Wall clock time and date at job start Tue Mar 31 2020 19:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99915 * 2 1 4 4 H 1.48496 * 109.46827 * 269.99655 * 3 2 1 5 5 H 1.48508 * 109.47001 * 29.99355 * 3 2 1 6 6 H 1.48491 * 109.46915 * 149.99671 * 3 2 1 7 7 C 1.39936 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99834 * 162.60540 * 7 2 1 9 9 C 1.41441 * 119.99787 * 342.60888 * 7 2 1 10 10 C 1.40787 * 120.17424 * 154.91080 * 9 7 2 11 11 C 1.37715 * 120.03710 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.40947 * 359.73679 * 11 10 9 13 13 C 1.39873 * 120.36389 * 0.52043 * 12 11 10 14 14 C 1.47884 * 120.03179 * 179.76109 * 13 12 11 15 15 O 1.21544 * 120.00640 * 179.72335 * 14 13 12 16 16 N 1.34784 * 119.99457 * 359.44759 * 14 13 12 17 17 N 1.40101 * 119.99735 * 180.27599 * 16 14 13 18 18 C 1.35018 * 126.03603 * 0.02562 * 17 16 14 19 19 C 1.35358 * 107.73233 * 179.97438 * 18 17 16 20 20 Br 1.89102 * 126.04905 * 179.97438 * 19 18 17 21 21 C 1.39922 * 107.90989 * 359.97438 * 19 18 17 22 22 N 1.30850 * 108.20519 * 359.74070 * 21 19 18 23 23 C 1.39036 * 119.94485 * 359.48646 * 13 12 11 24 24 H 0.97001 * 119.99951 * 0.02562 * 1 2 3 25 25 H 1.07990 * 119.98121 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.79025 * 180.02562 * 11 10 9 27 27 H 1.08008 * 119.81608 * 180.25807 * 12 11 10 28 28 H 0.97001 * 119.99783 * 0.27779 * 16 14 13 29 29 H 1.07995 * 126.13320 * 359.95653 * 18 17 16 30 30 H 1.07995 * 125.89808 * 180.02562 * 21 19 18 31 31 H 1.08000 * 120.20358 * 180.23061 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4396 2.6528 0.6999 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0509 -1.2333 -0.2791 9 6 1.3493 -2.4086 0.3672 10 6 1.8189 -3.6485 -0.1063 11 6 1.1751 -4.8119 0.2521 12 6 0.0684 -4.7730 1.0819 13 6 -0.4158 -3.5501 1.5578 14 6 -1.6022 -3.5167 2.4399 15 8 -2.0196 -2.4541 2.8573 16 7 -2.2241 -4.6641 2.7767 17 7 -3.3515 -4.6319 3.6078 18 6 -3.9166 -3.5260 4.1374 19 6 -4.9799 -3.9200 4.8765 20 35 -6.1415 -2.7868 5.8474 21 6 -5.0678 -5.3141 4.7950 22 7 -4.0957 -5.7409 4.0301 23 6 0.2227 -2.3664 1.2053 24 1 -0.4850 0.8401 -0.0004 25 1 2.6840 -3.6872 -0.7515 26 1 1.5390 -5.7609 -0.1131 27 1 -0.4267 -5.6917 1.3602 28 1 -1.8909 -5.5120 2.4437 29 1 -3.5803 -2.5094 3.9969 30 1 -5.8123 -5.9309 5.2763 31 1 -0.1454 -1.4201 1.5734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752898194.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:20 Heat of formation + Delta-G solvation = 91.316970 kcal Electronic energy + Delta-G solvation = -19509.614756 eV Core-core repulsion = 16225.903018 eV Total energy + Delta-G solvation = -3283.711738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.75133 -40.95777 -38.97663 -36.36390 -35.60620 -32.93952 -32.63294 -31.43932 -31.07552 -29.55814 -27.25930 -25.15694 -23.19578 -22.82489 -22.67065 -21.19647 -19.54160 -19.44064 -17.86269 -17.16797 -17.13564 -16.55356 -16.45886 -15.87284 -15.63841 -15.19015 -14.83513 -14.53782 -14.39645 -14.19926 -13.56708 -13.04424 -12.82440 -12.74971 -12.60570 -12.47935 -12.24598 -11.99622 -11.76910 -11.59250 -11.20760 -11.13538 -11.10184 -10.49441 -9.68298 -9.47079 -9.38156 -8.70970 -6.42210 -0.31591 0.03857 0.55143 0.83246 0.94740 1.33251 1.38033 1.44630 1.52957 1.79087 2.18027 2.64384 2.70161 3.31099 3.60912 3.69657 3.86659 4.26163 4.33506 4.42552 4.47681 4.82356 5.00471 5.07179 5.11529 5.24799 5.41032 5.57370 5.67075 5.79013 5.88087 5.99475 6.21882 6.33997 6.52029 6.80304 6.85064 6.86276 8.25892 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003080 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.299786 B = 9087.432098 C =10692.277802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.033 3.967 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.493 4.493 8 H 0.087 0.913 9 C 0.070 3.930 10 C -0.208 4.208 11 C -0.091 4.091 12 C -0.199 4.199 13 C -0.123 4.123 14 C 0.574 3.426 15 O -0.553 6.553 16 N -0.485 5.485 17 N -0.183 5.183 18 C 0.098 3.902 19 C -0.252 4.252 20 Br 0.005 6.995 21 C 0.098 3.902 22 N -0.298 5.298 23 C -0.119 4.119 24 H 0.288 0.712 25 H 0.113 0.887 26 H 0.142 0.858 27 H 0.136 0.864 28 H 0.448 0.552 29 H 0.191 0.809 30 H 0.244 0.756 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 -7.872 8.893 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.522 4.522 8 H 0.105 0.895 9 C 0.068 3.932 10 C -0.228 4.228 11 C -0.108 4.108 12 C -0.219 4.219 13 C -0.128 4.128 14 C 0.365 3.635 15 O -0.430 6.430 16 N -0.237 5.237 17 N -0.045 5.045 18 C -0.054 4.054 19 C -0.345 4.345 20 Br 0.087 6.913 21 C -0.089 4.089 22 N -0.122 5.122 23 C -0.140 4.140 24 H 0.099 0.901 25 H 0.131 0.869 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.296 0.704 29 H 0.208 0.792 30 H 0.260 0.740 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.938 -7.632 8.877 15.356 hybrid contribution 0.295 1.091 -0.197 1.147 sum -9.643 -6.541 8.680 14.530 Atomic orbital electron populations 1.69848 1.09153 1.30830 1.34974 1.26797 0.95380 1.04823 0.91232 0.85232 0.79184 0.75922 0.79665 1.18321 1.19761 1.17830 1.19890 0.98574 0.92011 1.41708 0.89512 1.17897 0.91568 0.93981 0.89785 1.21491 1.03729 0.92687 1.04860 1.20930 0.95010 0.97998 0.96903 1.20858 1.00966 0.94728 1.05338 1.19151 0.95322 0.96284 1.02071 1.19252 0.83103 0.81475 0.79664 1.90644 1.66008 1.30979 1.55378 1.45112 1.19630 1.12534 1.46429 1.47429 1.16548 1.06161 1.34407 1.23248 0.93586 0.93781 0.94789 1.21760 1.03713 0.95511 1.13495 1.96611 1.59607 1.63646 1.71407 1.24568 0.96424 0.92708 0.95242 1.77548 1.08198 1.06663 1.19742 1.21426 0.97937 0.96031 0.98568 0.90104 0.86912 0.83980 0.84586 0.70407 0.79217 0.74017 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.21 10.97 21.82 0.24 -42.97 16 2 C 0.03 1.64 5.14 85.25 0.44 2.08 16 3 Si 0.98 37.49 29.59 68.60 2.03 39.52 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.49 -25.15 9.05 23.47 0.21 -24.94 16 8 H 0.09 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.07 3.53 5.57 -21.32 -0.12 3.41 16 10 C -0.21 -8.90 9.78 22.77 0.22 -8.68 16 11 C -0.09 -3.24 10.01 22.18 0.22 -3.02 16 12 C -0.20 -7.05 9.55 22.70 0.22 -6.83 16 13 C -0.12 -5.29 5.87 -20.14 -0.12 -5.41 16 14 C 0.57 23.28 7.85 86.80 0.68 23.96 16 15 O -0.55 -25.64 13.46 -3.85 -0.05 -25.69 16 16 N -0.48 -15.90 6.62 -175.57 -1.16 -17.07 16 17 N -0.18 -5.96 4.87 -57.53 -0.28 -6.24 16 18 C 0.10 3.20 10.39 83.54 0.87 4.06 16 19 C -0.25 -6.64 6.53 22.01 0.14 -6.50 16 20 Br 0.01 0.11 34.08 -20.37 -0.69 -0.58 16 21 C 0.10 2.21 12.01 85.25 1.02 3.23 16 22 N -0.30 -8.35 12.70 -56.98 -0.72 -9.07 16 23 C -0.12 -6.06 8.23 23.01 0.19 -5.87 16 24 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 25 H 0.11 4.43 8.06 -2.92 -0.02 4.41 16 26 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 27 H 0.14 3.56 6.38 -2.91 -0.02 3.54 16 28 H 0.45 11.85 6.85 -213.32 -1.46 10.39 16 29 H 0.19 6.95 5.79 -2.91 -0.02 6.93 16 30 H 0.24 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.11 6.01 5.77 -2.91 -0.02 5.99 16 Total: -1.00 -61.14 298.73 3.08 -58.06 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.25 Total: 28.54 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 3.98 Total: -24.50 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.93 Total: -75.35 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -0.69 Total: -0.58 kcal Total: -61.14 3.08 -58.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752898194.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.376 kcal (2) G-P(sol) polarization free energy of solvation -61.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds