Wall clock time and date at job start Tue Mar 31 2020 17:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 110.99860 * 2 1 4 4 C 1.46902 * 110.99769 * 123.95082 * 2 1 3 5 5 C 1.52999 * 109.46892 * 169.99928 * 4 2 1 6 6 C 1.53002 * 109.47028 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46892 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00024 * 90.00043 * 7 6 5 9 9 C 1.50703 * 109.46954 * 90.38305 * 8 7 6 10 10 H 1.08001 * 120.00138 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00042 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99993 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00081 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47224 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46984 * 120.00121 * 13 11 9 16 16 H 1.48500 * 109.47234 * 239.99711 * 13 11 9 17 17 C 1.34773 * 120.00083 * 270.00148 * 7 6 5 18 18 O 1.21287 * 119.99890 * 5.16389 * 17 7 6 19 19 C 1.50703 * 120.00185 * 185.16997 * 17 7 6 20 20 H 1.09007 * 109.42904 * 26.23342 * 19 17 7 21 21 C 1.53113 * 109.42938 * 266.33215 * 19 17 7 22 22 C 1.53497 * 109.30912 * 170.02041 * 21 19 17 23 23 C 1.50709 * 108.06059 * 48.69932 * 22 21 19 24 24 C 1.33861 * 128.68335 * 164.27149 * 23 22 21 25 25 N 1.34426 * 107.79768 * 180.02562 * 24 23 22 26 26 C 1.30784 * 109.32044 * 359.97438 * 25 24 23 27 27 N 1.34402 * 108.55468 * 359.94691 * 26 25 24 28 28 C 1.46475 * 128.44396 * 180.17932 * 27 26 25 29 29 H 1.08999 * 109.47002 * 296.04632 * 1 2 3 30 30 H 1.09000 * 109.47509 * 56.05121 * 1 2 3 31 31 H 1.08997 * 109.46982 * 176.04892 * 1 2 3 32 32 H 1.09006 * 109.46985 * 183.95635 * 3 2 1 33 33 H 1.09005 * 109.46755 * 303.94971 * 3 2 1 34 34 H 1.08997 * 109.47600 * 63.95399 * 3 2 1 35 35 H 1.09002 * 109.47177 * 50.00183 * 4 2 1 36 36 H 1.09000 * 109.47091 * 289.99537 * 4 2 1 37 37 H 1.09002 * 109.47001 * 60.00147 * 5 4 2 38 38 H 1.09005 * 109.47242 * 300.00365 * 5 4 2 39 39 H 1.09002 * 109.47032 * 60.00260 * 6 5 4 40 40 H 1.09000 * 109.47100 * 299.99697 * 6 5 4 41 41 H 1.08996 * 109.47225 * 210.38573 * 8 7 6 42 42 H 1.09002 * 109.47158 * 330.38963 * 8 7 6 43 43 H 0.96996 * 120.00341 * 180.02562 * 12 11 9 44 44 H 1.09001 * 109.49935 * 289.97153 * 21 19 17 45 45 H 1.09001 * 109.50269 * 50.03726 * 21 19 17 46 46 H 1.09003 * 109.74298 * 168.33952 * 22 21 19 47 47 H 1.08999 * 109.74679 * 289.00715 * 22 21 19 48 48 H 1.07995 * 126.09590 * 0.05350 * 24 23 22 49 49 H 1.08006 * 125.72422 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.59940 * 42.86474 * 28 27 26 51 51 H 1.08995 * 109.59967 * 282.38932 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9704 6 6 4.0528 -1.7525 2.1556 7 7 5.4978 -1.9333 1.9957 8 6 6.4255 -0.9430 2.5478 9 6 6.7956 -1.3317 3.9561 10 1 6.3810 -2.2267 4.3959 11 6 7.6628 -0.5441 4.6833 12 7 8.1665 0.5465 4.1482 13 14 8.1210 -1.0256 6.4290 14 1 7.4245 -2.2852 6.7942 15 1 9.5894 -1.2290 6.5171 16 1 7.7141 0.0545 7.3634 17 6 5.9738 -3.0107 1.3407 18 8 5.2068 -3.7812 0.8030 19 6 7.4589 -3.2583 1.2766 20 1 7.9409 -2.7976 2.1390 21 6 8.0222 -2.6466 -0.0090 22 6 9.5560 -2.6772 0.0439 23 6 9.9818 -4.0650 0.4491 24 6 11.1905 -4.6317 0.3498 25 7 11.0994 -5.8818 0.8356 26 6 9.8729 -6.1037 1.2317 27 7 9.1447 -4.9960 1.0097 28 6 7.7259 -4.7670 1.2927 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9162 -0.8525 34 1 1.7044 1.8723 0.9232 35 1 1.5089 -1.7406 1.1757 36 1 1.7975 -0.2246 2.0628 37 1 3.9909 0.0194 0.9324 38 1 3.7024 -1.4966 0.0452 39 1 3.5664 -2.7272 2.1941 40 1 3.8549 -1.2108 3.0806 41 1 7.3247 -0.9051 1.9331 42 1 5.9486 0.0372 2.5550 43 1 8.7769 1.1004 4.6596 44 1 7.6762 -3.2219 -0.8677 45 1 7.6815 -1.6153 -0.1009 46 1 9.9631 -2.4393 -0.9388 47 1 9.9138 -1.9531 0.7758 48 1 12.0802 -4.1671 -0.0489 49 1 9.5067 -7.0227 1.6651 50 1 7.4787 -5.1723 2.2739 51 1 7.1178 -5.2532 0.5299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592945916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:17 Heat of formation + Delta-G solvation = 5.036449 kcal Electronic energy + Delta-G solvation = -29941.022353 eV Core-core repulsion = 26068.338773 eV Total energy + Delta-G solvation = -3872.683581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.27995 -41.09627 -38.72149 -37.28919 -36.87126 -34.77969 -33.97766 -33.09284 -31.49877 -29.26092 -28.81885 -28.49217 -27.42864 -25.60252 -24.93677 -24.04476 -23.06344 -22.33355 -21.78865 -20.40004 -19.60404 -18.67121 -18.37804 -17.73990 -17.28320 -16.69062 -16.52992 -16.25743 -16.15525 -15.98895 -15.53546 -15.23077 -14.98885 -14.95676 -14.80619 -14.57497 -14.46651 -14.20921 -14.03423 -13.58183 -13.35224 -13.22545 -13.17626 -12.96660 -12.82265 -12.74480 -12.64918 -12.58259 -12.42570 -12.33558 -12.09790 -12.03149 -11.92679 -11.69191 -11.48741 -10.94240 -10.78853 -10.57778 -10.42718 -9.51113 -9.32675 -9.25796 -8.23154 -6.36659 1.14729 1.36512 1.41754 1.48991 1.57297 1.83593 2.19760 2.25021 2.41043 3.03063 3.08343 3.40276 3.49727 3.63130 3.79683 3.91336 3.94525 4.07460 4.15934 4.23000 4.26685 4.32166 4.38587 4.41060 4.45298 4.49275 4.50713 4.61197 4.66115 4.74047 4.75548 4.79130 4.81042 4.86573 4.89572 4.99617 5.00009 5.01130 5.12801 5.14485 5.22873 5.28688 5.46316 5.63550 5.80027 5.81715 6.02470 6.04482 6.10856 6.29465 6.51486 6.78143 7.11251 7.22532 7.37255 8.82155 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008777 B = 0.003930 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.304204 B = 7123.280834 C = 9259.063177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.022 3.978 4 C 0.065 3.935 5 C -0.113 4.113 6 C 0.121 3.879 7 N -0.592 5.592 8 C 0.253 3.747 9 C -0.544 4.544 10 H 0.053 0.947 11 C 0.029 3.971 12 N -0.914 5.914 13 Si 0.945 3.055 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.279 1.279 17 C 0.528 3.472 18 O -0.584 6.584 19 C -0.118 4.118 20 H 0.100 0.900 21 C -0.101 4.101 22 C -0.038 4.038 23 C -0.029 4.029 24 C -0.044 4.044 25 N -0.530 5.530 26 C 0.179 3.821 27 N -0.454 5.454 28 C 0.129 3.871 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.022 0.978 43 H 0.267 0.733 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.080 0.920 48 H 0.184 0.816 49 H 0.233 0.767 50 H 0.098 0.902 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 -2.276 -7.301 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.126 4.126 4 C -0.064 4.064 5 C -0.152 4.152 6 C -0.002 4.002 7 N -0.321 5.321 8 C 0.132 3.868 9 C -0.583 4.583 10 H 0.071 0.929 11 C -0.172 4.172 12 N -0.552 5.552 13 Si 0.771 3.229 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.204 1.204 17 C 0.316 3.684 18 O -0.466 6.466 19 C -0.140 4.140 20 H 0.118 0.882 21 C -0.139 4.139 22 C -0.076 4.076 23 C -0.143 4.143 24 C -0.191 4.191 25 N -0.249 5.249 26 C -0.103 4.103 27 N -0.137 5.137 28 C 0.007 3.993 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.133 0.867 47 H 0.099 0.901 48 H 0.201 0.799 49 H 0.250 0.750 50 H 0.116 0.884 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.617 -3.281 -7.863 10.788 hybrid contribution -0.501 1.052 2.011 2.324 sum -7.118 -2.229 -5.852 9.480 Atomic orbital electron populations 1.22424 0.85978 1.02811 1.01087 1.61966 1.09131 1.14490 1.43310 1.22444 1.00811 0.88411 1.00980 1.21972 0.94285 0.98590 0.91511 1.21741 0.95398 0.99860 0.98160 1.21339 0.79989 1.00556 0.98328 1.48165 1.07519 1.23340 1.53082 1.19116 0.88136 0.86635 0.92866 1.21665 1.27553 1.09475 0.99582 0.92890 1.25509 0.95693 0.94692 1.01307 1.69983 1.31815 1.14794 1.38653 0.85697 0.77941 0.78379 0.80837 1.19524 1.20839 1.20432 1.20261 0.90224 0.80443 0.77514 1.90603 1.60002 1.48024 1.47990 1.21499 0.93570 0.96254 1.02653 0.88157 1.21484 0.95721 1.01763 0.94951 1.20238 0.94210 0.89582 1.03548 1.21510 0.91852 0.94724 1.06250 1.22134 0.97487 0.92010 1.07449 1.70455 1.18737 1.17708 1.17969 1.25381 0.87043 0.93380 1.04499 1.45492 1.10066 1.12516 1.45652 1.21698 0.78136 0.95648 1.03849 0.95278 0.90285 0.90952 0.92064 0.90133 0.95426 0.90219 0.94302 0.92465 0.92637 0.90973 0.90589 0.94756 0.96036 0.92349 0.90731 0.90440 0.86731 0.90142 0.79859 0.75045 0.88362 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.57 127.69 1.22 1.67 16 2 N -0.56 -13.26 5.02 -948.85 -4.76 -18.02 16 3 C 0.02 0.47 9.32 127.69 1.19 1.66 16 4 C 0.06 1.61 4.96 86.30 0.43 2.04 16 5 C -0.11 -3.37 5.46 30.59 0.17 -3.20 16 6 C 0.12 4.07 5.37 86.38 0.46 4.53 16 7 N -0.59 -22.62 2.46 -826.13 -2.03 -24.65 16 8 C 0.25 11.07 4.75 85.63 0.41 11.48 16 9 C -0.54 -26.36 8.61 25.60 0.22 -26.14 16 10 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 11 C 0.03 1.46 5.46 84.65 0.46 1.92 16 12 N -0.91 -47.79 13.29 21.45 0.28 -47.51 16 13 Si 0.95 40.45 29.54 68.60 2.03 42.48 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 17 C 0.53 19.57 6.64 87.66 0.58 20.15 16 18 O -0.58 -23.17 15.71 -3.05 -0.05 -23.22 16 19 C -0.12 -3.93 1.68 -11.43 -0.02 -3.95 16 20 H 0.10 3.92 6.01 -2.38 -0.01 3.90 16 21 C -0.10 -2.93 5.00 30.80 0.15 -2.77 16 22 C -0.04 -1.00 6.31 30.02 0.19 -0.81 16 23 C -0.03 -0.85 6.57 40.73 0.27 -0.59 16 24 C -0.04 -1.34 11.84 83.30 0.99 -0.35 16 25 N -0.53 -17.06 11.27 -200.97 -2.26 -19.32 16 26 C 0.18 5.03 12.66 180.38 2.28 7.31 16 27 N -0.45 -13.42 3.13 -514.97 -1.61 -15.03 16 28 C 0.13 3.78 6.10 86.46 0.53 4.31 16 29 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 31 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 32 H 0.06 1.46 6.47 -2.38 -0.02 1.44 16 33 H 0.08 1.45 8.12 -2.38 -0.02 1.43 16 34 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 1.89 8.06 -2.39 -0.02 1.87 16 36 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 37 H 0.06 1.79 6.55 -2.39 -0.02 1.77 16 38 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.07 2.41 7.50 -2.39 -0.02 2.39 16 40 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 41 H 0.03 1.55 5.92 -2.39 -0.01 1.53 16 42 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 43 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 44 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 45 H 0.08 2.30 7.49 -2.39 -0.02 2.28 16 46 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.18 4.57 8.06 -2.91 -0.02 4.54 16 49 H 0.23 4.59 8.06 -2.91 -0.02 4.57 16 50 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 51 H 0.10 2.86 7.54 -2.39 -0.02 2.84 16 Total: -1.00 -60.33 405.41 2.02 -58.30 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.90 Total: 29.70 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 9.53 Total: 17.26 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -10.38 Total: -124.53 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -60.33 2.02 -58.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592945916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.339 kcal (2) G-P(sol) polarization free energy of solvation -60.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds