Wall clock time and date at job start Tue Mar 31 2020 18:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48503 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47056 * 299.99848 * 3 2 1 6 6 H 1.48499 * 109.47125 * 59.99873 * 3 2 1 7 7 C 1.37875 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00372 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00129 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47271 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47162 * 64.99759 * 12 11 10 14 14 C 1.34896 * 117.00067 * 180.02562 * 13 12 11 15 15 O 1.21627 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.46371 * 120.00109 * 179.97438 * 14 13 12 17 17 S 1.76213 * 126.18169 * 359.97438 * 16 14 13 18 18 C 1.70920 * 90.38788 * 180.02562 * 17 16 14 19 19 N 1.29384 * 110.61980 * 0.02562 * 18 17 16 20 20 C 1.30979 * 117.46742 * 359.97438 * 19 18 17 21 21 Br 1.89100 * 123.05510 * 180.02562 * 20 19 18 22 22 H 0.96999 * 119.99779 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46658 * 60.00428 * 9 7 2 24 24 H 1.08995 * 109.47578 * 300.00628 * 9 7 2 25 25 H 1.09005 * 109.47352 * 59.99679 * 11 10 9 26 26 H 1.09007 * 109.47075 * 300.00125 * 11 10 9 27 27 H 1.09004 * 109.47083 * 304.99615 * 12 11 10 28 28 H 1.09001 * 109.47138 * 184.99646 * 12 11 10 29 29 H 1.08001 * 124.68978 * 180.26206 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 8 3.3983 -5.8888 1.2408 14 6 4.3978 -6.7803 1.4014 15 8 4.6349 -7.5921 0.5273 16 6 5.1971 -6.7706 2.6276 17 16 4.9971 -5.6725 3.9911 18 6 6.2945 -6.4299 4.8063 19 7 6.7844 -7.3897 4.0902 20 6 6.2359 -7.6124 2.9219 21 35 6.8249 -8.9733 1.7484 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 0.9451 -4.9822 -0.8913 26 1 0.9445 -4.9827 0.8887 27 1 3.3221 -5.7957 -0.8418 28 1 2.1819 -6.9375 -0.0904 29 1 6.6532 -6.1488 5.7855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815233022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:50 Heat of formation + Delta-G solvation = -75.733240 kcal Electronic energy + Delta-G solvation = -17769.491889 eV Core-core repulsion = 14445.854416 eV Total energy + Delta-G solvation = -3323.637473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 334.966 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61942 -39.71743 -37.11670 -36.08143 -32.81948 -32.28846 -30.79643 -29.72054 -27.02948 -26.37056 -23.50656 -22.41668 -21.76513 -19.97699 -19.41290 -17.18600 -17.05022 -16.68089 -16.40856 -15.58268 -15.18111 -14.96253 -14.57306 -14.37257 -14.30266 -13.66370 -12.98847 -12.74208 -12.21701 -11.94653 -11.51135 -11.29613 -11.17989 -10.95659 -10.88917 -10.76389 -10.48117 -10.35940 -10.11485 -10.02176 -9.98371 -9.23157 -9.15787 -8.93046 -8.26236 -6.15874 -4.17561 -0.36678 0.46657 0.96149 1.53569 1.83361 2.47154 2.59148 3.26051 3.32811 3.39156 3.94294 4.28473 4.40271 4.63197 4.73910 5.09213 5.13968 5.20908 5.39185 5.79322 5.85745 5.98450 6.35946 6.88798 7.00585 7.35099 7.59039 7.74374 8.08084 8.47094 8.95174 9.47398 10.95647 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002885 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.201885 B = 9703.858804 C =10433.315591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.077 3.923 13 O -0.336 6.336 14 C 0.536 3.464 15 O -0.476 6.476 16 C -0.259 4.259 17 S 0.291 5.709 18 C 0.018 3.982 19 N -0.459 5.459 20 C 0.133 3.867 21 Br 0.053 6.947 22 H 0.264 0.736 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.171 -17.808 9.118 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.004 3.996 13 O -0.252 6.252 14 C 0.377 3.623 15 O -0.365 6.365 16 C -0.385 4.385 17 S 0.547 5.453 18 C -0.277 4.277 19 N -0.173 5.173 20 C -0.088 4.088 21 Br 0.137 6.863 22 H 0.073 0.927 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 11.248 -17.794 8.945 22.873 hybrid contribution 0.219 0.476 -0.319 0.613 sum 11.468 -17.318 8.626 22.491 Atomic orbital electron populations 1.69968 1.06093 1.27119 1.50543 1.24953 0.94996 0.99473 0.95115 0.86280 0.80034 0.82529 0.77660 1.19461 1.20823 1.20797 1.21075 0.94119 0.89250 1.50804 0.91467 1.20247 0.88735 0.83471 0.95549 1.87921 1.35336 1.12587 1.95240 1.22339 0.93133 0.85437 1.00759 1.23322 0.93584 0.99161 0.83541 1.86670 1.42945 1.53242 1.42328 1.19123 0.79128 0.79362 0.84685 1.90960 1.67199 1.37075 1.41246 1.24888 1.05412 1.06157 1.02079 1.84667 1.27740 1.28095 1.04772 1.28942 0.98471 0.95354 1.04889 1.66073 1.29180 1.18098 1.03965 1.22445 0.94316 0.98034 0.93960 1.96872 1.88696 1.44275 1.56464 0.92665 0.97562 0.97465 0.91634 0.93107 0.90041 0.89990 0.76811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 15 3 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 15 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.51 -14.87 9.43 -34.44 -0.32 -15.19 15 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 15 9 C 0.19 5.17 5.69 36.00 0.20 5.38 15 10 O -0.39 -9.17 10.30 -38.80 -0.40 -9.57 15 11 C 0.06 1.06 6.33 37.16 0.24 1.30 15 12 C 0.08 1.17 5.86 37.16 0.22 1.38 15 13 O -0.34 -5.43 10.09 -43.81 -0.44 -5.88 15 14 C 0.54 8.17 7.92 34.00 0.27 8.44 15 15 O -0.48 -7.72 14.60 -19.36 -0.28 -8.00 15 16 C -0.26 -3.43 6.52 -36.80 -0.24 -3.67 15 17 S 0.29 2.86 23.08 -107.50 -2.48 0.38 15 18 C 0.02 0.15 12.21 51.73 0.63 0.78 15 19 N -0.46 -5.26 10.50 -13.50 -0.14 -5.40 15 20 C 0.13 1.72 7.29 -18.40 -0.13 1.59 15 21 Br 0.05 0.67 31.85 -68.01 -2.17 -1.50 15 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 15 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 29 H 0.22 0.78 8.06 -52.49 -0.42 0.36 15 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -33.10 304.29 -7.35 -40.45 By element: Atomic # 1 Polarization: -4.91 SS G_CDS: -2.50 Total: -7.41 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 0.76 Total: 1.49 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.59 Total: -31.01 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.12 Total: -23.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.48 Total: 0.38 kcal Atomic # 35 Polarization: 0.67 SS G_CDS: -2.17 Total: -1.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.10 -7.35 -40.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.279 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds