Wall clock time and date at job start Tue Mar 31 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99791 * 2 1 4 4 C 1.46894 * 111.00355 * 123.95533 * 2 1 3 5 5 C 1.52995 * 109.47357 * 66.04967 * 4 2 1 6 6 C 1.53002 * 109.47427 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47088 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99537 * 269.99330 * 7 6 5 9 9 C 1.50699 * 109.47106 * 270.00004 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99824 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99715 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47172 * 90.00201 * 13 11 9 15 15 H 1.48505 * 109.46881 * 209.99904 * 13 11 9 16 16 H 1.48497 * 109.47562 * 329.99812 * 13 11 9 17 17 C 1.34777 * 120.00199 * 89.99979 * 7 6 5 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 7 6 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 7 21 21 C 1.34951 * 126.03900 * 124.71786 * 20 19 17 22 22 C 1.35323 * 107.74633 * 179.83813 * 21 20 19 23 23 C 1.50696 * 126.03855 * 180.15772 * 22 21 20 24 24 C 1.52998 * 117.49858 * 188.90262 * 23 22 21 25 25 C 1.52993 * 60.00158 * 252.51134 * 24 23 22 26 26 C 1.39870 * 107.91839 * 0.42236 * 22 21 20 27 27 N 1.30833 * 108.20378 * 359.73723 * 26 22 21 28 28 H 1.09002 * 109.47091 * 296.03896 * 1 2 3 29 29 H 1.08998 * 109.47672 * 56.04726 * 1 2 3 30 30 H 1.09005 * 109.47066 * 176.05092 * 1 2 3 31 31 H 1.08991 * 109.47299 * 183.95987 * 3 2 1 32 32 H 1.09004 * 109.46995 * 303.96018 * 3 2 1 33 33 H 1.08995 * 109.46972 * 63.95357 * 3 2 1 34 34 H 1.09006 * 109.47229 * 306.04487 * 4 2 1 35 35 H 1.09005 * 109.46948 * 186.04692 * 4 2 1 36 36 H 1.08999 * 109.46986 * 59.99459 * 5 4 2 37 37 H 1.09005 * 109.46868 * 299.99774 * 5 4 2 38 38 H 1.09001 * 109.46980 * 59.99515 * 6 5 4 39 39 H 1.09005 * 109.46685 * 299.99608 * 6 5 4 40 40 H 1.08994 * 109.46996 * 30.00327 * 8 7 6 41 41 H 1.09001 * 109.46578 * 150.00190 * 8 7 6 42 42 H 0.97009 * 119.99797 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 7 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 7 45 45 H 1.07995 * 126.12414 * 359.97438 * 21 20 19 46 46 H 1.08999 * 115.55485 * 334.61538 * 23 22 21 47 47 H 1.09000 * 117.49856 * 0.02562 * 24 23 22 48 48 H 1.09003 * 117.49699 * 145.02245 * 24 23 22 49 49 H 1.08998 * 117.50287 * 252.50875 * 25 24 23 50 50 H 1.09010 * 117.51870 * 107.48083 * 25 24 23 51 51 H 1.07997 * 125.89927 * 179.76629 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 6 2.1795 -3.0403 2.1553 7 7 1.8305 -4.4541 1.9954 8 6 0.5736 -4.9653 2.5478 9 6 0.8020 -5.4415 3.9592 10 1 1.7849 -5.3702 4.4008 11 6 -0.2441 -5.9684 4.6868 12 7 -0.0449 -6.3835 5.9186 13 14 -1.9441 -6.0924 3.9226 14 1 -2.0853 -7.4033 3.2395 15 1 -2.9744 -5.9747 4.9857 16 1 -2.1243 -4.9978 2.9354 17 6 2.6659 -5.2845 1.3403 18 8 3.7063 -4.8611 0.8828 19 6 2.3040 -6.7375 1.1705 20 7 3.3635 -7.4206 0.4244 21 6 4.0377 -8.5179 0.8277 22 6 4.9257 -8.8362 -0.1426 23 6 5.8885 -9.9952 -0.1179 24 6 6.9488 -10.0565 -1.2191 25 6 5.7721 -11.0342 -1.2349 26 6 4.7962 -7.8957 -1.1698 27 7 3.8601 -7.0468 -0.8310 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0826 1.3434 -0.0710 32 1 1.5896 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 2.0659 -2.6212 0.0450 37 1 0.5473 -2.3475 0.9323 38 1 1.7448 -2.6614 3.0803 39 1 3.2638 -2.9354 2.1937 40 1 -0.1726 -4.1708 2.5486 41 1 0.2195 -5.7957 1.9369 42 1 -0.7809 -6.7538 6.4306 43 1 2.1928 -7.2012 2.1507 44 1 1.3650 -6.8164 0.6227 45 1 3.8929 -9.0484 1.7572 46 1 6.1704 -10.3512 0.8730 47 1 6.9503 -9.2582 -1.9613 48 1 7.9287 -10.4526 -0.9527 49 1 5.9779 -12.0736 -0.9790 50 1 4.9989 -10.8796 -1.9876 51 1 5.3695 -7.8743 -2.0848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596926062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:52 Heat of formation + Delta-G solvation = 60.216066 kcal Electronic energy + Delta-G solvation = -28878.681125 eV Core-core repulsion = 25008.390312 eV Total energy + Delta-G solvation = -3870.290813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.26807 -40.78933 -38.69114 -37.82101 -36.95768 -34.82601 -34.18316 -32.98171 -31.04795 -29.86888 -28.89078 -28.50048 -26.76159 -24.52690 -23.91886 -23.75240 -23.10225 -22.07720 -21.78506 -20.88348 -19.79083 -19.07603 -18.34265 -17.93310 -17.09579 -16.71297 -16.58758 -16.27475 -16.04714 -15.93378 -15.81758 -15.37163 -15.04788 -14.95150 -14.85503 -14.64150 -14.18894 -13.88887 -13.71994 -13.48486 -13.29925 -13.23636 -13.18672 -12.83995 -12.70741 -12.63501 -12.56980 -12.37407 -12.34650 -12.24413 -12.02283 -11.73915 -11.70949 -11.54308 -11.38114 -11.10803 -11.04028 -10.80037 -10.29107 -9.53022 -9.33963 -9.09695 -8.30776 -6.39788 0.93482 1.40916 1.43633 1.46891 1.52312 1.58471 1.83957 2.18185 2.33972 2.99713 3.03670 3.22662 3.40790 3.69261 3.89269 3.99392 4.02363 4.08428 4.13526 4.14356 4.19750 4.29385 4.32319 4.34609 4.41954 4.47993 4.56162 4.57061 4.61765 4.66634 4.70888 4.76017 4.78430 4.85479 4.90883 4.97791 4.98980 5.09467 5.10826 5.18836 5.21389 5.39580 5.40958 5.42993 5.60528 5.75372 6.01864 6.05010 6.08908 6.14421 6.50859 6.67345 6.80203 7.15132 7.28865 8.84889 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007452 B = 0.003559 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.573672 B = 7864.971528 C =10942.398122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.566 5.566 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.112 4.112 6 C 0.124 3.876 7 N -0.590 5.590 8 C 0.214 3.786 9 C -0.545 4.545 10 H 0.033 0.967 11 C 0.026 3.974 12 N -0.938 5.938 13 Si 0.935 3.065 14 H -0.258 1.258 15 H -0.289 1.289 16 H -0.239 1.239 17 C 0.503 3.497 18 O -0.569 6.569 19 C 0.120 3.880 20 N -0.367 5.367 21 C 0.050 3.950 22 C -0.211 4.211 23 C -0.086 4.086 24 C -0.171 4.171 25 C -0.168 4.168 26 C 0.038 3.962 27 N -0.311 5.311 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.269 0.731 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.194 0.806 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 0.689 -12.672 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.290 5.290 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.151 4.151 6 C 0.000 4.000 7 N -0.321 5.321 8 C 0.092 3.908 9 C -0.583 4.583 10 H 0.051 0.949 11 C -0.173 4.173 12 N -0.577 5.577 13 Si 0.758 3.242 14 H -0.183 1.183 15 H -0.214 1.214 16 H -0.162 1.162 17 C 0.290 3.710 18 O -0.449 6.449 19 C -0.004 4.004 20 N -0.149 5.149 21 C -0.095 4.095 22 C -0.222 4.222 23 C -0.105 4.105 24 C -0.208 4.208 25 C -0.205 4.205 26 C -0.148 4.148 27 N -0.131 5.131 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.158 0.842 44 H 0.144 0.856 45 H 0.211 0.789 46 H 0.134 0.866 47 H 0.112 0.888 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.106 0.894 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.477 1.755 -13.437 13.990 hybrid contribution -0.573 -0.320 1.559 1.692 sum 2.904 1.435 -11.878 12.312 Atomic orbital electron populations 1.22461 0.86698 1.02430 1.01093 1.61949 1.08941 1.14873 1.43264 1.22417 1.00929 0.87764 1.01172 1.21954 1.00241 0.92484 0.91714 1.21743 1.01104 0.94487 0.97743 1.21306 1.00246 0.79835 0.98595 1.47903 1.21630 1.09040 1.53532 1.19746 0.82275 0.95962 0.92792 1.21468 0.96545 1.42061 0.98245 0.94875 1.25714 1.03022 0.93835 0.94769 1.70041 1.34107 1.42278 1.11288 0.85901 0.78651 0.80652 0.79035 1.18298 1.21448 1.16225 1.20718 0.83616 0.88690 0.77956 1.90673 1.25922 1.77878 1.50425 1.21635 0.89543 0.90637 0.98622 1.48134 1.30176 1.21929 1.14635 1.22775 0.94821 0.90460 1.01452 1.19527 1.04196 1.02299 0.96211 1.20214 0.98915 0.95440 0.95980 1.23043 0.94452 1.02383 1.00963 1.23039 1.00749 0.95986 1.00717 1.24117 0.97081 0.92816 1.00832 1.77386 1.15605 1.23201 0.96905 0.95190 0.90161 0.91782 0.91281 0.90170 0.95149 0.93927 0.90840 0.93093 0.91402 0.90119 0.91976 0.93288 0.93203 0.92187 0.84235 0.85634 0.78881 0.86628 0.88795 0.87304 0.87298 0.89415 0.78510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.32 127.69 1.19 1.64 16 2 N -0.57 -13.68 5.02 -948.86 -4.76 -18.44 16 3 C 0.03 0.47 9.57 127.69 1.22 1.69 16 4 C 0.06 1.68 4.96 86.30 0.43 2.11 16 5 C -0.11 -3.43 5.46 30.59 0.17 -3.26 16 6 C 0.12 4.38 5.41 86.38 0.47 4.85 16 7 N -0.59 -23.14 2.46 -826.14 -2.03 -25.17 16 8 C 0.21 8.53 4.04 85.63 0.35 8.87 16 9 C -0.54 -27.03 9.86 25.60 0.25 -26.78 16 10 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 11 C 0.03 1.34 5.47 84.66 0.46 1.80 16 12 N -0.94 -52.90 13.96 21.45 0.30 -52.60 16 13 Si 0.93 37.26 27.47 68.60 1.88 39.14 16 14 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 15 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.24 -8.54 6.54 99.48 0.65 -7.89 16 17 C 0.50 20.58 7.70 87.66 0.68 21.26 16 18 O -0.57 -26.74 15.29 -3.04 -0.05 -26.78 16 19 C 0.12 4.21 5.54 85.64 0.47 4.69 16 20 N -0.37 -13.00 3.40 -351.81 -1.20 -14.19 16 21 C 0.05 1.50 11.36 83.54 0.95 2.45 16 22 C -0.21 -5.86 5.76 -20.14 -0.12 -5.97 16 23 C -0.09 -1.80 6.25 -11.54 -0.07 -1.87 16 24 C -0.17 -2.91 10.02 30.59 0.31 -2.60 16 25 C -0.17 -2.85 10.23 30.59 0.31 -2.53 16 26 C 0.04 1.16 11.35 85.24 0.97 2.13 16 27 N -0.31 -11.64 11.64 -57.03 -0.66 -12.31 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.06 1.44 6.47 -2.38 -0.02 1.43 16 31 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 33 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.04 1.05 8.12 -2.38 -0.02 1.03 16 35 H 0.07 1.92 8.06 -2.38 -0.02 1.90 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 2.00 6.55 -2.38 -0.02 1.99 16 38 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 39 H 0.06 2.35 7.42 -2.38 -0.02 2.33 16 40 H 0.05 1.88 7.13 -2.39 -0.02 1.86 16 41 H 0.05 1.80 5.86 -2.39 -0.01 1.79 16 42 H 0.27 14.23 8.31 -92.70 -0.77 13.45 16 43 H 0.14 4.76 7.96 -2.38 -0.02 4.74 16 44 H 0.13 3.86 7.40 -2.39 -0.02 3.85 16 45 H 0.19 4.69 8.06 -2.91 -0.02 4.66 16 46 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.09 1.59 6.97 -2.39 -0.02 1.57 16 48 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 51 H 0.20 4.70 7.19 -2.91 -0.02 4.68 16 Total: -1.00 -68.84 415.29 2.36 -66.48 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.84 Total: 35.41 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 8.03 Total: 8.47 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -8.35 Total: -122.71 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 1.88 Total: 39.14 kcal Total: -68.84 2.36 -66.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.696 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds