Wall clock time and date at job start Tue Mar 31 2020 18:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.89836 * 2 1 4 4 N 1.40081 * 108.20625 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.04181 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47031 * 299.97880 * 5 4 3 7 7 C 1.53005 * 109.47184 * 59.97236 * 5 4 3 8 8 C 1.34947 * 107.92547 * 359.75692 * 4 3 2 9 9 C 1.50701 * 126.13033 * 180.24004 * 8 4 3 10 10 C 1.35320 * 107.74436 * 0.39354 * 8 4 3 11 11 C 1.50704 * 126.03919 * 179.87173 * 10 8 4 12 12 N 1.46894 * 109.47160 * 269.71457 * 11 10 8 13 13 C 1.46898 * 111.00041 * 45.69838 * 12 11 10 14 14 C 1.52789 * 109.41936 * 187.11714 * 13 12 11 15 15 H 1.08993 * 109.46303 * 66.18200 * 14 13 12 16 16 C 1.52999 * 109.55399 * 186.61127 * 14 13 12 17 17 N 1.47085 * 108.76646 * 306.42172 * 14 13 12 18 18 C 1.36933 * 120.88120 * 231.12691 * 17 14 13 19 19 H 1.08001 * 119.99502 * 128.20493 * 18 17 14 20 20 C 1.38808 * 120.00343 * 308.20438 * 18 17 14 21 21 N 1.31620 * 119.99747 * 338.25040 * 20 18 17 22 22 Si 1.86795 * 120.00346 * 158.24906 * 20 18 17 23 23 H 1.48499 * 109.47312 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46977 * 299.99798 * 22 20 18 25 25 H 1.48504 * 109.47296 * 59.99844 * 22 20 18 26 26 C 1.47077 * 118.23206 * 50.85331 * 17 14 13 27 27 H 1.09005 * 109.62948 * 68.80161 * 26 17 14 28 28 C 1.53000 * 109.62600 * 189.37918 * 26 17 14 29 29 C 1.46894 * 111.00235 * 170.00246 * 12 11 10 30 30 H 1.09004 * 109.46582 * 270.01992 * 1 2 3 31 31 H 1.08997 * 109.47119 * 30.01333 * 1 2 3 32 32 H 1.09000 * 109.47367 * 150.02309 * 1 2 3 33 33 H 1.08998 * 109.47608 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46946 * 179.97438 * 6 5 4 35 35 H 1.09006 * 109.46852 * 299.99261 * 6 5 4 36 36 H 1.08991 * 109.47495 * 59.99400 * 6 5 4 37 37 H 1.09003 * 109.47020 * 59.99903 * 7 5 4 38 38 H 1.08993 * 109.47701 * 179.97438 * 7 5 4 39 39 H 1.08998 * 109.47195 * 300.00678 * 7 5 4 40 40 H 1.09006 * 109.47326 * 270.17950 * 9 8 4 41 41 H 1.08996 * 109.47043 * 30.17944 * 9 8 4 42 42 H 1.09005 * 109.47194 * 150.17767 * 9 8 4 43 43 H 1.09003 * 109.46536 * 149.70916 * 11 10 8 44 44 H 1.09004 * 109.46906 * 29.71483 * 11 10 8 45 45 H 1.08997 * 109.49579 * 307.21290 * 13 12 11 46 46 H 1.08997 * 109.49514 * 67.29972 * 13 12 11 47 47 H 1.08997 * 109.47157 * 187.42912 * 16 14 13 48 48 H 1.09000 * 109.47503 * 307.43266 * 16 14 13 49 49 H 1.09003 * 109.47319 * 67.43102 * 16 14 13 50 50 H 0.96995 * 120.00053 * 175.07686 * 21 20 18 51 51 H 1.09004 * 109.47199 * 60.00106 * 28 26 17 52 52 H 1.09005 * 109.47212 * 180.02562 * 28 26 17 53 53 H 1.09001 * 109.47144 * 300.00442 * 28 26 17 54 54 H 1.09002 * 109.49105 * 52.78231 * 29 12 11 55 55 H 1.08998 * 109.49509 * 292.70591 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 4.7753 2.3838 -1.2481 7 6 4.7735 2.3843 1.2504 8 6 3.6142 -0.7153 0.0064 9 6 4.8350 -1.5989 0.0142 10 6 2.3271 -1.1330 0.0005 11 6 1.8599 -2.5658 0.0012 12 7 1.7088 -3.0322 -1.3836 13 6 2.8679 -2.6452 -2.1988 14 6 2.5969 -2.9891 -3.6626 15 1 1.7833 -2.3679 -4.0370 16 6 3.8603 -2.7411 -4.4893 17 7 2.2178 -4.4073 -3.7532 18 6 2.8424 -5.2468 -4.6365 19 1 3.2575 -6.1821 -4.2912 20 6 2.9420 -4.8957 -5.9758 21 7 2.1073 -4.0172 -6.4896 22 14 4.2605 -5.6698 -7.0488 23 1 4.1557 -5.1305 -8.4285 24 1 5.6006 -5.3511 -6.4938 25 1 4.0739 -7.1428 -7.0771 26 6 1.1543 -4.9013 -2.8654 27 1 0.1991 -4.4675 -3.1617 28 6 1.0794 -6.4269 -2.9526 29 6 1.4860 -4.4834 -1.4290 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5140 32 1 -0.3634 -0.8902 -0.5135 33 1 5.6908 0.8872 0.0021 34 1 5.6539 3.0288 -1.2473 35 1 4.7871 1.7544 -2.1380 36 1 3.8745 2.9973 -1.2489 37 1 4.7838 1.7552 2.1405 38 1 5.6525 3.0287 1.2513 39 1 3.8726 2.9978 1.2496 40 1 5.1346 -1.8138 -1.0116 41 1 5.6485 -1.0901 0.5312 42 1 4.6049 -2.5320 0.5285 43 1 0.9009 -2.6349 0.5147 44 1 2.5932 -3.1868 0.5158 45 1 3.0395 -1.5732 -2.1015 46 1 3.7498 -3.1876 -1.8580 47 1 3.6306 -2.8591 -5.5482 48 1 4.2213 -1.7290 -4.3064 49 1 4.6291 -3.4584 -4.2021 50 1 2.2209 -3.7182 -7.4053 51 1 2.0339 -6.8556 -2.6472 52 1 0.2902 -6.7902 -2.2942 53 1 0.8604 -6.7219 -3.9788 54 1 0.6555 -4.7446 -0.7732 55 1 2.3871 -5.0002 -1.0987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895968379.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:49 Heat of formation + Delta-G solvation = 81.278003 kcal Electronic energy + Delta-G solvation = -31626.335423 eV Core-core repulsion = 27892.791018 eV Total energy + Delta-G solvation = -3733.544404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.243 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.45955 -39.92827 -37.14002 -36.27811 -34.59272 -33.62604 -33.32908 -31.94646 -29.79038 -28.96753 -28.23472 -28.20910 -27.30235 -27.02711 -25.65100 -23.16192 -22.56870 -21.98901 -20.82916 -20.25396 -19.78798 -18.07957 -17.53320 -17.17410 -16.55914 -16.17314 -16.08724 -15.80956 -15.54293 -15.33757 -14.96403 -14.67641 -14.58590 -14.28063 -14.12043 -14.05612 -13.97643 -13.46420 -13.34919 -13.30558 -13.25766 -13.20480 -13.00316 -12.95740 -12.81982 -12.77467 -12.52840 -12.44866 -12.35447 -12.29534 -12.20528 -12.13115 -12.04307 -11.85618 -11.50719 -11.46493 -11.26506 -11.09645 -10.08352 -9.90146 -9.32339 -8.89393 -8.35420 -7.64171 -5.52193 0.94486 1.45371 1.48046 1.53471 1.61088 1.78404 2.52115 3.26916 3.29209 3.47159 3.64099 3.72525 3.94244 3.94701 4.07068 4.15780 4.21323 4.34374 4.35016 4.44610 4.56497 4.61284 4.63134 4.64013 4.64774 4.69475 4.72179 4.76438 4.77552 4.83168 4.85467 4.88040 4.90753 4.94197 4.97223 5.00108 5.02028 5.04285 5.12157 5.15787 5.19215 5.27041 5.33606 5.37486 5.52962 5.58809 5.71576 5.76909 5.82771 5.85271 6.23764 6.37671 6.44897 6.60127 6.87748 7.28667 7.87967 8.61946 9.18558 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.003811 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.095534 B = 7345.628706 C = 8397.456122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.076 3.924 3 N -0.325 5.325 4 N -0.367 5.367 5 C 0.146 3.854 6 C -0.156 4.156 7 C -0.150 4.150 8 C 0.089 3.911 9 C -0.093 4.093 10 C -0.247 4.247 11 C 0.142 3.858 12 N -0.541 5.541 13 C 0.076 3.924 14 C 0.199 3.801 15 H -0.015 1.015 16 C -0.130 4.130 17 N -0.593 5.593 18 C -0.260 4.260 19 H 0.048 0.952 20 C -0.003 4.003 21 N -0.908 5.908 22 Si 0.931 3.069 23 H -0.296 1.296 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.162 3.838 27 H 0.002 0.998 28 C -0.118 4.118 29 C 0.062 3.938 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.024 0.976 47 H 0.057 0.943 48 H 0.039 0.961 49 H 0.044 0.956 50 H 0.248 0.752 51 H 0.048 0.952 52 H 0.071 0.929 53 H 0.035 0.965 54 H 0.087 0.913 55 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 8.679 17.727 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.148 5.148 4 N -0.150 5.150 5 C 0.045 3.955 6 C -0.213 4.213 7 C -0.208 4.208 8 C -0.040 4.040 9 C -0.151 4.151 10 C -0.258 4.258 11 C 0.014 3.986 12 N -0.266 5.266 13 C -0.054 4.054 14 C 0.093 3.907 15 H 0.003 0.997 16 C -0.188 4.188 17 N -0.318 5.318 18 C -0.391 4.391 19 H 0.065 0.935 20 C -0.202 4.202 21 N -0.550 5.550 22 Si 0.758 3.242 23 H -0.222 1.222 24 H -0.199 1.199 25 H -0.199 1.199 26 C 0.057 3.943 27 H 0.020 0.980 28 C -0.176 4.176 29 C -0.067 4.067 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.057 0.943 51 H 0.067 0.933 52 H 0.090 0.910 53 H 0.054 0.946 54 H 0.106 0.894 55 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.436 10.297 17.350 20.895 hybrid contribution 0.981 -1.327 -1.042 1.951 sum 6.416 8.971 16.308 19.687 Atomic orbital electron populations 1.20177 0.85776 1.03265 1.03383 1.22515 0.97774 0.90214 0.98468 1.77141 0.87247 1.23196 1.27226 1.48841 1.05324 1.03946 1.56851 1.21626 0.84022 0.92080 0.97737 1.22088 1.03723 0.99740 0.95789 1.22060 1.03706 0.99628 0.95412 1.21193 0.97397 0.85061 1.00325 1.20627 0.92699 0.98195 1.03601 1.19667 0.91598 0.96078 1.18482 1.20296 1.00320 0.89392 0.88572 1.61933 1.40416 1.13696 1.10512 1.22334 0.90727 0.98555 0.93748 1.20084 0.93341 0.85300 0.92003 0.99721 1.21805 0.97098 0.97847 1.02058 1.44297 1.39538 1.05514 1.42448 1.18785 1.30246 1.02994 0.87034 0.93473 1.25987 0.98150 0.98477 0.97573 1.70325 1.34680 1.35782 1.14194 0.85953 0.81228 0.78956 0.78031 1.22208 1.19854 1.19930 1.20710 0.90261 0.93776 0.89581 0.98005 1.21572 1.00853 0.94503 1.00649 1.22478 0.99821 0.86891 0.97486 0.89146 0.91501 0.90305 0.86179 0.87910 0.93689 0.92947 0.92463 0.88096 0.92928 0.90585 0.88827 0.89436 0.89509 0.94287 0.92141 0.95744 0.92415 0.94238 0.93653 0.94261 0.93292 0.91022 0.94583 0.89430 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 10.12 71.24 0.72 -0.95 16 2 C 0.08 2.28 7.22 43.10 0.31 2.60 16 3 N -0.33 -10.01 12.43 -47.39 -0.59 -10.60 16 4 N -0.37 -9.56 3.28 -314.28 -1.03 -10.59 16 5 C 0.15 2.67 3.64 44.99 0.16 2.84 16 6 C -0.16 -2.89 9.45 71.98 0.68 -2.21 16 7 C -0.15 -2.26 9.45 71.98 0.68 -1.58 16 8 C 0.09 2.35 5.56 41.41 0.23 2.58 16 9 C -0.09 -1.90 8.67 71.24 0.62 -1.28 16 10 C -0.25 -7.19 4.24 -20.14 -0.09 -7.27 16 11 C 0.14 4.01 5.22 85.56 0.45 4.45 16 12 N -0.54 -19.08 4.77 -900.77 -4.30 -23.38 16 13 C 0.08 2.93 3.39 86.23 0.29 3.22 16 14 C 0.20 9.57 3.16 44.81 0.14 9.71 16 15 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 16 C -0.13 -6.10 7.93 71.98 0.57 -5.53 16 17 N -0.59 -29.70 2.83 -651.48 -1.84 -31.54 16 18 C -0.26 -13.92 6.79 84.03 0.57 -13.35 16 19 H 0.05 2.54 7.14 -2.91 -0.02 2.52 16 20 C 0.00 -0.15 3.22 84.86 0.27 0.12 16 21 N -0.91 -53.52 11.87 21.65 0.26 -53.26 16 22 Si 0.93 43.47 29.61 68.60 2.03 45.51 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.16 7.05 3.66 44.96 0.16 7.21 16 27 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 28 C -0.12 -4.55 8.17 71.98 0.59 -3.96 16 29 C 0.06 2.17 4.87 86.38 0.42 2.60 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.05 7.92 -2.39 -0.02 2.03 16 33 H 0.12 1.65 6.68 -2.39 -0.02 1.63 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.73 7.05 -2.38 -0.02 1.71 16 41 H 0.09 1.35 7.11 -2.39 -0.02 1.33 16 42 H 0.09 1.71 7.14 -2.38 -0.02 1.70 16 43 H 0.09 2.22 7.92 -2.39 -0.02 2.20 16 44 H 0.04 1.02 7.07 -2.38 -0.02 1.01 16 45 H 0.06 2.36 5.52 -2.39 -0.01 2.35 16 46 H 0.02 0.93 7.05 -2.39 -0.02 0.92 16 47 H 0.06 3.05 4.98 -2.39 -0.01 3.04 16 48 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.04 2.10 7.68 -2.39 -0.02 2.08 16 50 H 0.25 14.26 8.32 -92.71 -0.77 13.49 16 51 H 0.05 1.85 7.60 -2.39 -0.02 1.84 16 52 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 53 H 0.03 1.57 7.65 -2.39 -0.02 1.55 16 54 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 55 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.13 411.60 2.15 -65.98 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.84 Total: 18.70 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.79 Total: -0.81 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -7.51 Total: -129.37 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.13 2.15 -65.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895968379.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.261 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds