Wall clock time and date at job start Tue Mar 31 2020 18:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46335 * 2 1 4 4 N 1.46902 * 109.47122 * 119.99641 * 2 1 3 5 5 C 1.46901 * 111.00088 * 275.00248 * 4 2 1 6 6 C 1.53005 * 109.46845 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47042 * 175.00018 * 6 5 4 8 8 C 1.53008 * 109.46747 * 60.00014 * 7 6 5 9 9 C 1.53004 * 109.46949 * 60.00065 * 8 7 6 10 10 C 1.52996 * 109.47318 * 59.99925 * 9 8 7 11 11 C 1.53000 * 109.46923 * 300.00035 * 10 9 8 12 12 C 1.52996 * 109.47204 * 179.97438 * 7 6 5 13 13 C 1.53001 * 109.46793 * 299.99776 * 11 10 9 14 14 C 1.52996 * 109.47204 * 60.00395 * 13 11 10 15 15 C 1.52995 * 109.47032 * 299.99838 * 14 13 11 16 16 C 1.50697 * 109.47413 * 240.00159 * 2 1 3 17 17 O 1.21278 * 120.00206 * 254.33347 * 16 2 1 18 18 N 1.34780 * 119.99710 * 74.32760 * 16 2 1 19 19 C 1.46502 * 120.00361 * 3.61107 * 18 16 2 20 20 C 1.46498 * 119.99642 * 183.60354 * 18 16 2 21 21 C 1.50703 * 109.47093 * 90.00507 * 20 18 16 22 22 H 1.07994 * 119.99561 * 359.97438 * 21 20 18 23 23 C 1.37872 * 119.99911 * 180.02562 * 21 20 18 24 24 N 1.31509 * 120.00378 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99741 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47300 * 90.00015 * 25 23 21 27 27 H 1.48510 * 109.47154 * 209.99808 * 25 23 21 28 28 H 1.48501 * 109.47294 * 329.99725 * 25 23 21 29 29 H 1.08999 * 109.46593 * 176.08527 * 1 2 3 30 30 H 1.09001 * 109.47267 * 296.08559 * 1 2 3 31 31 H 1.08997 * 109.47051 * 56.08755 * 1 2 3 32 32 H 1.00906 * 110.99503 * 151.04937 * 4 2 1 33 33 H 1.08998 * 109.47200 * 60.00430 * 5 4 2 34 34 H 1.09002 * 109.47255 * 300.00021 * 5 4 2 35 35 H 1.09004 * 109.46969 * 55.00054 * 6 5 4 36 36 H 1.08993 * 109.46921 * 300.00088 * 7 6 5 37 37 H 1.08998 * 109.47007 * 300.00178 * 8 7 6 38 38 H 1.08996 * 109.46559 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.46422 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.47473 * 59.99591 * 10 9 8 41 41 H 1.08993 * 109.47339 * 179.97438 * 10 9 8 42 42 H 1.09001 * 109.47337 * 180.02562 * 11 10 9 43 43 H 1.08999 * 109.46955 * 59.99600 * 12 7 6 44 44 H 1.08993 * 109.47482 * 180.02562 * 12 7 6 45 45 H 1.09004 * 109.47209 * 180.02562 * 13 11 10 46 46 H 1.09005 * 109.47464 * 299.99836 * 13 11 10 47 47 H 1.09005 * 109.47473 * 179.97438 * 14 13 11 48 48 H 1.09003 * 109.47367 * 300.00205 * 15 14 13 49 49 H 1.09001 * 109.47446 * 179.97438 * 15 14 13 50 50 H 1.08999 * 109.47086 * 84.64699 * 19 18 16 51 51 H 1.09001 * 109.46925 * 204.64961 * 19 18 16 52 52 H 1.09005 * 109.46708 * 324.64794 * 19 18 16 53 53 H 1.09001 * 109.47138 * 210.00506 * 20 18 16 54 54 H 1.09004 * 109.47350 * 330.00580 * 20 18 16 55 55 H 0.97008 * 120.00311 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5963 -0.5328 3.5742 7 6 2.7801 0.4461 4.7356 8 6 1.4384 1.1032 5.0659 9 6 0.4267 0.0259 5.4621 10 6 0.9405 -0.7295 6.6894 11 6 2.2822 -1.3865 6.3591 12 6 3.2933 -0.3094 5.9631 13 6 2.0984 -2.3655 5.1977 14 6 1.5846 -1.6100 3.9704 15 6 0.2430 -0.9530 4.3007 16 6 2.0325 -0.7103 -1.2304 17 8 2.5020 -1.8247 -1.1381 18 7 1.9598 -0.1072 -2.4336 19 6 1.4661 1.2684 -2.5349 20 6 2.3748 -0.8272 -3.6400 21 6 1.1927 -1.5617 -4.2183 22 1 0.2289 -1.4987 -3.7351 23 6 1.3420 -2.3147 -5.3635 24 7 2.5157 -2.3918 -5.9515 25 14 -0.1235 -3.2245 -6.0806 26 1 -0.8268 -2.3450 -7.0486 27 1 0.3464 -4.4498 -6.7759 28 1 -1.0550 -3.6021 -4.9875 29 1 -0.3632 -1.0253 -0.0702 30 1 -0.3634 0.4519 0.9230 31 1 -0.3633 0.5733 -0.8528 32 1 2.9175 -1.1204 1.0287 33 1 1.0871 0.6163 2.5526 34 1 2.7588 1.0463 2.1182 35 1 3.5521 -1.0009 3.3388 36 1 3.5008 1.2135 4.4533 37 1 1.0724 1.6413 4.1916 38 1 1.5693 1.8002 5.8936 39 1 -0.5289 0.4941 5.6979 40 1 1.0715 -0.0321 7.5169 41 1 0.2197 -1.4967 6.9719 42 1 2.6480 -1.9251 7.2333 43 1 4.2489 -0.7779 5.7280 44 1 3.4238 0.3878 6.7906 45 1 3.0541 -2.8339 4.9626 46 1 1.3777 -3.1330 5.4799 47 1 1.4541 -2.3074 3.1428 48 1 -0.4778 -1.7204 4.5830 49 1 -0.1229 -0.4144 3.4265 50 1 2.2847 1.9630 -2.3466 51 1 1.0678 1.4387 -3.5351 52 1 0.6784 1.4268 -1.7982 53 1 2.7558 -0.1171 -4.3740 54 1 3.1575 -1.5419 -3.3855 55 1 2.6208 -2.9220 -6.7571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763387397.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:47 Heat of formation + Delta-G solvation = -81.218920 kcal Electronic energy + Delta-G solvation = -30734.318210 eV Core-core repulsion = 26961.434659 eV Total energy + Delta-G solvation = -3772.883551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.40861 -40.90141 -37.38158 -36.57179 -34.84327 -34.05531 -33.42758 -33.42065 -31.16507 -29.56459 -27.67710 -27.32563 -26.67080 -25.74390 -24.58728 -23.03000 -22.22407 -22.17416 -21.27593 -20.00966 -18.68766 -18.37433 -17.83352 -17.40444 -16.73624 -16.22267 -16.03462 -15.90625 -15.57097 -15.32618 -15.15609 -15.09927 -14.62891 -14.26170 -14.11597 -14.07940 -13.93406 -13.70545 -13.65067 -13.54899 -13.27491 -13.20180 -13.18823 -13.12941 -12.91466 -12.72614 -12.61537 -12.38704 -12.24733 -12.16639 -11.73913 -11.71240 -11.69624 -11.64154 -11.58449 -11.48215 -10.65556 -10.52036 -10.44321 -10.41754 -10.32216 -9.45042 -9.32588 -8.23778 -6.38801 1.35361 1.38696 1.48978 1.78239 2.26568 2.41219 3.05723 3.17325 3.59092 3.65123 3.69807 3.73832 4.10854 4.17724 4.18488 4.28252 4.30142 4.33790 4.41030 4.41648 4.48622 4.50716 4.54609 4.61611 4.65795 4.67638 4.70425 4.77874 4.80533 4.86517 4.92750 4.94529 4.97569 4.99957 5.02471 5.10120 5.20952 5.22595 5.23797 5.26999 5.29350 5.29806 5.32652 5.35433 5.37862 5.54137 5.62881 5.70260 5.74693 5.75893 5.81412 6.04347 6.05997 6.34278 6.68798 6.77498 7.26528 7.45177 8.83350 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.002463 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.250387 B =11367.713940 C =11586.532903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.084 3.916 3 H 0.087 0.913 4 N -0.678 5.678 5 C 0.065 3.935 6 C -0.069 4.069 7 C -0.077 4.077 8 C -0.106 4.106 9 C -0.084 4.084 10 C -0.104 4.104 11 C -0.084 4.084 12 C -0.105 4.105 13 C -0.110 4.110 14 C -0.071 4.071 15 C -0.105 4.105 16 C 0.493 3.507 17 O -0.589 6.589 18 N -0.608 5.608 19 C 0.071 3.929 20 C 0.258 3.742 21 C -0.542 4.542 22 H 0.054 0.946 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.968 3.032 26 H -0.262 1.262 27 H -0.281 1.281 28 H -0.273 1.273 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.339 0.661 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.095 0.905 53 H 0.024 0.976 54 H -0.004 1.004 55 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 11.790 26.799 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.029 4.029 3 H 0.104 0.896 4 N -0.311 5.311 5 C -0.063 4.063 6 C -0.088 4.088 7 C -0.096 4.096 8 C -0.143 4.143 9 C -0.102 4.102 10 C -0.142 4.142 11 C -0.103 4.103 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.090 4.090 15 C -0.142 4.142 16 C 0.281 3.719 17 O -0.469 6.469 18 N -0.339 5.339 19 C -0.071 4.071 20 C 0.137 3.863 21 C -0.580 4.580 22 H 0.072 0.928 23 C -0.192 4.192 24 N -0.569 5.569 25 Si 0.792 3.208 26 H -0.186 1.186 27 H -0.207 1.207 28 H -0.198 1.198 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.113 0.887 53 H 0.042 0.958 54 H 0.015 0.985 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.114 10.920 26.832 29.259 hybrid contribution 0.593 -0.595 -1.358 1.597 sum -3.521 10.324 25.474 27.711 Atomic orbital electron populations 1.21750 0.91350 1.02093 1.03460 1.21427 0.98143 0.96405 0.86917 0.89574 1.60378 1.34260 1.33018 1.03455 1.22267 1.01661 0.93112 0.89302 1.21048 0.97934 0.95990 0.93780 1.21030 0.97660 0.96655 0.94249 1.21563 0.94232 0.97073 1.01466 1.21052 0.98682 0.95664 0.94848 1.21516 0.96105 0.99277 0.97286 1.21034 0.95986 0.95945 0.97310 1.21503 0.97717 0.97545 0.97484 1.21564 1.00358 0.97544 0.95318 1.20859 0.95061 0.96415 0.96651 1.21515 0.96197 0.98323 0.98187 1.21383 0.78443 0.86272 0.85786 1.90629 1.47798 1.21901 1.86573 1.48144 1.63170 1.15679 1.06924 1.22106 1.00195 0.80645 1.04165 1.18770 0.94668 0.91248 0.81623 1.21690 0.96141 1.30364 1.09813 0.92822 1.25873 0.99081 0.97090 0.97169 1.70053 1.24736 1.41631 1.20487 0.85408 0.78825 0.78156 0.78388 1.18636 1.20668 1.19772 0.94198 0.89130 0.90691 0.84196 0.89244 0.94930 0.92885 0.91003 0.91646 0.91054 0.90759 0.91184 0.92308 0.91075 0.92652 0.90886 0.93080 0.92442 0.92837 0.92877 0.92008 0.91166 0.91139 0.88714 0.95839 0.98546 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.17 71.98 0.66 -2.67 16 2 C 0.08 2.47 2.19 44.17 0.10 2.56 16 3 H 0.09 2.04 7.12 -2.38 -0.02 2.03 16 4 N -0.68 -19.22 5.57 -495.42 -2.76 -21.98 16 5 C 0.06 1.32 4.16 86.30 0.36 1.68 16 6 C -0.07 -1.33 2.08 -10.79 -0.02 -1.35 16 7 C -0.08 -1.14 2.72 -10.79 -0.03 -1.17 16 8 C -0.11 -1.36 4.92 30.60 0.15 -1.21 16 9 C -0.08 -1.16 3.19 -10.79 -0.03 -1.20 16 10 C -0.10 -1.36 5.19 30.59 0.16 -1.21 16 11 C -0.08 -1.23 3.19 -10.81 -0.03 -1.27 16 12 C -0.11 -1.47 5.19 30.58 0.16 -1.31 16 13 C -0.11 -2.04 5.19 30.59 0.16 -1.88 16 14 C -0.07 -1.47 2.61 -10.80 -0.03 -1.50 16 15 C -0.10 -1.88 4.92 30.59 0.15 -1.73 16 16 C 0.49 20.99 6.85 87.66 0.60 21.59 16 17 O -0.59 -31.36 15.47 -3.02 -0.05 -31.40 16 18 N -0.61 -26.20 2.86 -851.12 -2.43 -28.63 16 19 C 0.07 2.12 9.85 127.77 1.26 3.38 16 20 C 0.26 14.24 5.16 85.63 0.44 14.68 16 21 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 22 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 23 C 0.01 0.39 5.46 84.65 0.46 0.86 16 24 N -0.93 -57.05 13.29 21.44 0.28 -56.76 16 25 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.78 7.37 -2.39 -0.02 1.76 16 31 H 0.07 1.78 5.84 -2.39 -0.01 1.76 16 32 H 0.34 11.17 7.70 -89.69 -0.69 10.48 16 33 H 0.09 1.64 4.06 -2.39 -0.01 1.63 16 34 H 0.03 0.62 8.06 -2.39 -0.02 0.60 16 35 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.83 6.54 -2.39 -0.02 0.81 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.05 1.44 7.75 -2.38 -0.02 1.42 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 1.17 6.32 -2.39 -0.02 1.15 16 50 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 52 H 0.09 2.21 4.59 -2.38 -0.01 2.20 16 53 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 54 H 0.00 -0.23 7.38 -2.39 -0.02 -0.25 16 55 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -72.87 398.43 1.99 -70.88 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.17 Total: 23.58 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 4.75 Total: -3.22 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.90 Total: -107.37 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.05 Total: -31.40 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.87 1.99 -70.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763387397.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.343 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds