.93 -2.39 -0.02 2.34 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.05 2.38 6.76 -2.38 -0.02 2.36 16 48 H 0.08 2.55 6.37 -2.39 -0.02 2.53 16 49 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 50 H 0.00 0.24 7.93 -2.39 -0.02 0.23 16 51 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 52 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 54 H 0.07 0.95 5.40 -2.38 -0.01 0.94 16 55 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -68.71 435.37 -2.21 -70.91 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.60 Total: 23.59 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 5.67 Total: -20.95 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -7.35 Total: -101.40 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.96 Total: -19.13 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.71 -2.21 -70.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591241643.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.091 kcal (2) G-P(sol) polarization free energy of solvation -68.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds