Wall clock time and date at job start Tue Mar 31 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00724 * 2 1 4 4 C 1.52992 * 109.47788 * 184.89802 * 3 2 1 5 5 N 1.46903 * 109.47260 * 67.58561 * 4 3 2 6 6 C 1.46898 * 111.00222 * 287.14284 * 5 4 3 7 7 C 1.50704 * 109.47149 * 301.44892 * 6 5 4 8 8 H 1.08004 * 119.99900 * 4.36819 * 7 6 5 9 9 C 1.37874 * 120.00281 * 184.37432 * 7 6 5 10 10 N 1.31517 * 119.99728 * 5.06248 * 9 7 6 11 11 Si 1.86791 * 120.00327 * 185.06531 * 9 7 6 12 12 H 1.48503 * 109.47114 * 5.00133 * 11 9 7 13 13 H 1.48500 * 109.47459 * 125.00113 * 11 9 7 14 14 H 1.48502 * 109.47149 * 245.00150 * 11 9 7 15 15 C 1.38584 * 110.99820 * 163.18816 * 5 4 3 16 16 N 1.31221 * 126.47517 * 16.46486 * 15 5 4 17 17 N 1.28527 * 109.85631 * 179.97438 * 16 15 5 18 18 C 1.30294 * 110.05735 * 359.71183 * 17 16 15 19 19 C 1.50696 * 126.34906 * 180.30988 * 18 17 16 20 20 C 1.53785 * 113.61049 * 39.29474 * 19 18 17 21 21 C 1.53952 * 87.02035 * 220.04341 * 20 19 18 22 22 C 1.53782 * 87.11118 * 25.36532 * 21 20 19 23 23 N 1.36456 * 126.46884 * 196.43240 * 15 5 4 24 24 C 1.46492 * 127.13911 * 0.02897 * 23 15 5 25 25 C 1.53002 * 109.47466 * 85.04114 * 24 23 15 26 26 C 1.52998 * 117.49917 * 243.62413 * 25 24 23 27 27 C 1.52998 * 117.49871 * 175.00082 * 25 24 23 28 28 H 1.08995 * 109.47171 * 184.96858 * 1 2 3 29 29 H 1.09004 * 109.46779 * 304.97270 * 1 2 3 30 30 H 1.08999 * 109.46527 * 64.96616 * 1 2 3 31 31 H 1.09003 * 109.47246 * 64.89177 * 3 2 1 32 32 H 1.09006 * 109.46723 * 304.89631 * 3 2 1 33 33 H 1.09008 * 109.47018 * 307.59018 * 4 3 2 34 34 H 1.08999 * 109.47731 * 187.59095 * 4 3 2 35 35 H 1.09005 * 109.46837 * 61.44333 * 6 5 4 36 36 H 1.08994 * 109.47432 * 181.44779 * 6 5 4 37 37 H 0.97005 * 119.99799 * 179.97438 * 10 9 7 38 38 H 1.08999 * 112.84921 * 170.48821 * 19 18 17 39 39 H 1.08998 * 113.61887 * 334.56631 * 20 19 18 40 40 H 1.09006 * 113.61173 * 105.47249 * 20 19 18 41 41 H 1.08995 * 113.54284 * 270.81102 * 21 20 19 42 42 H 1.09003 * 113.74421 * 139.93976 * 21 20 19 43 43 H 1.08998 * 113.61864 * 220.08562 * 22 21 20 44 44 H 1.09002 * 113.61336 * 89.18407 * 22 21 20 45 45 H 1.09004 * 109.47424 * 205.04270 * 24 23 15 46 46 H 1.09004 * 109.47388 * 325.04302 * 24 23 15 47 47 H 1.08992 * 115.54577 * 29.33172 * 25 24 23 48 48 H 1.09000 * 117.49973 * 359.97438 * 26 25 24 49 49 H 1.08997 * 117.49811 * 145.01881 * 26 25 24 50 50 H 1.09003 * 117.49967 * 214.97960 * 27 25 24 51 51 H 1.08998 * 117.50215 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5307 1.1867 -0.1232 5 7 3.8752 0.6670 -1.4533 6 6 3.5481 -0.7610 -1.5615 7 6 4.2956 -1.5293 -0.5023 8 1 4.8928 -1.0021 0.2270 9 6 4.2172 -2.9053 -0.4641 10 7 3.5725 -3.5537 -1.4095 11 14 5.0266 -3.8487 0.9302 12 1 5.5785 -2.8904 1.9213 13 1 4.0194 -4.7179 1.5899 14 1 6.1253 -4.6877 0.3879 15 6 5.2109 0.8940 -1.7445 16 7 6.1543 1.2050 -0.8871 17 7 7.2748 1.3423 -1.5016 18 6 7.1153 1.1229 -2.7760 19 6 8.1879 1.1788 -3.8330 20 6 9.5343 0.5930 -3.3758 21 6 10.2047 1.7584 -4.1258 22 6 8.8968 2.5407 -3.9200 23 7 5.7936 0.8356 -2.9770 24 6 5.1401 0.5236 -4.2504 25 6 4.5239 1.7971 -4.8330 26 6 3.0023 1.8389 -4.9872 27 6 3.8931 1.7043 -6.2238 28 1 -0.3633 -1.0237 0.0890 29 1 -0.3633 0.5891 0.8421 30 1 -0.3632 0.4349 -0.9312 31 1 1.7599 1.8147 0.9306 32 1 1.6211 1.8764 -0.8429 33 1 3.9051 0.5055 0.6412 34 1 3.9840 2.1687 0.0118 35 1 2.4759 -0.8997 -1.4223 36 1 3.8367 -1.1262 -2.5471 37 1 3.5177 -4.5218 -1.3829 38 1 7.8516 0.7991 -4.7978 39 1 9.6811 0.6264 -2.2963 40 1 9.7525 -0.3856 -3.8036 41 1 10.4210 1.5367 -5.1708 42 1 11.0572 2.1870 -3.5988 43 1 8.6009 3.1324 -4.7863 44 1 8.8689 3.1077 -2.9895 45 1 5.8761 0.1240 -4.9482 46 1 4.3569 -0.2163 -4.0852 47 1 5.0293 2.7264 -4.5705 48 1 2.4403 0.9591 -4.6741 49 1 2.5062 2.7960 -4.8260 50 1 3.9832 2.5729 -6.8762 51 1 3.9175 0.7362 -6.7240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597409815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:53 Heat of formation + Delta-G solvation = 93.853532 kcal Electronic energy + Delta-G solvation = -30970.136790 eV Core-core repulsion = 27101.304607 eV Total energy + Delta-G solvation = -3868.832183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.25265 -38.51200 -37.80580 -37.56849 -36.00341 -33.74307 -32.47480 -30.00354 -28.86140 -27.42888 -26.56075 -25.59676 -25.53508 -25.20722 -22.83882 -22.35585 -21.97021 -21.15599 -20.44006 -19.72432 -18.73845 -17.12338 -16.55215 -16.12308 -15.80638 -15.67436 -15.46162 -15.08147 -14.77652 -14.60949 -14.29441 -14.14412 -14.05620 -13.36419 -13.24642 -12.52876 -12.50169 -12.33485 -12.23212 -11.81032 -11.72119 -11.60923 -11.47914 -11.22155 -11.07505 -10.96862 -10.90749 -10.75532 -10.72349 -10.49553 -10.43486 -10.33104 -10.27502 -10.04959 -9.92074 -9.83784 -9.49960 -9.34847 -9.03540 -8.51273 -8.32891 -7.29532 -6.00614 -4.02597 2.50850 2.91074 3.33163 3.40608 3.49195 3.63752 3.80742 4.38734 4.49523 4.58159 4.61945 4.70288 4.73486 4.79641 4.86440 4.97554 5.03144 5.11712 5.28463 5.35081 5.35902 5.53024 5.55607 5.61484 5.68471 5.70655 5.72196 5.78746 5.84402 5.89685 5.92293 5.93240 5.95006 6.02401 6.05144 6.07387 6.12276 6.12485 6.21551 6.24866 6.42097 6.65024 6.76750 6.79915 7.13171 7.41357 7.60999 7.68732 7.78672 7.96595 8.25883 8.27996 9.02616 9.58105 9.62189 11.07043 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.004981 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.755585 B = 5619.819567 C = 7067.450017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.070 3.930 4 C 0.073 3.927 5 N -0.462 5.462 6 C 0.188 3.812 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.069 3.931 10 N -0.895 5.895 11 Si 0.887 3.113 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.287 1.287 15 C 0.412 3.588 16 N -0.338 5.338 17 N -0.286 5.286 18 C 0.162 3.838 19 C -0.022 4.022 20 C -0.122 4.122 21 C -0.141 4.141 22 C -0.122 4.122 23 N -0.471 5.471 24 C 0.144 3.856 25 C -0.165 4.165 26 C -0.162 4.162 27 C -0.176 4.176 28 H 0.080 0.920 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.259 0.741 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 11.494 -9.420 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C -0.007 4.007 4 C -0.055 4.055 5 N -0.186 5.186 6 C 0.065 3.935 7 C -0.572 4.572 8 H 0.083 0.917 9 C -0.133 4.133 10 N -0.534 5.534 11 Si 0.715 3.285 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.213 1.213 15 C 0.056 3.944 16 N -0.182 5.182 17 N -0.125 5.125 18 C -0.106 4.106 19 C -0.043 4.043 20 C -0.161 4.161 21 C -0.178 4.178 22 C -0.160 4.160 23 N -0.165 5.165 24 C 0.021 3.979 25 C -0.184 4.184 26 C -0.199 4.199 27 C -0.214 4.214 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.481 11.705 -8.484 14.532 hybrid contribution -0.210 -1.280 -0.002 1.297 sum 1.271 10.425 -8.486 13.502 Atomic orbital electron populations 1.22651 0.83049 1.02146 0.98749 1.88303 1.17795 1.26523 1.94780 1.22493 0.93898 0.85401 0.98908 1.21955 0.93061 1.00292 0.90143 1.59453 1.08166 1.22176 1.28798 1.20227 0.99506 0.77014 0.96794 1.21684 1.29139 0.91981 1.14438 0.91721 1.24812 0.95214 0.97561 0.95731 1.69943 1.43075 1.07868 1.32538 0.86603 0.78989 0.79946 0.82947 1.19605 1.21007 1.21294 1.22605 0.92127 0.98286 0.81387 1.74618 0.94667 1.24812 1.24133 1.73714 1.18474 1.18424 1.01914 1.24190 0.83556 1.06949 0.95873 1.20844 0.90088 0.99030 0.94297 1.22970 0.93288 0.97789 1.02038 1.22829 0.97158 0.97431 1.00431 1.22935 0.95357 0.95243 1.02505 1.45919 1.08385 1.54379 1.07857 1.21362 0.98057 0.96275 0.82253 1.22499 0.96881 0.99113 0.99934 1.22996 0.92464 1.03682 1.00732 1.22961 1.04755 1.03153 0.90486 0.90128 0.95142 0.94854 0.93552 0.93519 0.90358 0.90533 0.90710 0.95710 0.93121 0.88327 0.88582 0.91360 0.90326 0.91119 0.91549 0.89197 0.89413 0.87879 0.87795 0.87977 0.88977 0.88810 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.96 7.77 -35.23 -0.27 -7.24 16 3 C 0.07 1.20 6.22 37.15 0.23 1.43 16 4 C 0.07 1.47 4.83 -3.83 -0.02 1.45 16 5 N -0.46 -9.85 4.69 -175.88 -0.83 -10.68 16 6 C 0.19 4.66 4.61 -4.97 -0.02 4.63 16 7 C -0.53 -14.89 7.69 -34.44 -0.26 -15.16 16 8 H 0.06 1.91 6.37 -52.48 -0.33 1.57 16 9 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 10 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 11 Si 0.89 22.60 29.54 -169.99 -5.02 17.57 16 12 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 C 0.41 9.01 6.05 -318.86 -1.93 7.08 16 16 N -0.34 -7.93 11.30 30.32 0.34 -7.58 16 17 N -0.29 -6.18 11.83 32.99 0.39 -5.79 16 18 C 0.16 2.98 7.11 -154.02 -1.09 1.89 16 19 C -0.02 -0.30 4.07 -90.96 -0.37 -0.67 16 20 C -0.12 -1.57 7.63 -25.83 -0.20 -1.77 16 21 C -0.14 -1.41 8.09 -25.83 -0.21 -1.62 16 22 C -0.12 -1.40 7.63 -25.92 -0.20 -1.60 16 23 N -0.47 -8.94 2.81 -114.08 -0.32 -9.26 16 24 C 0.14 2.23 6.26 -4.05 -0.03 2.20 16 25 C -0.17 -2.13 6.01 -90.62 -0.54 -2.68 16 26 C -0.16 -1.97 10.18 -26.73 -0.27 -2.24 16 27 C -0.18 -1.81 10.25 -26.73 -0.27 -2.08 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.82 5.97 -51.92 -0.31 1.51 16 34 H 0.08 1.44 7.75 -51.93 -0.40 1.04 16 35 H 0.08 1.95 5.51 -51.93 -0.29 1.66 16 36 H 0.02 0.66 6.08 -51.93 -0.32 0.34 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.10 1.17 7.06 -51.93 -0.37 0.80 16 39 H 0.10 1.43 7.81 -51.93 -0.41 1.02 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 45 H 0.09 1.16 7.05 -51.93 -0.37 0.80 16 46 H 0.10 1.81 5.85 -51.93 -0.30 1.51 16 47 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.10 1.37 8.03 -51.93 -0.42 0.95 16 49 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 405.37 15.07 6.11 6.11 Total: -1.00 -32.70 405.37 -11.60 -44.30 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.56 Total: 3.61 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.17 Total: -5.69 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.32 Total: -58.65 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.27 Total: -7.24 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.70 -11.60 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.149 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds