Wall clock time and date at job start Tue Mar 31 2020 19:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86791 * 119.99797 * 2 1 4 4 H 1.48502 * 109.47204 * 269.99843 * 3 2 1 5 5 H 1.48495 * 109.47378 * 29.99934 * 3 2 1 6 6 H 1.48505 * 109.47353 * 150.00121 * 3 2 1 7 7 C 1.38973 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00360 * 0.02562 * 7 2 1 9 9 N 1.36989 * 119.99937 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99940 * 179.97438 * 9 7 2 11 11 O 1.21637 * 120.00338 * 0.02562 * 10 9 7 12 12 C 1.47253 * 119.99756 * 180.02562 * 10 9 7 13 13 C 1.41390 * 126.43151 * 0.04175 * 12 10 9 14 14 N 1.30441 * 108.09589 * 179.97438 * 13 12 10 15 15 N 1.39935 * 108.97490 * 0.02562 * 14 13 12 16 16 C 1.40145 * 125.76467 * 180.02562 * 15 14 13 17 17 C 1.38849 * 120.06528 * 144.70328 * 16 15 14 18 18 C 1.38120 * 119.92830 * 179.70139 * 17 16 15 19 19 C 1.38279 * 120.06995 * 0.57388 * 18 17 16 20 20 C 1.38280 * 120.13597 * 359.72597 * 19 18 17 21 21 C 1.38118 * 120.06661 * 359.97438 * 20 19 18 22 22 C 1.34631 * 108.46678 * 359.97438 * 15 14 13 23 23 Br 1.89105 * 126.33859 * 180.02562 * 22 15 14 24 24 H 0.96994 * 120.00619 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99661 * 0.02562 * 9 7 2 26 26 H 1.08005 * 125.95700 * 0.02562 * 13 12 10 27 27 H 1.07992 * 120.03638 * 359.97438 * 17 16 15 28 28 H 1.08001 * 119.96438 * 180.29131 * 18 17 16 29 29 H 1.07999 * 119.93477 * 179.74197 * 19 18 17 30 30 H 1.08002 * 119.96940 * 180.02562 * 20 19 18 31 31 H 1.08001 * 120.03850 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2036 -0.0005 8 1 1.4691 -2.1389 -0.0014 9 7 3.3789 -1.2036 -0.0011 10 6 4.0527 -2.3707 -0.0011 11 8 3.4446 -3.4242 -0.0011 12 6 5.5252 -2.3707 -0.0011 13 6 6.3649 -1.2331 -0.0002 14 7 7.6031 -1.6434 0.0000 15 7 7.6187 -3.0427 -0.0012 16 6 8.7650 -3.8490 -0.0009 17 6 8.7690 -5.0520 0.6924 18 6 9.8981 -5.8475 0.6858 19 6 11.0278 -5.4412 -0.0005 20 6 11.0290 -4.2407 -0.6867 21 6 9.9009 -3.4438 -0.6890 22 6 6.3466 -3.4834 -0.0017 23 35 5.7864 -5.2896 -0.0026 24 1 -0.4851 0.8399 0.0004 25 1 3.8639 -0.3635 -0.0007 26 1 6.0381 -0.2037 0.0009 27 1 7.8887 -5.3676 1.2326 28 1 9.9003 -6.7856 1.2210 29 1 11.9109 -6.0629 -0.0008 30 1 11.9126 -3.9262 -1.2222 31 1 9.9022 -2.5065 -1.2254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782175378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:27 Heat of formation + Delta-G solvation = 89.723256 kcal Electronic energy + Delta-G solvation = -19593.034778 eV Core-core repulsion = 16309.253932 eV Total energy + Delta-G solvation = -3283.780846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59624 -39.24793 -37.94241 -34.07365 -33.78574 -32.07416 -31.71491 -31.15545 -29.31069 -29.20335 -25.32958 -23.42746 -23.28950 -21.67930 -20.63093 -19.35058 -18.65333 -17.89878 -16.64897 -15.86486 -15.53279 -15.21971 -15.00095 -14.51030 -14.19226 -13.85938 -13.68757 -13.42953 -12.98365 -12.87275 -12.70946 -12.18607 -12.04545 -11.61638 -11.29984 -11.25938 -11.07110 -10.63379 -10.22390 -10.04584 -9.97440 -9.62644 -9.27563 -8.87742 -8.53792 -8.31174 -8.20520 -6.38783 -3.84399 0.57162 1.03108 1.16363 1.65694 2.31106 2.35650 3.00708 3.05775 3.13135 3.41690 4.05100 4.19854 4.29462 4.58792 4.60964 4.77322 4.86885 5.03721 5.05116 5.21452 5.26645 5.29541 5.39634 5.66782 5.97278 6.00688 6.02817 6.15660 6.38862 6.40674 6.86547 7.39003 7.50873 8.08837 8.53705 8.88346 9.35257 9.78728 10.73365 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.022721 B = 0.004072 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.051163 B = 6874.248552 C = 8008.869771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.042 3.958 3 Si 0.877 3.123 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.296 4.296 8 H 0.124 0.876 9 N -0.572 5.572 10 C 0.510 3.490 11 O -0.561 6.561 12 C -0.200 4.200 13 C 0.076 3.924 14 N -0.272 5.272 15 N -0.306 5.306 16 C 0.147 3.853 17 C -0.127 4.127 18 C -0.098 4.098 19 C -0.121 4.121 20 C -0.104 4.104 21 C -0.105 4.105 22 C 0.103 3.897 23 Br 0.055 6.945 24 H 0.276 0.724 25 H 0.370 0.630 26 H 0.199 0.801 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.678 -8.227 -0.045 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.162 4.162 3 Si 0.703 3.297 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.425 4.425 8 H 0.142 0.858 9 N -0.209 5.209 10 C 0.296 3.704 11 O -0.444 6.444 12 C -0.216 4.216 13 C -0.112 4.112 14 N -0.091 5.091 15 N -0.084 5.084 16 C 0.056 3.944 17 C -0.148 4.148 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.103 4.103 23 Br 0.138 6.862 24 H 0.086 0.914 25 H 0.203 0.797 26 H 0.215 0.785 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.071 -9.140 -0.050 23.888 hybrid contribution -0.180 1.716 0.026 1.725 sum 21.890 -7.424 -0.024 23.115 Atomic orbital electron populations 1.69615 1.05691 1.27795 1.48008 1.25069 0.95534 0.98106 0.97467 0.86703 0.79981 0.83910 0.79139 1.19319 1.19946 1.19260 1.19494 0.78956 0.96882 1.47178 0.85796 1.42020 1.07502 1.05875 1.65522 1.16462 0.83642 0.84939 0.85329 1.90710 1.68321 1.30246 1.55091 1.20649 0.96542 0.90269 1.14176 1.24246 0.89322 1.00068 0.97555 1.77235 1.21248 0.86361 1.24247 1.45543 1.02479 1.04585 1.55761 1.17533 0.85589 0.91265 1.00046 1.21391 1.00331 0.93863 0.99226 1.21005 0.92050 0.99548 0.99074 1.21275 0.98473 0.96634 0.97541 1.21057 0.97643 0.94358 0.99245 1.21007 0.91935 1.00936 0.98647 1.23124 0.85799 0.94472 1.06920 1.96772 1.89386 1.02928 1.97101 0.91381 0.79699 0.78467 0.84528 0.84848 0.85346 0.85020 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.83 13.96 55.50 0.77 -24.06 16 2 C 0.04 1.13 5.50 -17.46 -0.10 1.04 16 3 Si 0.88 18.80 27.74 -169.99 -4.71 14.08 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 7 C -0.30 -8.20 10.16 -14.98 -0.15 -8.35 16 8 H 0.12 3.89 7.38 -52.49 -0.39 3.50 16 9 N -0.57 -13.61 5.08 -12.00 -0.06 -13.67 16 10 C 0.51 12.01 7.76 -12.60 -0.10 11.91 16 11 O -0.56 -14.87 14.92 5.24 0.08 -14.79 16 12 C -0.20 -3.91 6.13 -105.01 -0.64 -4.56 16 13 C 0.08 1.26 11.50 -16.94 -0.19 1.06 16 14 N -0.27 -4.46 12.25 30.88 0.38 -4.08 16 15 N -0.31 -4.99 3.71 -8.60 -0.03 -5.02 16 16 C 0.15 2.00 6.34 -83.60 -0.53 1.47 16 17 C -0.13 -1.50 8.64 -39.40 -0.34 -1.84 16 18 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 19 C -0.12 -0.94 10.04 -39.55 -0.40 -1.34 16 20 C -0.10 -0.90 10.04 -39.61 -0.40 -1.30 16 21 C -0.11 -1.20 9.75 -39.40 -0.38 -1.59 16 22 C 0.10 1.86 7.21 -16.30 -0.12 1.74 16 23 Br 0.06 0.90 29.21 -68.01 -1.99 -1.08 16 24 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.37 7.67 4.71 -40.82 -0.19 7.48 16 26 H 0.20 2.62 7.50 -52.48 -0.39 2.23 16 27 H 0.14 1.66 5.86 -52.49 -0.31 1.35 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -32.16 296.68 -6.98 -39.14 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -2.14 Total: 8.03 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.75 Total: -3.02 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.06 Total: -46.83 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.08 kcal Atomic # 35 Polarization: 0.90 SS G_CDS: -1.99 Total: -1.08 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.16 -6.98 -39.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782175378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.862 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds