Wall clock time and date at job start Tue Mar 31 2020 19:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86791 * 119.99797 * 2 1 4 4 H 1.48502 * 109.47204 * 269.99843 * 3 2 1 5 5 H 1.48495 * 109.47378 * 29.99934 * 3 2 1 6 6 H 1.48505 * 109.47353 * 150.00121 * 3 2 1 7 7 C 1.38973 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00360 * 0.02562 * 7 2 1 9 9 N 1.36989 * 119.99937 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99940 * 179.97438 * 9 7 2 11 11 O 1.21637 * 120.00338 * 0.02562 * 10 9 7 12 12 C 1.47253 * 119.99756 * 180.02562 * 10 9 7 13 13 C 1.41390 * 126.43151 * 0.04175 * 12 10 9 14 14 N 1.30441 * 108.09589 * 179.97438 * 13 12 10 15 15 N 1.39935 * 108.97490 * 0.02562 * 14 13 12 16 16 C 1.40145 * 125.76467 * 180.02562 * 15 14 13 17 17 C 1.38849 * 120.06528 * 144.70328 * 16 15 14 18 18 C 1.38120 * 119.92830 * 179.70139 * 17 16 15 19 19 C 1.38279 * 120.06995 * 0.57388 * 18 17 16 20 20 C 1.38280 * 120.13597 * 359.72597 * 19 18 17 21 21 C 1.38118 * 120.06661 * 359.97438 * 20 19 18 22 22 C 1.34631 * 108.46678 * 359.97438 * 15 14 13 23 23 Br 1.89105 * 126.33859 * 180.02562 * 22 15 14 24 24 H 0.96994 * 120.00619 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99661 * 0.02562 * 9 7 2 26 26 H 1.08005 * 125.95700 * 0.02562 * 13 12 10 27 27 H 1.07992 * 120.03638 * 359.97438 * 17 16 15 28 28 H 1.08001 * 119.96438 * 180.29131 * 18 17 16 29 29 H 1.07999 * 119.93477 * 179.74197 * 19 18 17 30 30 H 1.08002 * 119.96940 * 180.02562 * 20 19 18 31 31 H 1.08001 * 120.03850 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2036 -0.0005 8 1 1.4691 -2.1389 -0.0014 9 7 3.3789 -1.2036 -0.0011 10 6 4.0527 -2.3707 -0.0011 11 8 3.4446 -3.4242 -0.0011 12 6 5.5252 -2.3707 -0.0011 13 6 6.3649 -1.2331 -0.0002 14 7 7.6031 -1.6434 0.0000 15 7 7.6187 -3.0427 -0.0012 16 6 8.7650 -3.8490 -0.0009 17 6 8.7690 -5.0520 0.6924 18 6 9.8981 -5.8475 0.6858 19 6 11.0278 -5.4412 -0.0005 20 6 11.0290 -4.2407 -0.6867 21 6 9.9009 -3.4438 -0.6890 22 6 6.3466 -3.4834 -0.0017 23 35 5.7864 -5.2896 -0.0026 24 1 -0.4851 0.8399 0.0004 25 1 3.8639 -0.3635 -0.0007 26 1 6.0381 -0.2037 0.0009 27 1 7.8887 -5.3676 1.2326 28 1 9.9003 -6.7856 1.2210 29 1 11.9109 -6.0629 -0.0008 30 1 11.9126 -3.9262 -1.2222 31 1 9.9022 -2.5065 -1.2254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782175378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:27 Heat of formation + Delta-G solvation = 68.324879 kcal Electronic energy + Delta-G solvation = -19593.962682 eV Core-core repulsion = 16309.253932 eV Total energy + Delta-G solvation = -3284.708750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.88091 -40.28096 -39.63034 -36.04585 -34.91405 -33.70992 -33.35532 -31.98456 -30.64684 -30.33655 -27.16315 -24.56976 -24.29993 -23.00644 -21.73323 -21.14334 -20.33234 -19.26122 -17.63321 -17.07573 -16.99673 -16.82287 -16.25287 -15.74466 -15.46111 -15.12970 -15.03877 -14.71433 -14.61093 -14.22831 -14.03912 -13.83028 -12.98180 -12.91335 -12.67782 -12.40955 -12.36759 -12.26438 -11.96092 -11.53644 -11.37362 -11.17562 -10.44381 -10.27640 -10.13463 -10.03396 -9.41774 -8.41273 -5.98671 -0.48757 -0.19953 0.28513 0.49053 0.96141 1.17359 1.32764 1.41267 1.46411 2.24376 2.38668 2.61028 2.83690 3.24439 3.37156 3.71875 3.82106 3.83890 3.92358 4.18154 4.36200 4.41135 4.45186 4.50501 4.96166 4.97691 5.25542 5.29892 5.44762 5.52388 5.55403 5.92021 5.94860 6.12770 6.57017 6.84840 7.35683 7.90083 8.75324 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.022721 B = 0.004072 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.051163 B = 6874.248552 C = 8008.869771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.954 3.046 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.228 1.228 7 C -0.322 4.322 8 H 0.064 0.936 9 N -0.572 5.572 10 C 0.518 3.482 11 O -0.599 6.599 12 C -0.237 4.237 13 C 0.087 3.913 14 N -0.273 5.273 15 N -0.294 5.294 16 C 0.101 3.899 17 C -0.140 4.140 18 C -0.097 4.097 19 C -0.104 4.104 20 C -0.099 4.099 21 C -0.113 4.113 22 C 0.105 3.895 23 Br 0.063 6.937 24 H 0.281 0.719 25 H 0.388 0.612 26 H 0.231 0.769 27 H 0.126 0.874 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.312 -7.589 -0.103 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.210 4.210 3 Si 0.773 3.227 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.151 1.151 7 C -0.451 4.451 8 H 0.083 0.917 9 N -0.211 5.211 10 C 0.305 3.695 11 O -0.484 6.484 12 C -0.254 4.254 13 C -0.101 4.101 14 N -0.093 5.093 15 N -0.070 5.070 16 C 0.011 3.989 17 C -0.161 4.161 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.133 4.133 22 C -0.103 4.103 23 Br 0.146 6.854 24 H 0.090 0.910 25 H 0.224 0.776 26 H 0.247 0.753 27 H 0.144 0.856 28 H 0.179 0.821 29 H 0.185 0.815 30 H 0.182 0.818 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 26.772 -8.517 -0.106 28.094 hybrid contribution -1.391 1.202 0.043 1.839 sum 25.382 -7.314 -0.063 26.415 Atomic orbital electron populations 1.69781 1.08043 1.29413 1.49385 1.26065 0.96439 1.02555 0.95913 0.85519 0.79899 0.77000 0.80252 1.17831 1.19771 1.15122 1.19035 0.80744 0.95395 1.49910 0.91750 1.41723 1.05996 1.06849 1.66553 1.17042 0.85310 0.84210 0.82897 1.90674 1.69910 1.31713 1.56079 1.20261 0.94349 0.92433 1.18389 1.24652 0.88461 1.00641 0.96310 1.77229 1.21049 0.86578 1.24421 1.45797 1.02652 1.04794 1.53763 1.17989 0.85560 0.92264 1.03073 1.21478 1.01263 0.93814 0.99495 1.21398 0.91266 1.00004 0.98852 1.21774 0.99085 0.96248 0.95112 1.21471 0.97514 0.94022 0.98748 1.21161 0.92148 1.01416 0.98566 1.23340 0.86714 0.94815 1.05444 1.96762 1.89516 1.02084 1.97010 0.90954 0.77606 0.75299 0.85644 0.82107 0.81515 0.81843 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.96 21.67 0.30 -54.74 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 3 Si 0.95 37.99 27.74 68.60 1.90 39.89 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 7 C -0.32 -18.71 10.16 84.06 0.85 -17.85 16 8 H 0.06 4.41 7.38 -2.91 -0.02 4.39 16 9 N -0.57 -27.64 5.08 -310.12 -1.58 -29.22 16 10 C 0.52 25.06 7.76 86.61 0.67 25.74 16 11 O -0.60 -33.38 14.92 -4.15 -0.06 -33.44 16 12 C -0.24 -9.28 6.13 -20.12 -0.12 -9.40 16 13 C 0.09 2.71 11.50 85.68 0.99 3.70 16 14 N -0.27 -8.53 12.25 -56.21 -0.69 -9.22 16 15 N -0.29 -9.32 3.71 -181.12 -0.67 -9.99 16 16 C 0.10 2.60 6.34 38.10 0.24 2.84 16 17 C -0.14 -3.08 8.64 22.39 0.19 -2.88 16 18 C -0.10 -1.38 10.04 22.25 0.22 -1.16 16 19 C -0.10 -1.13 10.04 22.29 0.22 -0.90 16 20 C -0.10 -1.30 10.04 22.25 0.22 -1.07 16 21 C -0.11 -2.32 9.75 22.39 0.22 -2.10 16 22 C 0.11 3.80 7.21 84.28 0.61 4.41 16 23 Br 0.06 2.10 29.21 -20.37 -0.60 1.51 16 24 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.39 15.54 4.71 -92.71 -0.44 15.11 16 26 H 0.23 5.33 7.50 -2.91 -0.02 5.31 16 27 H 0.13 2.97 5.86 -2.91 -0.02 2.96 16 28 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 30 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -76.04 296.68 4.10 -71.94 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.70 Total: 22.03 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.79 Total: 1.23 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -2.63 Total: -103.16 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.06 Total: -33.44 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Atomic # 35 Polarization: 2.10 SS G_CDS: -0.60 Total: 1.51 kcal Total: -76.04 4.10 -71.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782175378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.267 kcal (2) G-P(sol) polarization free energy of solvation -76.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds