Wall clock time and date at job start Tue Mar 31 2020 17:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99791 * 2 1 4 4 C 1.46894 * 111.00355 * 123.95533 * 2 1 3 5 5 C 1.52995 * 109.47357 * 66.04967 * 4 2 1 6 6 C 1.53002 * 109.47427 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47088 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99537 * 269.99330 * 7 6 5 9 9 C 1.50699 * 109.47106 * 270.00004 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99824 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99715 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47172 * 90.00201 * 13 11 9 15 15 H 1.48505 * 109.46881 * 209.99904 * 13 11 9 16 16 H 1.48497 * 109.47562 * 329.99812 * 13 11 9 17 17 C 1.34777 * 120.00199 * 89.99979 * 7 6 5 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 7 6 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 7 21 21 C 1.34951 * 126.03900 * 124.71786 * 20 19 17 22 22 C 1.35323 * 107.74633 * 179.83813 * 21 20 19 23 23 C 1.50696 * 126.03855 * 180.15772 * 22 21 20 24 24 C 1.52998 * 117.49858 * 188.90262 * 23 22 21 25 25 C 1.52993 * 60.00158 * 252.51134 * 24 23 22 26 26 C 1.39870 * 107.91839 * 0.42236 * 22 21 20 27 27 N 1.30833 * 108.20378 * 359.73723 * 26 22 21 28 28 H 1.09002 * 109.47091 * 296.03896 * 1 2 3 29 29 H 1.08998 * 109.47672 * 56.04726 * 1 2 3 30 30 H 1.09005 * 109.47066 * 176.05092 * 1 2 3 31 31 H 1.08991 * 109.47299 * 183.95987 * 3 2 1 32 32 H 1.09004 * 109.46995 * 303.96018 * 3 2 1 33 33 H 1.08995 * 109.46972 * 63.95357 * 3 2 1 34 34 H 1.09006 * 109.47229 * 306.04487 * 4 2 1 35 35 H 1.09005 * 109.46948 * 186.04692 * 4 2 1 36 36 H 1.08999 * 109.46986 * 59.99459 * 5 4 2 37 37 H 1.09005 * 109.46868 * 299.99774 * 5 4 2 38 38 H 1.09001 * 109.46980 * 59.99515 * 6 5 4 39 39 H 1.09005 * 109.46685 * 299.99608 * 6 5 4 40 40 H 1.08994 * 109.46996 * 30.00327 * 8 7 6 41 41 H 1.09001 * 109.46578 * 150.00190 * 8 7 6 42 42 H 0.97009 * 119.99797 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 7 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 7 45 45 H 1.07995 * 126.12414 * 359.97438 * 21 20 19 46 46 H 1.08999 * 115.55485 * 334.61538 * 23 22 21 47 47 H 1.09000 * 117.49856 * 0.02562 * 24 23 22 48 48 H 1.09003 * 117.49699 * 145.02245 * 24 23 22 49 49 H 1.08998 * 117.50287 * 252.50875 * 25 24 23 50 50 H 1.09010 * 117.51870 * 107.48083 * 25 24 23 51 51 H 1.07997 * 125.89927 * 179.76629 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 6 2.1795 -3.0403 2.1553 7 7 1.8305 -4.4541 1.9954 8 6 0.5736 -4.9653 2.5478 9 6 0.8020 -5.4415 3.9592 10 1 1.7849 -5.3702 4.4008 11 6 -0.2441 -5.9684 4.6868 12 7 -0.0449 -6.3835 5.9186 13 14 -1.9441 -6.0924 3.9226 14 1 -2.0853 -7.4033 3.2395 15 1 -2.9744 -5.9747 4.9857 16 1 -2.1243 -4.9978 2.9354 17 6 2.6659 -5.2845 1.3403 18 8 3.7063 -4.8611 0.8828 19 6 2.3040 -6.7375 1.1705 20 7 3.3635 -7.4206 0.4244 21 6 4.0377 -8.5179 0.8277 22 6 4.9257 -8.8362 -0.1426 23 6 5.8885 -9.9952 -0.1179 24 6 6.9488 -10.0565 -1.2191 25 6 5.7721 -11.0342 -1.2349 26 6 4.7962 -7.8957 -1.1698 27 7 3.8601 -7.0468 -0.8310 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0826 1.3434 -0.0710 32 1 1.5896 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 2.0659 -2.6212 0.0450 37 1 0.5473 -2.3475 0.9323 38 1 1.7448 -2.6614 3.0803 39 1 3.2638 -2.9354 2.1937 40 1 -0.1726 -4.1708 2.5486 41 1 0.2195 -5.7957 1.9369 42 1 -0.7809 -6.7538 6.4306 43 1 2.1928 -7.2012 2.1507 44 1 1.3650 -6.8164 0.6227 45 1 3.8929 -9.0484 1.7572 46 1 6.1704 -10.3512 0.8730 47 1 6.9503 -9.2582 -1.9613 48 1 7.9287 -10.4526 -0.9527 49 1 5.9779 -12.0736 -0.9790 50 1 4.9989 -10.8796 -1.9876 51 1 5.3695 -7.8743 -2.0848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596926062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:53 Heat of formation + Delta-G solvation = 78.762536 kcal Electronic energy + Delta-G solvation = -28877.876890 eV Core-core repulsion = 25008.390312 eV Total energy + Delta-G solvation = -3869.486578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.04138 -39.25529 -37.64931 -36.94358 -35.36170 -33.20288 -32.64160 -31.61626 -29.86612 -28.14835 -27.66997 -27.55915 -25.53511 -22.80113 -22.76370 -22.67820 -22.29561 -20.92159 -20.60262 -19.70400 -18.32598 -17.18685 -16.91643 -16.56983 -15.82831 -15.54457 -15.42967 -15.15493 -14.85148 -14.69782 -14.30479 -14.14197 -13.98272 -13.73328 -13.64603 -12.96151 -12.68226 -12.57205 -12.45162 -12.34101 -12.14137 -12.02634 -11.86112 -11.77426 -11.62122 -11.52204 -11.33700 -11.23875 -11.01633 -10.82847 -10.76491 -10.41205 -10.40911 -10.25334 -10.13062 -9.76626 -9.53142 -8.94733 -8.83952 -8.39753 -7.96156 -7.89114 -6.34918 -4.38721 2.16308 2.71983 2.96484 3.07305 3.15743 3.16083 3.18571 3.63785 3.99449 4.06155 4.14409 4.62230 4.91460 4.95554 4.98622 5.02102 5.05888 5.09131 5.15532 5.20067 5.25018 5.32583 5.42008 5.48002 5.48808 5.51978 5.58503 5.60926 5.63167 5.71841 5.74977 5.81174 5.88323 5.92180 5.93155 6.06790 6.11870 6.21414 6.25891 6.36774 6.39715 6.48195 6.56070 6.89864 6.98349 7.00501 7.14776 7.27210 7.30504 7.95524 8.02737 8.25618 8.68096 8.77598 9.23644 10.77194 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007452 B = 0.003559 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.573672 B = 7864.971528 C =10942.398122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.125 3.875 7 N -0.588 5.588 8 C 0.206 3.794 9 C -0.549 4.549 10 H 0.080 0.920 11 C 0.079 3.921 12 N -0.886 5.886 13 Si 0.869 3.131 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.263 1.263 17 C 0.508 3.492 18 O -0.538 6.538 19 C 0.116 3.884 20 N -0.351 5.351 21 C 0.065 3.935 22 C -0.216 4.216 23 C -0.066 4.066 24 C -0.178 4.178 25 C -0.179 4.179 26 C 0.039 3.961 27 N -0.265 5.265 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.268 0.732 43 H 0.138 0.862 44 H 0.109 0.891 45 H 0.173 0.827 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.512 1.020 -10.974 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.319 5.319 8 C 0.085 3.915 9 C -0.588 4.588 10 H 0.098 0.902 11 C -0.125 4.125 12 N -0.523 5.523 13 Si 0.695 3.305 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.188 1.188 17 C 0.294 3.706 18 O -0.415 6.415 19 C -0.009 4.009 20 N -0.133 5.133 21 C -0.081 4.081 22 C -0.228 4.228 23 C -0.086 4.086 24 C -0.215 4.215 25 C -0.216 4.216 26 C -0.148 4.148 27 N -0.085 5.085 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.156 0.844 44 H 0.127 0.873 45 H 0.190 0.810 46 H 0.125 0.875 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.312 2.074 -11.718 12.657 hybrid contribution -0.985 -0.422 1.011 1.473 sum 3.328 1.652 -10.707 11.333 Atomic orbital electron populations 1.22436 0.87496 1.02628 1.00133 1.61963 1.08026 1.13502 1.43730 1.22366 1.00794 0.88960 1.00202 1.22068 1.00207 0.93752 0.90911 1.21951 1.01314 0.93468 1.00107 1.21226 1.00871 0.80279 0.97497 1.47817 1.21871 1.08260 1.53990 1.19862 0.81718 0.95018 0.94929 1.21382 0.98551 1.42430 0.96393 0.90232 1.24878 0.98681 0.94366 0.94599 1.69884 1.32667 1.40459 1.09301 0.86956 0.84512 0.79353 0.79638 1.19710 1.20742 1.18804 1.20220 0.84144 0.87590 0.78624 1.90701 1.24661 1.77072 1.49067 1.21678 0.88561 0.92499 0.98146 1.48115 1.29477 1.21124 1.14543 1.22241 0.94799 0.90791 1.00266 1.19164 1.04467 1.01984 0.97179 1.20122 0.98231 0.95515 0.94686 1.22935 0.93918 1.02479 1.02190 1.23001 1.01043 0.95388 1.02181 1.23616 0.97905 0.93414 0.99851 1.77458 1.13806 1.21367 0.95882 0.95661 0.91723 0.90904 0.91387 0.91601 0.95805 0.94626 0.90650 0.90867 0.91901 0.90231 0.90677 0.94476 0.95491 0.92182 0.84409 0.87338 0.80992 0.87526 0.88803 0.88934 0.89047 0.88908 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.06 0.56 0.80 16 2 N -0.55 -7.00 5.02 -251.26 -1.26 -8.26 16 3 C 0.03 0.26 9.57 60.07 0.57 0.83 16 4 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 5 C -0.13 -2.00 5.46 -26.73 -0.15 -2.14 16 6 C 0.13 2.18 5.41 -4.04 -0.02 2.16 16 7 N -0.59 -11.45 2.46 -175.05 -0.43 -11.88 16 8 C 0.21 4.22 4.04 -5.19 -0.02 4.20 16 9 C -0.55 -13.48 9.86 -34.44 -0.34 -13.82 16 10 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 11 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.89 -24.46 13.96 55.43 0.77 -23.69 16 13 Si 0.87 18.65 27.47 -169.99 -4.67 13.98 16 14 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 17 C 0.51 10.22 7.70 -10.98 -0.08 10.14 16 18 O -0.54 -12.26 15.29 5.55 0.08 -12.17 16 19 C 0.12 2.02 5.54 -5.20 -0.03 2.00 16 20 N -0.35 -6.20 3.40 -62.55 -0.21 -6.41 16 21 C 0.07 0.99 11.36 -17.22 -0.20 0.80 16 22 C -0.22 -3.10 5.76 -105.05 -0.61 -3.70 16 23 C -0.07 -0.75 6.25 -91.77 -0.57 -1.32 16 24 C -0.18 -1.72 10.02 -26.74 -0.27 -1.99 16 25 C -0.18 -1.73 10.23 -26.73 -0.27 -2.01 16 26 C 0.04 0.60 11.35 -17.37 -0.20 0.41 16 27 N -0.26 -4.94 11.64 30.62 0.36 -4.58 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 38 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 39 H 0.07 1.36 7.42 -51.93 -0.39 0.98 16 40 H 0.04 0.76 7.13 -51.93 -0.37 0.39 16 41 H 0.03 0.52 5.86 -51.93 -0.30 0.22 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.14 2.33 7.96 -51.93 -0.41 1.92 16 44 H 0.11 1.72 7.40 -51.93 -0.38 1.34 16 45 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 46 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.09 0.89 6.97 -51.93 -0.36 0.53 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 51 H 0.17 2.16 7.19 -52.49 -0.38 1.78 16 LS Contribution 415.29 15.07 6.26 6.26 Total: -1.00 -31.14 415.29 -9.61 -40.74 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.77 Total: 6.98 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.74 Total: -0.96 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.77 Total: -54.83 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.67 Total: 13.98 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.14 -9.61 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.507 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds