Wall clock time and date at job start Tue Mar 31 2020 19:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99915 * 2 1 4 4 H 1.48496 * 109.46827 * 269.99655 * 3 2 1 5 5 H 1.48508 * 109.47001 * 29.99355 * 3 2 1 6 6 H 1.48491 * 109.46915 * 149.99671 * 3 2 1 7 7 C 1.39936 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99834 * 162.60540 * 7 2 1 9 9 C 1.41441 * 119.99787 * 342.60888 * 7 2 1 10 10 C 1.40787 * 120.17424 * 154.91080 * 9 7 2 11 11 C 1.37715 * 120.03710 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.40947 * 359.73679 * 11 10 9 13 13 C 1.39873 * 120.36389 * 0.52043 * 12 11 10 14 14 C 1.47884 * 120.03179 * 179.76109 * 13 12 11 15 15 O 1.21544 * 120.00640 * 179.72335 * 14 13 12 16 16 N 1.34784 * 119.99457 * 359.44759 * 14 13 12 17 17 N 1.40101 * 119.99735 * 180.27599 * 16 14 13 18 18 C 1.35018 * 126.03603 * 0.02562 * 17 16 14 19 19 C 1.35358 * 107.73233 * 179.97438 * 18 17 16 20 20 Br 1.89102 * 126.04905 * 179.97438 * 19 18 17 21 21 C 1.39922 * 107.90989 * 359.97438 * 19 18 17 22 22 N 1.30850 * 108.20519 * 359.74070 * 21 19 18 23 23 C 1.39036 * 119.94485 * 359.48646 * 13 12 11 24 24 H 0.97001 * 119.99951 * 0.02562 * 1 2 3 25 25 H 1.07990 * 119.98121 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.79025 * 180.02562 * 11 10 9 27 27 H 1.08008 * 119.81608 * 180.25807 * 12 11 10 28 28 H 0.97001 * 119.99783 * 0.27779 * 16 14 13 29 29 H 1.07995 * 126.13320 * 359.95653 * 18 17 16 30 30 H 1.07995 * 125.89808 * 180.02562 * 21 19 18 31 31 H 1.08000 * 120.20358 * 180.23061 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4396 2.6528 0.6999 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0509 -1.2333 -0.2791 9 6 1.3493 -2.4086 0.3672 10 6 1.8189 -3.6485 -0.1063 11 6 1.1751 -4.8119 0.2521 12 6 0.0684 -4.7730 1.0819 13 6 -0.4158 -3.5501 1.5578 14 6 -1.6022 -3.5167 2.4399 15 8 -2.0196 -2.4541 2.8573 16 7 -2.2241 -4.6641 2.7767 17 7 -3.3515 -4.6319 3.6078 18 6 -3.9166 -3.5260 4.1374 19 6 -4.9799 -3.9200 4.8765 20 35 -6.1415 -2.7868 5.8474 21 6 -5.0678 -5.3141 4.7950 22 7 -4.0957 -5.7409 4.0301 23 6 0.2227 -2.3664 1.2053 24 1 -0.4850 0.8401 -0.0004 25 1 2.6840 -3.6872 -0.7515 26 1 1.5390 -5.7609 -0.1131 27 1 -0.4267 -5.6917 1.3602 28 1 -1.8909 -5.5120 2.4437 29 1 -3.5803 -2.5094 3.9969 30 1 -5.8123 -5.9309 5.2763 31 1 -0.1454 -1.4201 1.5734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752898194.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:20 Heat of formation + Delta-G solvation = 106.377535 kcal Electronic energy + Delta-G solvation = -19508.961681 eV Core-core repulsion = 16225.903018 eV Total energy + Delta-G solvation = -3283.058663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51424 -39.43458 -37.32259 -34.91516 -33.91809 -31.77217 -31.17374 -29.83459 -29.61974 -28.32456 -25.53125 -23.66219 -21.81522 -21.49622 -21.09638 -19.70457 -18.15931 -17.86378 -16.22574 -15.80175 -15.60486 -15.18274 -14.90091 -14.35194 -14.19309 -13.57444 -13.50496 -13.17325 -12.95406 -12.72435 -11.89164 -11.55978 -11.34666 -11.31987 -11.22567 -10.97024 -10.67984 -10.59644 -10.31442 -10.15319 -9.93730 -9.55187 -9.39438 -9.23577 -8.27767 -7.91025 -7.75842 -6.98992 -4.61062 0.94722 1.55762 1.92974 1.96800 2.41191 2.61299 2.97349 2.99496 3.04550 3.40260 3.78780 3.94384 4.39958 4.62721 4.83300 5.21710 5.35503 5.46235 5.56864 5.84234 6.01339 6.15397 6.47161 6.65529 6.75842 6.92030 6.98975 7.07689 7.10585 7.42868 7.49410 7.62211 7.73878 7.92723 8.26974 8.29434 8.58733 8.61208 9.95816 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003080 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.299786 B = 9087.432098 C =10692.277802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.091 4.091 12 C -0.222 4.222 13 C -0.117 4.117 14 C 0.573 3.427 15 O -0.524 6.524 16 N -0.500 5.500 17 N -0.165 5.165 18 C 0.122 3.878 19 C -0.259 4.259 20 Br -0.017 7.017 21 C 0.081 3.919 22 N -0.290 5.290 23 C -0.083 4.083 24 H 0.287 0.713 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.437 0.563 29 H 0.210 0.790 30 H 0.200 0.800 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -5.520 8.254 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.483 4.483 8 H 0.103 0.897 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.109 4.109 12 C -0.243 4.243 13 C -0.122 4.122 14 C 0.365 3.635 15 O -0.399 6.399 16 N -0.252 5.252 17 N -0.027 5.027 18 C -0.031 4.031 19 C -0.351 4.351 20 Br 0.065 6.935 21 C -0.105 4.105 22 N -0.114 5.114 23 C -0.103 4.103 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.282 0.718 29 H 0.226 0.774 30 H 0.217 0.783 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.249 -5.232 8.243 13.449 hybrid contribution 0.238 0.598 -0.111 0.654 sum -9.011 -4.634 8.131 12.992 Atomic orbital electron populations 1.69757 1.07671 1.30185 1.32904 1.26001 0.94822 1.01784 0.92093 0.86236 0.80632 0.80152 0.79414 1.19276 1.19802 1.18236 1.19635 0.98205 0.90868 1.39544 0.89721 1.17573 0.90941 0.92669 0.89107 1.21174 1.03413 0.92670 1.05244 1.20449 0.95627 0.97061 0.97756 1.20322 1.01922 0.94156 1.07857 1.18965 0.95044 0.96138 1.02026 1.19526 0.83156 0.81083 0.79753 1.90645 1.65240 1.29615 1.54363 1.45606 1.19567 1.13120 1.46904 1.47335 1.16238 1.05584 1.33495 1.23335 0.92272 0.94110 0.93378 1.21567 1.04513 0.94465 1.14551 1.96578 1.60754 1.63962 1.72184 1.23814 0.96922 0.92962 0.96847 1.77536 1.07667 1.07177 1.19030 1.21632 0.96258 0.95964 0.96473 0.90140 0.88156 0.88362 0.89069 0.71817 0.77395 0.78340 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.29 10.97 55.55 0.61 -18.68 16 2 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.45 -11.07 9.05 -37.73 -0.34 -11.41 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.10 2.43 5.57 -106.87 -0.59 1.84 16 10 C -0.21 -4.46 9.78 -38.81 -0.38 -4.83 16 11 C -0.09 -1.76 10.01 -39.72 -0.40 -2.15 16 12 C -0.22 -4.23 9.55 -38.92 -0.37 -4.60 16 13 C -0.12 -2.49 5.87 -105.04 -0.62 -3.11 16 14 C 0.57 11.48 7.85 -12.31 -0.10 11.39 16 15 O -0.52 -11.59 13.46 5.33 0.07 -11.52 16 16 N -0.50 -8.47 6.62 30.54 0.20 -8.27 16 17 N -0.16 -2.78 4.87 30.47 0.15 -2.63 16 18 C 0.12 2.01 10.39 -17.18 -0.18 1.83 16 19 C -0.26 -3.63 6.53 -39.98 -0.26 -3.89 16 20 Br -0.02 -0.20 34.08 -68.01 -2.32 -2.52 16 21 C 0.08 1.05 12.01 -17.34 -0.21 0.84 16 22 N -0.29 -4.43 12.70 30.64 0.39 -4.04 16 23 C -0.08 -2.02 8.23 -38.44 -0.32 -2.33 16 24 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 25 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 26 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.09 1.41 6.38 -52.48 -0.33 1.07 16 28 H 0.44 6.33 6.85 -182.60 -1.25 5.08 16 29 H 0.21 3.65 5.79 -52.49 -0.30 3.35 16 30 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.14 3.59 5.77 -52.49 -0.30 3.29 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -26.56 298.73 -8.29 -34.84 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -3.01 Total: 10.56 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -3.85 Total: -14.81 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 1.35 Total: -33.62 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.32 Total: -2.52 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.56 -8.29 -34.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752898194.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.221 kcal (2) G-P(sol) polarization free energy of solvation -26.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds