Wall clock time and date at job start Tue Mar 31 2020 18:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99813 * 2 1 4 4 C 1.53000 * 109.47000 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46894 * 179.73368 * 4 3 2 6 6 C 1.36735 * 127.14074 * 275.26016 * 5 4 3 7 7 C 1.50698 * 126.34828 * 359.97170 * 6 5 4 8 8 C 1.53777 * 113.61426 * 219.13395 * 7 6 5 9 9 C 1.53958 * 87.01771 * 220.04474 * 8 7 6 10 10 C 1.53778 * 87.11296 * 25.36404 * 9 8 7 11 11 N 1.30302 * 107.30538 * 179.83479 * 6 5 4 12 12 N 1.28521 * 110.05114 * 0.44875 * 11 6 5 13 13 C 1.31218 * 109.86565 * 359.71612 * 12 11 6 14 14 N 1.38582 * 126.47790 * 179.97438 * 13 12 11 15 15 C 1.46893 * 111.00312 * 106.57420 * 14 13 12 16 16 C 1.50706 * 109.47219 * 305.42664 * 15 14 13 17 17 H 1.07996 * 119.99645 * 356.23128 * 16 15 14 18 18 C 1.37874 * 119.99724 * 176.23186 * 16 15 14 19 19 N 1.31516 * 119.99572 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00596 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47032 * 89.99879 * 20 18 16 22 22 H 1.48493 * 109.47280 * 209.99802 * 20 18 16 23 23 H 1.48500 * 109.46921 * 330.00209 * 20 18 16 24 24 C 1.46901 * 110.99393 * 342.62099 * 14 13 12 25 25 C 1.53007 * 109.46605 * 193.44939 * 24 14 13 26 26 C 1.52990 * 117.49942 * 245.80956 * 25 24 14 27 27 C 1.53005 * 117.49698 * 177.15100 * 25 24 14 28 28 H 1.09000 * 109.46971 * 299.99731 * 1 2 3 29 29 H 1.08995 * 109.47217 * 59.99800 * 1 2 3 30 30 H 1.09006 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47187 * 60.00186 * 3 2 1 32 32 H 1.09005 * 109.47430 * 300.00129 * 3 2 1 33 33 H 1.09001 * 109.47100 * 59.73844 * 4 3 2 34 34 H 1.08995 * 109.47572 * 299.73516 * 4 3 2 35 35 H 1.09007 * 112.84679 * 350.33294 * 7 6 5 36 36 H 1.08992 * 113.61838 * 334.56295 * 8 7 6 37 37 H 1.08999 * 113.61547 * 105.47303 * 8 7 6 38 38 H 1.09004 * 113.53900 * 270.80951 * 9 8 7 39 39 H 1.09001 * 113.74180 * 139.94653 * 9 8 7 40 40 H 1.08995 * 113.61259 * 220.09106 * 10 9 8 41 41 H 1.08999 * 113.69407 * 89.19318 * 10 9 8 42 42 H 1.09001 * 109.47109 * 65.42553 * 15 14 13 43 43 H 1.08998 * 109.47101 * 185.42505 * 15 14 13 44 44 H 0.97005 * 120.00152 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.47375 * 313.44946 * 24 14 13 46 46 H 1.08999 * 109.47518 * 73.45578 * 24 14 13 47 47 H 1.08997 * 115.54955 * 31.48159 * 25 24 14 48 48 H 1.09004 * 117.50301 * 359.97438 * 26 25 24 49 49 H 1.09002 * 117.50573 * 145.02477 * 26 25 24 50 50 H 1.08999 * 117.49420 * 214.98174 * 27 25 24 51 51 H 1.08998 * 117.49913 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0071 6 6 4.3748 3.3131 -1.0962 7 6 4.0791 2.9690 -2.5332 8 6 5.1668 3.4358 -3.5148 9 6 4.0242 3.8256 -4.4703 10 6 3.1347 3.9671 -3.2239 11 7 4.9074 4.4198 -0.6609 12 7 5.0246 4.3791 0.6183 13 6 4.5638 3.2374 1.0722 14 7 4.5243 2.8331 2.3971 15 6 3.1518 2.8734 2.9192 16 6 2.5732 4.2484 2.7056 17 1 3.1855 5.0326 2.2854 18 6 1.2622 4.5052 3.0467 19 7 0.7575 5.7054 2.8608 20 14 0.2030 3.1488 3.7729 21 1 0.3299 3.1601 5.2525 22 1 -1.2157 3.3731 3.3960 23 1 0.6529 1.8347 3.2476 24 6 5.4258 3.6476 3.2230 25 6 5.6149 2.9768 4.5851 26 6 5.0683 3.7063 5.8138 27 6 6.5783 3.6401 5.5715 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8563 0.6399 -0.8885 34 1 3.8578 0.6477 0.8914 35 1 3.7874 1.9274 -2.6677 36 1 5.7441 4.2872 -3.1544 37 1 5.7934 2.6264 -3.8894 38 1 3.7185 3.0180 -5.1355 39 1 4.1928 4.7657 -4.9955 40 1 2.1232 3.5860 -3.3638 41 1 3.1543 4.9636 -2.7826 42 1 2.5421 2.1372 2.3953 43 1 3.1617 2.6448 3.9849 44 1 -0.1650 5.8860 3.1004 45 1 6.3914 3.7386 2.7255 46 1 4.9943 4.6387 3.3629 47 1 5.5669 1.8879 4.5836 48 1 4.5743 4.6644 5.6519 49 1 4.6610 3.0974 6.6209 50 1 7.1637 2.9875 6.2192 51 1 7.0776 4.5541 5.2499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812147727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:46 Heat of formation + Delta-G solvation = 93.145604 kcal Electronic energy + Delta-G solvation = -31018.294595 eV Core-core repulsion = 27149.431714 eV Total energy + Delta-G solvation = -3868.862881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.37855 -38.56232 -37.97318 -37.81096 -35.62482 -34.64034 -32.53926 -29.70124 -29.58572 -28.14351 -26.38162 -25.77086 -25.54394 -25.19988 -23.28909 -22.36449 -21.89796 -21.27041 -20.01264 -19.56885 -18.79597 -17.31538 -17.02960 -16.20719 -15.99649 -15.84121 -15.73945 -15.25062 -14.99333 -14.91088 -14.49343 -14.25041 -13.83316 -13.57592 -13.39033 -12.72235 -12.57322 -12.37872 -12.31800 -12.29637 -12.03045 -11.73829 -11.53131 -11.43181 -11.23489 -11.11348 -10.97490 -10.85131 -10.69640 -10.66534 -10.43981 -10.40008 -10.31472 -9.93780 -9.79606 -9.71627 -9.59173 -9.51170 -9.39010 -8.75431 -8.68451 -7.46356 -6.20054 -4.21588 2.31459 2.72415 3.11315 3.18828 3.21058 3.55649 3.81121 4.18930 4.24072 4.53452 4.58898 4.69570 4.74583 4.80371 4.96978 5.02057 5.06140 5.10445 5.24472 5.29960 5.35173 5.35989 5.41110 5.44541 5.49513 5.63184 5.64150 5.71854 5.74328 5.83167 5.90032 5.92512 5.94811 5.98727 6.05612 6.07488 6.16593 6.27705 6.36542 6.39689 6.57582 6.59586 6.61446 6.76189 6.79884 6.82138 7.04962 7.17806 7.33823 7.60103 8.02135 8.31069 8.91071 9.38335 9.49384 10.92461 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008913 B = 0.005289 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.853831 B = 5293.038571 C = 6641.132968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.039 3.961 4 C 0.122 3.878 5 N -0.474 5.474 6 C 0.167 3.833 7 C -0.025 4.025 8 C -0.120 4.120 9 C -0.141 4.141 10 C -0.124 4.124 11 N -0.279 5.279 12 N -0.323 5.323 13 C 0.411 3.589 14 N -0.461 5.461 15 C 0.155 3.845 16 C -0.553 4.553 17 H 0.090 0.910 18 C 0.080 3.920 19 N -0.887 5.887 20 Si 0.861 3.139 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.264 1.264 24 C 0.107 3.893 25 C -0.139 4.139 26 C -0.175 4.175 27 C -0.182 4.182 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.045 0.955 44 H 0.264 0.736 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 -10.782 -7.428 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.039 4.039 4 C -0.003 4.003 5 N -0.170 5.170 6 C -0.100 4.100 7 C -0.046 4.046 8 C -0.159 4.159 9 C -0.178 4.178 10 C -0.162 4.162 11 N -0.118 5.118 12 N -0.166 5.166 13 C 0.055 3.945 14 N -0.184 5.184 15 C 0.030 3.970 16 C -0.592 4.592 17 H 0.108 0.892 18 C -0.123 4.123 19 N -0.524 5.524 20 Si 0.688 3.312 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.020 4.020 25 C -0.158 4.158 26 C -0.212 4.212 27 C -0.219 4.219 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.105 0.895 50 H 0.107 0.893 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.092 -9.954 -7.337 13.373 hybrid contribution -2.086 -1.044 0.676 2.429 sum 3.007 -10.998 -6.661 13.205 Atomic orbital electron populations 1.22753 0.80479 1.02582 1.00518 1.87721 1.20164 1.27263 1.95655 1.22997 0.92997 0.85125 1.02733 1.21364 0.92145 0.81336 1.05422 1.45845 1.48626 1.15906 1.06594 1.24261 1.05101 0.90161 0.90486 1.20903 0.99259 0.99855 0.84555 1.22957 0.95946 1.01836 0.95116 1.22829 0.96932 1.01786 0.96280 1.22961 0.97338 1.00232 0.95691 1.73768 1.16684 1.17349 1.04027 1.74660 1.25553 1.13784 1.02609 1.22374 0.96668 0.87130 0.88308 1.59161 1.12297 1.51153 0.95769 1.20507 0.82285 0.98042 0.96205 1.21712 0.97975 0.95993 1.43527 0.89226 1.24869 0.97583 0.95028 0.94861 1.69922 1.14949 1.20332 1.47223 0.87089 0.80314 0.83132 0.80648 1.19668 1.21080 1.18921 1.21457 0.95036 0.95533 0.90020 1.22169 1.03977 0.98986 0.90670 1.23049 0.95444 1.03073 0.99649 1.22924 0.93037 1.02826 1.03151 0.93776 0.93928 0.89459 0.90620 0.92719 0.88824 0.87551 0.88283 0.88552 0.91445 0.90326 0.90994 0.91449 0.88817 0.95081 0.93724 0.92580 0.91085 0.91104 0.87735 0.88102 0.89452 0.89324 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.39 -5.83 10.70 -35.23 -0.38 -6.21 16 3 C 0.04 0.63 6.13 37.16 0.23 0.86 16 4 C 0.12 1.87 5.85 -4.04 -0.02 1.84 16 5 N -0.47 -8.81 2.81 -114.08 -0.32 -9.13 16 6 C 0.17 3.04 7.11 -154.01 -1.09 1.95 16 7 C -0.02 -0.33 4.08 -90.96 -0.37 -0.71 16 8 C -0.12 -1.40 7.63 -25.83 -0.20 -1.60 16 9 C -0.14 -1.43 8.09 -25.83 -0.21 -1.64 16 10 C -0.12 -1.59 7.63 -25.92 -0.20 -1.79 16 11 N -0.28 -6.03 11.83 32.99 0.39 -5.64 16 12 N -0.32 -7.55 10.91 30.32 0.33 -7.22 16 13 C 0.41 8.83 5.63 -318.86 -1.79 7.03 16 14 N -0.46 -9.48 4.68 -175.87 -0.82 -10.30 16 15 C 0.15 3.50 4.10 -4.98 -0.02 3.48 16 16 C -0.55 -14.93 8.17 -34.44 -0.28 -15.21 16 17 H 0.09 2.77 6.60 -52.49 -0.35 2.42 16 18 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 19 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 20 Si 0.86 20.24 27.55 -169.99 -4.68 15.55 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.26 -5.85 6.43 56.52 0.36 -5.49 16 24 C 0.11 2.07 4.57 -3.82 -0.02 2.05 16 25 C -0.14 -2.27 4.88 -90.62 -0.44 -2.72 16 26 C -0.18 -2.78 10.07 -26.70 -0.27 -3.05 16 27 C -0.18 -2.52 10.26 -26.69 -0.27 -2.79 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.50 5.87 -51.93 -0.30 1.19 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.16 7.47 -51.93 -0.39 0.77 16 34 H 0.11 1.64 8.10 -51.93 -0.42 1.22 16 35 H 0.10 1.13 7.31 -51.93 -0.38 0.75 16 36 H 0.10 1.30 7.81 -51.93 -0.41 0.89 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 42 H 0.03 0.71 3.99 -51.93 -0.21 0.50 16 43 H 0.04 1.00 6.69 -51.93 -0.35 0.65 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.07 1.35 7.89 -51.93 -0.41 0.94 16 46 H 0.07 1.59 6.58 -51.93 -0.34 1.25 16 47 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 48 H 0.10 1.79 8.04 -51.93 -0.42 1.38 16 49 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -31.90 404.22 -11.20 -43.10 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.64 Total: 8.14 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.95 Total: -8.63 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.35 Total: -58.05 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.38 Total: -6.21 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.68 Total: 15.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.90 -11.20 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812147727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.247 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds