Wall clock time and date at job start Tue Mar 31 2020 19:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48493 * 109.47487 * 270.00298 * 3 2 1 5 5 H 1.48496 * 109.46900 * 30.00788 * 3 2 1 6 6 H 1.48502 * 109.46945 * 150.00216 * 3 2 1 7 7 C 1.37872 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00085 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99887 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47004 * 179.97438 * 9 7 2 11 11 N 1.46491 * 109.46926 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99874 * 180.02562 * 11 10 9 13 13 O 1.21609 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.47412 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.38056 * 126.41648 * 0.02562 * 14 12 11 16 16 N 1.34247 * 107.42796 * 180.24736 * 15 14 12 17 17 H 0.96995 * 125.74765 * 179.75133 * 16 15 14 18 18 N 1.39939 * 108.50611 * 359.63872 * 16 15 14 19 19 C 1.30486 * 108.89158 * 0.36763 * 18 16 15 20 20 I 2.09510 * 125.99507 * 179.81588 * 19 18 16 21 21 H 0.96995 * 120.00080 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46673 * 60.00388 * 9 7 2 23 23 H 1.08996 * 109.47208 * 299.99712 * 9 7 2 24 24 H 1.09004 * 109.46644 * 60.00361 * 10 9 7 25 25 H 1.09000 * 109.47121 * 300.00582 * 10 9 7 26 26 H 0.97000 * 120.00165 * 359.97438 * 11 10 9 27 27 H 1.08002 * 126.28310 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6364 -0.0009 12 6 6.1605 -3.8036 -0.0014 13 8 5.5525 -4.8568 -0.0022 14 6 7.6346 -3.8036 -0.0007 15 6 8.4542 -2.6926 0.0008 16 7 9.7236 -3.1294 -0.0047 17 1 10.5155 -2.5694 -0.0085 18 7 9.7118 -4.5287 -0.0013 19 6 8.4737 -4.9408 -0.0020 20 53 7.8408 -6.9380 -0.0034 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8746 -0.6800 -0.8911 24 1 3.6580 -3.1504 -0.8908 25 1 3.6586 -3.1501 0.8892 26 1 5.9715 -1.7963 -0.0014 27 1 8.1330 -1.6614 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897367355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:53 Heat of formation + Delta-G solvation = 47.375390 kcal Electronic energy + Delta-G solvation = -14410.478299 eV Core-core repulsion = 11643.268629 eV Total energy + Delta-G solvation = -2767.209670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.987 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70141 -38.82121 -35.00780 -33.03834 -32.77454 -31.16154 -29.65857 -29.01819 -25.12732 -23.03760 -21.23889 -20.70965 -19.94151 -18.55978 -16.90344 -16.34772 -15.51115 -15.07343 -14.58927 -14.40235 -14.13548 -13.49718 -13.12100 -12.74446 -12.59259 -11.52605 -11.46318 -11.23014 -11.02717 -10.44401 -10.40550 -10.08656 -9.96272 -9.64370 -9.40341 -9.21995 -9.15371 -8.64601 -8.48217 -6.11877 -4.11893 0.65421 1.21153 1.71991 2.53947 3.22906 3.29774 3.31611 3.57194 3.62470 4.30986 4.35901 4.58557 4.98023 5.20881 5.25636 5.67284 6.13152 6.22397 6.56253 6.64530 6.75476 6.95882 7.13913 7.22405 7.65772 7.91061 8.43163 8.59102 8.93224 9.48094 11.01241 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.003423 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.750224 B = 8177.141155 C = 9103.444527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.077 0.923 9 C -0.022 4.022 10 C 0.133 3.867 11 N -0.723 5.723 12 C 0.576 3.424 13 O -0.524 6.524 14 C -0.255 4.255 15 C 0.107 3.893 16 N -0.454 5.454 17 H 0.446 0.554 18 N -0.263 5.263 19 C 0.104 3.896 20 I 0.083 6.917 21 H 0.265 0.735 22 H 0.021 0.979 23 H 0.017 0.983 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.391 0.609 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.679 -9.466 0.006 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.011 3.989 11 N -0.373 5.373 12 C 0.361 3.639 13 O -0.401 6.401 14 C -0.272 4.272 15 C -0.046 4.046 16 N -0.161 5.161 17 H 0.292 0.708 18 N -0.087 5.087 19 C -0.201 4.201 20 I 0.222 6.778 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.224 0.776 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 23.848 -11.774 0.008 26.596 hybrid contribution 0.591 3.350 -0.017 3.401 sum 24.439 -8.424 -0.009 25.850 Atomic orbital electron populations 1.69901 1.06282 1.27025 1.50426 1.25006 0.94758 0.99113 0.94444 0.86755 0.80239 0.83648 0.78430 1.20271 1.21307 1.19144 1.20925 0.88659 0.94915 1.51548 0.90539 1.19796 0.98029 0.91433 0.96707 1.21511 0.75550 1.00033 1.01851 1.46141 1.09158 1.07203 1.74777 1.17173 0.84795 0.84661 0.77279 1.90839 1.68901 1.30497 1.49854 1.20436 0.95544 0.91187 1.20072 1.23255 0.84430 1.00122 0.96826 1.46249 1.07608 1.05719 1.56520 0.70812 1.77254 1.19314 0.88784 1.23305 1.27221 0.91791 0.99380 1.01709 1.96763 1.89439 0.93009 1.98549 0.92558 0.96079 0.96509 0.91758 0.91740 0.77641 0.78898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.26 15 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 15 3 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 15 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.27 -5.80 6.54 56.52 0.37 -5.43 15 7 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 15 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 15 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 15 10 C 0.13 2.60 5.61 -4.04 -0.02 2.58 15 11 N -0.72 -11.30 5.54 -61.39 -0.34 -11.64 15 12 C 0.58 9.36 7.81 -12.53 -0.10 9.26 15 13 O -0.52 -10.11 15.06 5.27 0.08 -10.03 15 14 C -0.26 -3.37 6.13 -105.05 -0.64 -4.01 15 15 C 0.11 0.93 11.52 -16.56 -0.19 0.74 15 16 N -0.45 -3.65 7.28 30.85 0.22 -3.43 15 17 H 0.45 1.75 8.96 -182.72 -1.64 0.11 15 18 N -0.26 -3.15 12.63 30.21 0.38 -2.76 15 19 C 0.10 1.41 7.72 -16.95 -0.13 1.28 15 20 I 0.08 1.09 38.78 -73.02 -2.83 -1.74 15 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.02 0.45 7.20 -51.93 -0.37 0.08 15 23 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 15 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.06 1.35 8.14 -51.93 -0.42 0.92 15 26 H 0.39 4.79 7.39 -40.82 -0.30 4.49 15 27 H 0.19 0.88 7.46 -52.49 -0.39 0.49 15 LS Contribution 270.73 15.07 4.08 4.08 Total: -1.00 -33.76 270.73 -7.46 -41.23 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.53 Total: -1.74 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.63 Total: -3.59 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 1.04 Total: -44.09 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 53 Polarization: 1.09 SS G_CDS: -2.83 Total: -1.74 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.76 -7.46 -41.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897367355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.602 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds