Wall clock time and date at job start Tue Mar 31 2020 17:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99955 * 2 1 4 4 C 1.46899 * 110.99865 * 123.95786 * 2 1 3 5 5 C 1.52995 * 109.47519 * 66.04270 * 4 2 1 6 6 C 1.52998 * 109.47409 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.47332 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99519 * 269.99546 * 7 6 5 9 9 C 1.50692 * 109.47248 * 264.51762 * 8 7 6 10 10 H 1.07998 * 120.00561 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99971 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00029 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00037 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47130 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47074 * 119.99428 * 13 11 9 16 16 H 1.48494 * 109.46894 * 239.99527 * 13 11 9 17 17 C 1.34766 * 120.00157 * 89.99607 * 7 6 5 18 18 O 1.21607 * 120.00473 * 3.77974 * 17 7 6 19 19 C 1.47429 * 120.00039 * 183.77524 * 17 7 6 20 20 C 1.41292 * 126.41426 * 345.17831 * 19 17 7 21 21 N 1.30449 * 108.02376 * 179.97438 * 20 19 17 22 22 N 1.39942 * 108.89520 * 359.74753 * 21 20 19 23 23 C 1.46500 * 125.75377 * 180.29412 * 22 21 20 24 24 C 1.52999 * 109.47378 * 305.15522 * 23 22 21 25 25 C 1.52998 * 117.49718 * 243.62084 * 24 23 22 26 26 C 1.52997 * 60.00246 * 252.50961 * 25 24 23 27 27 C 1.34255 * 108.49383 * 0.42248 * 22 21 20 28 28 H 1.09002 * 109.46955 * 296.04568 * 1 2 3 29 29 H 1.09003 * 109.47295 * 56.04082 * 1 2 3 30 30 H 1.08996 * 109.47565 * 176.04650 * 1 2 3 31 31 H 1.09009 * 109.46818 * 183.95812 * 3 2 1 32 32 H 1.08996 * 109.47316 * 303.94994 * 3 2 1 33 33 H 1.08998 * 109.47096 * 63.95865 * 3 2 1 34 34 H 1.09002 * 109.46912 * 306.04129 * 4 2 1 35 35 H 1.09006 * 109.46812 * 186.04414 * 4 2 1 36 36 H 1.09002 * 109.47143 * 60.00001 * 5 4 2 37 37 H 1.08997 * 109.47191 * 300.00203 * 5 4 2 38 38 H 1.08995 * 109.47082 * 59.99462 * 6 5 4 39 39 H 1.09004 * 109.46871 * 299.99530 * 6 5 4 40 40 H 1.08997 * 109.47276 * 24.52425 * 8 7 6 41 41 H 1.09001 * 109.46667 * 144.51552 * 8 7 6 42 42 H 0.97000 * 119.99776 * 180.02562 * 12 11 9 43 43 H 1.07996 * 125.98557 * 359.94084 * 20 19 17 44 44 H 1.09006 * 109.46864 * 65.15122 * 23 22 21 45 45 H 1.08995 * 109.47312 * 185.14755 * 23 22 21 46 46 H 1.08997 * 115.54784 * 29.32432 * 24 23 22 47 47 H 1.09002 * 117.49680 * 0.02562 * 25 24 23 48 48 H 1.09004 * 117.50217 * 145.01135 * 25 24 23 49 49 H 1.09004 * 117.49597 * 252.51542 * 26 25 24 50 50 H 1.08991 * 117.52360 * 107.48038 * 26 25 24 51 51 H 1.07992 * 126.29429 * 179.84653 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6314 -2.2426 0.9703 6 6 2.1791 -3.0404 2.1554 7 7 1.8311 -4.4544 1.9950 8 6 0.5742 -4.9664 2.5465 9 6 0.8291 -5.5654 3.9056 10 1 1.8274 -5.5644 4.3176 11 6 -0.2123 -6.1147 4.6232 12 7 -1.4281 -6.1155 4.1218 13 14 0.1036 -6.8566 6.3083 14 1 1.5450 -6.7306 6.6423 15 1 -0.7053 -6.1375 7.3252 16 1 -0.2779 -8.2916 6.2967 17 6 2.6671 -5.2841 1.3400 18 8 3.7412 -4.8755 0.9422 19 6 2.2796 -6.6871 1.1058 20 6 1.2274 -7.3839 1.7412 21 7 1.2027 -8.5985 1.2660 22 7 2.2192 -8.7332 0.3136 23 6 2.5177 -9.9446 -0.4542 24 6 2.7447 -11.1140 0.5059 25 6 4.1340 -11.7547 0.5228 26 6 2.9554 -12.5002 -0.1065 27 6 2.8764 -7.5659 0.2242 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3431 -0.0709 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0628 35 1 3.0797 -0.6612 1.1755 36 1 2.0657 -2.6214 0.0451 37 1 0.5471 -2.3475 0.9323 38 1 1.7445 -2.6615 3.0804 39 1 3.2634 -2.9356 2.1938 40 1 -0.1420 -4.1498 2.6378 41 1 0.1707 -5.7308 1.8824 42 1 -2.1608 -6.5016 4.6268 43 1 0.5608 -6.9816 2.4897 44 1 1.6798 -10.1729 -1.1131 45 1 3.4158 -9.7846 -1.0508 46 1 2.2043 -11.0581 1.4509 47 1 4.8863 -11.3427 -0.1497 48 1 4.5081 -12.1202 1.4792 49 1 2.5540 -13.3563 0.4359 50 1 2.9319 -12.5792 -1.1933 51 1 3.7149 -7.3523 -0.4220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601017235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:01 Heat of formation + Delta-G solvation = 87.394578 kcal Electronic energy + Delta-G solvation = -29184.657065 eV Core-core repulsion = 25315.544801 eV Total energy + Delta-G solvation = -3869.112264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.76967 -38.69639 -37.60463 -37.37265 -35.18750 -33.28387 -32.37737 -31.37750 -29.56639 -27.81281 -27.53510 -26.88988 -25.62226 -23.13029 -22.85052 -22.57049 -21.47836 -21.01234 -20.44917 -19.94131 -18.47690 -17.02652 -16.49437 -15.92742 -15.70148 -15.44655 -15.24647 -14.95561 -14.87519 -14.51774 -14.41915 -14.05316 -13.86594 -13.62065 -13.47320 -12.78463 -12.61841 -12.43013 -12.35390 -12.26564 -12.06478 -11.73808 -11.72097 -11.67514 -11.52963 -11.29275 -11.10065 -11.00216 -10.91697 -10.61866 -10.45124 -10.25941 -10.24218 -10.04973 -9.93868 -9.73324 -8.96443 -8.88126 -8.58325 -8.31048 -8.01922 -7.59514 -6.24517 -4.32587 2.15057 2.82709 3.09484 3.22233 3.31313 3.36080 3.63256 3.88679 4.17157 4.26428 4.37088 4.40695 4.68463 4.78678 4.96547 5.07390 5.12184 5.18726 5.21778 5.28176 5.32933 5.40477 5.41315 5.44164 5.58888 5.64348 5.69348 5.71626 5.77157 5.80604 5.88775 5.90921 5.92673 5.99165 6.06167 6.11807 6.22495 6.25662 6.47952 6.65146 6.68684 6.80217 7.07440 7.10620 7.19870 7.38986 7.50736 7.62107 7.74462 8.00156 8.32623 8.42387 8.79274 9.18513 9.35383 10.79296 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008951 B = 0.003471 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.320398 B = 8063.823080 C =10402.288259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.591 5.591 8 C 0.219 3.781 9 C -0.540 4.540 10 H 0.066 0.934 11 C 0.066 3.934 12 N -0.885 5.885 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.596 3.404 18 O -0.584 6.584 19 C -0.280 4.280 20 C 0.084 3.916 21 N -0.317 5.317 22 N -0.374 5.374 23 C 0.167 3.833 24 C -0.166 4.166 25 C -0.179 4.179 26 C -0.172 4.172 27 C 0.104 3.896 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.268 0.732 43 H 0.251 0.749 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 -0.054 -9.059 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.320 5.320 8 C 0.099 3.901 9 C -0.579 4.579 10 H 0.084 0.916 11 C -0.138 4.138 12 N -0.522 5.522 13 Si 0.721 3.279 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.206 1.206 17 C 0.386 3.614 18 O -0.467 6.467 19 C -0.295 4.295 20 C -0.101 4.101 21 N -0.137 5.137 22 N -0.153 5.153 23 C 0.046 3.954 24 C -0.185 4.185 25 C -0.216 4.216 26 C -0.210 4.210 27 C -0.047 4.047 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.266 0.734 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.139 0.861 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.114 0.886 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.338 -1.392 -9.686 11.146 hybrid contribution 0.138 0.739 1.729 1.885 sum 5.476 -0.653 -7.957 9.681 Atomic orbital electron populations 1.22440 0.87421 1.02798 1.00050 1.61972 1.08094 1.13352 1.43818 1.22362 1.00712 0.89112 1.00135 1.22084 1.00044 0.93979 0.90826 1.21958 1.01545 0.93154 1.00116 1.21178 1.00590 0.81076 0.97167 1.47871 1.22488 1.07691 1.53976 1.19981 0.80364 0.95984 0.93735 1.21588 0.95410 1.38778 1.02078 0.91567 1.24980 0.94800 0.95723 0.98307 1.69933 0.99729 1.44246 1.38306 0.86470 0.78705 0.79065 0.83621 1.19508 1.20748 1.20578 1.17228 0.83033 0.84101 0.77002 1.90641 1.23321 1.78009 1.54767 1.20301 1.04767 0.96591 1.07847 1.26678 0.96723 0.88986 0.97734 1.77278 1.08826 1.21065 1.06495 1.48514 1.25379 1.09255 1.32126 1.21170 1.01683 0.80990 0.91595 1.22604 1.00764 0.92885 1.02220 1.23085 0.91346 1.04243 1.02928 1.22951 1.02670 0.94821 1.00521 1.22729 0.97063 0.85724 0.99143 0.95677 0.91824 0.90700 0.91466 0.91682 0.95873 0.94716 0.90761 0.91096 0.91736 0.90740 0.90867 0.94471 0.93055 0.92199 0.73376 0.89504 0.88987 0.86145 0.88647 0.88659 0.88472 0.88591 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.07 0.56 0.81 16 2 N -0.55 -7.18 5.02 -251.26 -1.26 -8.44 16 3 C 0.03 0.26 9.57 60.06 0.57 0.84 16 4 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 5 C -0.13 -2.09 5.46 -26.73 -0.15 -2.23 16 6 C 0.12 2.29 5.41 -4.04 -0.02 2.27 16 7 N -0.59 -12.71 2.47 -176.34 -0.44 -13.15 16 8 C 0.22 5.12 4.69 -5.20 -0.02 5.09 16 9 C -0.54 -13.58 7.26 -34.44 -0.25 -13.83 16 10 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.07 1.68 4.86 -17.82 -0.09 1.59 16 12 N -0.88 -23.29 13.29 55.43 0.74 -22.55 16 13 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 C 0.60 13.33 7.61 -12.52 -0.10 13.24 16 18 O -0.58 -13.75 16.49 5.27 0.09 -13.66 16 19 C -0.28 -5.96 5.92 -105.06 -0.62 -6.58 16 20 C 0.08 1.89 9.37 -16.98 -0.16 1.73 16 21 N -0.32 -6.60 12.13 30.86 0.37 -6.23 16 22 N -0.37 -6.33 3.65 -60.81 -0.22 -6.55 16 23 C 0.17 2.00 6.77 -4.04 -0.03 1.98 16 24 C -0.17 -1.96 5.92 -90.62 -0.54 -2.50 16 25 C -0.18 -1.75 10.18 -26.73 -0.27 -2.02 16 26 C -0.17 -1.54 10.25 -26.73 -0.27 -1.81 16 27 C 0.10 1.84 11.28 -16.56 -0.19 1.66 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.96 6.47 -51.93 -0.34 0.63 16 31 H 0.07 0.66 8.12 -51.92 -0.42 0.24 16 32 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.07 6.55 -51.93 -0.34 0.73 16 38 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 39 H 0.07 1.37 7.37 -51.93 -0.38 0.98 16 40 H 0.04 0.90 8.03 -51.93 -0.42 0.48 16 41 H 0.05 1.26 4.68 -51.93 -0.24 1.02 16 42 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.25 6.14 3.00 -52.49 -0.16 5.98 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.84 7.79 -51.93 -0.40 0.43 16 46 H 0.12 1.77 7.90 -51.93 -0.41 1.36 16 47 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.18 2.55 8.06 -52.49 -0.42 2.12 16 LS Contribution 412.36 15.07 6.21 6.21 Total: -1.00 -29.78 412.36 -9.67 -39.45 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.56 Total: 8.59 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.59 Total: 1.03 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.81 Total: -56.91 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -29.78 -9.67 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601017235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.846 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds